HEADER BIOSYNTHETIC PROTEIN 20-JUN-22 8A7B TITLE PCIDS1_D319N IN COMPLEX WITH MG2+ AND 3-BR-GPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEDON COCHLEARIAE; SOURCE 3 ORGANISM_COMMON: MUSTARD BEETLE; SOURCE 4 ORGANISM_TAXID: 80249; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INSECTS, BIOSYNTHESIS, TERPENES, METAL REGULATION, CATALYSIS, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.ECKER,W.BOLAND,M.GROLL REVDAT 4 07-FEB-24 8A7B 1 REMARK REVDAT 3 16-AUG-23 8A7B 1 JRNL REVDAT 2 21-JUN-23 8A7B 1 JRNL REVDAT 1 31-MAY-23 8A7B 0 JRNL AUTH F.ECKER,A.VATTEKKATTE,W.BOLAND,M.GROLL JRNL TITL METAL-DEPENDENT ENZYME SYMMETRY GUIDES THE BIOSYNTHETIC FLUX JRNL TITL 2 OF TERPENE PRECURSORS. JRNL REF NAT.CHEM. V. 15 1188 2023 JRNL REFN ESSN 1755-4349 JRNL PMID 37308711 JRNL DOI 10.1038/S41557-023-01235-9 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 89533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 346 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.181 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5547 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5309 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7487 ; 1.199 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12268 ; 1.270 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 665 ; 5.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;34.322 ;22.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1015 ;13.556 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;14.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 717 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6115 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1267 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10856 ; 0.570 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 427 REMARK 3 ORIGIN FOR THE GROUP (A): 70.8924 9.5815 32.7716 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.0752 REMARK 3 T33: 0.0175 T12: 0.0319 REMARK 3 T13: 0.0198 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9007 L22: 1.3399 REMARK 3 L33: 0.8313 L12: 0.6698 REMARK 3 L13: 0.3543 L23: 0.4162 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.1469 S13: 0.0630 REMARK 3 S21: 0.1253 S22: 0.0226 S23: 0.0495 REMARK 3 S31: -0.0886 S32: 0.0165 S33: 0.0058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 426 REMARK 3 ORIGIN FOR THE GROUP (A): 75.5624 -10.7163 5.9769 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0666 REMARK 3 T33: 0.0096 T12: -0.0131 REMARK 3 T13: 0.0078 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.9309 L22: 1.3521 REMARK 3 L33: 0.3186 L12: -0.7703 REMARK 3 L13: -0.0583 L23: -0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 0.0536 S13: 0.0025 REMARK 3 S21: -0.0402 S22: 0.0424 S23: -0.0470 REMARK 3 S31: 0.0015 S32: 0.0839 S33: -0.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8A7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8A6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.2 M MGCL2, 25% PEG 4000, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.98500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 PHE A 86 REMARK 465 ALA A 108 REMARK 465 GLY A 109 REMARK 465 ARG A 110 REMARK 465 GLN A 329 REMARK 465 VAL A 330 REMARK 465 ASP A 428 REMARK 465 ALA A 429 REMARK 465 GLY B 84 REMARK 465 SER B 85 REMARK 465 SER B 185 REMARK 465 GLU B 186 REMARK 465 THR B 187 REMARK 465 ARG B 188 REMARK 465 ARG B 189 REMARK 465 GLY B 190 REMARK 465 GLN B 191 REMARK 465 PRO B 192 REMARK 465 CYS B 193 REMARK 465 TRP B 194 REMARK 465 TYR B 195 REMARK 465 ARG B 196 REMARK 465 GLN B 197 REMARK 465 GLU B 198 REMARK 465 ASN B 199 REMARK 465 VAL B 200 REMARK 465 GLY B 201 REMARK 465 GLN B 329 REMARK 465 VAL B 330 REMARK 465 THR B 331 REMARK 465 GLY B 332 REMARK 465 LYS B 333 REMARK 465 ARG B 427 REMARK 465 ASP B 428 REMARK 465 ALA B 429 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 134 56.41 -107.16 REMARK 500 VAL A 200 -80.23 -104.94 REMARK 500 SER A 409 -159.89 -143.52 REMARK 500 THR B 277 -54.62 -130.97 REMARK 500 SER B 409 -149.35 -126.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 764 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD1 REMARK 620 2 ASP A 183 OD2 89.0 REMARK 620 3 L7X A 508 O2A 91.1 78.6 REMARK 620 4 HOH A 620 O 89.5 94.7 173.2 REMARK 620 5 HOH A 629 O 92.1 174.5 96.0 90.8 REMARK 620 6 HOH A 711 O 175.2 87.5 91.4 87.6 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 OD2 REMARK 620 2 ASP A 183 OD2 91.2 REMARK 620 3 L7X A 508 O3B 90.6 167.9 REMARK 620 4 L7X A 508 O2A 89.8 79.0 89.0 REMARK 620 5 HOH A 631 O 86.4 100.3 91.7 176.1 REMARK 620 6 HOH A 705 O 175.5 87.9 91.3 94.3 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 319 OD1 REMARK 620 2 HOH A 605 O 83.7 REMARK 620 3 HOH A 615 O 90.0 96.6 REMARK 620 4 HOH A 651 O 171.8 88.9 87.5 REMARK 620 5 HOH A 695 O 88.0 88.8 174.0 95.2 REMARK 620 6 HOH A 706 O 90.2 173.1 86.5 97.4 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 L7X A 508 O2B REMARK 620 2 HOH A 621 O 94.4 REMARK 620 3 HOH A 668 O 88.5 92.0 REMARK 620 4 HOH A 692 O 91.9 89.5 178.4 REMARK 620 5 HOH A 702 O 91.4 174.1 89.1 89.4 REMARK 620 6 HOH A 723 O 176.6 87.6 88.6 90.9 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 319 OD1 REMARK 620 2 HOH B 605 O 87.5 REMARK 620 3 HOH B 646 O 91.1 97.0 REMARK 620 4 HOH B 680 O 175.8 88.5 87.8 REMARK 620 5 HOH B 685 O 88.7 89.6 173.4 92.8 REMARK 620 6 HOH B 714 O 93.4 174.3 88.6 90.7 84.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8A6U RELATED DB: PDB REMARK 900 PCIDS1 IN COMPLEX WITH MG2+ DBREF 8A7B A 86 429 UNP M1JS91 M1JS91_PHACE 86 429 DBREF 8A7B B 86 429 UNP M1JS91 M1JS91_PHACE 86 429 SEQADV 8A7B GLY A 84 UNP M1JS91 EXPRESSION TAG SEQADV 8A7B SER A 85 UNP M1JS91 EXPRESSION TAG SEQADV 8A7B ASN A 319 UNP M1JS91 ASP 319 ENGINEERED MUTATION SEQADV 8A7B GLY B 84 UNP M1JS91 EXPRESSION TAG SEQADV 8A7B SER B 85 UNP M1JS91 EXPRESSION TAG SEQADV 8A7B ASN B 319 UNP M1JS91 ASP 319 ENGINEERED MUTATION SEQRES 1 A 346 GLY SER PHE SER LYS GLU GLU SER ARG GLU PHE MET ALA SEQRES 2 A 346 ILE PHE PRO ASP ILE VAL ARG ASP LEU THR ASP ALA GLY SEQRES 3 A 346 ARG HIS THR ASP ILE PRO GLU VAL THR LYS ARG PHE ALA SEQRES 4 A 346 LYS VAL LEU GLN TYR ASN VAL PRO THR GLY LYS LYS THR SEQRES 5 A 346 ARG GLY LEU SER THR VAL ILE ALA TYR LYS MET LEU GLU SEQRES 6 A 346 LYS PRO GLU ASN LEU THR PRO GLU ASN VAL ARG LEU ALA SEQRES 7 A 346 GLY ILE LEU GLY TRP CYS VAL GLU LEU LEU GLN ALA SER SEQRES 8 A 346 LEU LEU ILE MET ASP ASP LEU MET ASP ARG SER GLU THR SEQRES 9 A 346 ARG ARG GLY GLN PRO CYS TRP TYR ARG GLN GLU ASN VAL SEQRES 10 A 346 GLY PHE LEU ALA ILE ASN ASP CYS LEU HIS VAL GLU SER SEQRES 11 A 346 SER LEU TYR SER VAL LEU ARG LYS TYR PHE SER HIS LEU SEQRES 12 A 346 PRO CYS TYR VAL PRO ILE ILE GLU LEU PHE HIS ASP VAL SEQRES 13 A 346 ASN PHE LYS THR ASN MET GLY GLN SER LEU ASP ALA LEU SEQRES 14 A 346 CYS MET LYS ASP GLY ARG PRO ILE LEU SER GLN PHE THR SEQRES 15 A 346 MET LYS ARG TYR SER SER ILE VAL LYS TYR LYS THR SER SEQRES 16 A 346 TYR TYR THR PHE GLN LEU PRO VAL SER LEU GLY MET TYR SEQRES 17 A 346 LEU ALA ASP MET TYR ASP PRO GLU GLN HIS ARG GLN ALA SEQRES 18 A 346 LYS THR ILE LEU MET GLU ILE GLY GLU PHE PHE GLN ILE SEQRES 19 A 346 GLN ASN ASP PHE LEU ASP ALA PHE GLY ASP SER GLN VAL SEQRES 20 A 346 THR GLY LYS VAL GLY THR ASP ILE LYS GLU GLY LYS CYS SEQRES 21 A 346 SER TRP LEU ALA VAL VAL ALA LEU GLN ARG SER ASN PRO SEQRES 22 A 346 ALA GLN ARG GLN ILE MET GLU GLU HIS TYR GLY ARG PRO SEQRES 23 A 346 GLU PRO GLU SER THR GLN ILE ILE LYS ASN LEU TYR ILE SEQRES 24 A 346 GLU LEU GLY LEU PRO ALA THR PHE ALA VAL TYR GLU GLU SEQRES 25 A 346 GLU SER PHE ASN ILE ILE ARG THR HIS ILE HIS GLN ILE SEQRES 26 A 346 SER LYS GLY LEU PRO HIS ASP LEU PHE PHE LYS ILE MET SEQRES 27 A 346 LYS LYS ILE TYR LYS ARG ASP ALA SEQRES 1 B 346 GLY SER PHE SER LYS GLU GLU SER ARG GLU PHE MET ALA SEQRES 2 B 346 ILE PHE PRO ASP ILE VAL ARG ASP LEU THR ASP ALA GLY SEQRES 3 B 346 ARG HIS THR ASP ILE PRO GLU VAL THR LYS ARG PHE ALA SEQRES 4 B 346 LYS VAL LEU GLN TYR ASN VAL PRO THR GLY LYS LYS THR SEQRES 5 B 346 ARG GLY LEU SER THR VAL ILE ALA TYR LYS MET LEU GLU SEQRES 6 B 346 LYS PRO GLU ASN LEU THR PRO GLU ASN VAL ARG LEU ALA SEQRES 7 B 346 GLY ILE LEU GLY TRP CYS VAL GLU LEU LEU GLN ALA SER SEQRES 8 B 346 LEU LEU ILE MET ASP ASP LEU MET ASP ARG SER GLU THR SEQRES 9 B 346 ARG ARG GLY GLN PRO CYS TRP TYR ARG GLN GLU ASN VAL SEQRES 10 B 346 GLY PHE LEU ALA ILE ASN ASP CYS LEU HIS VAL GLU SER SEQRES 11 B 346 SER LEU TYR SER VAL LEU ARG LYS TYR PHE SER HIS LEU SEQRES 12 B 346 PRO CYS TYR VAL PRO ILE ILE GLU LEU PHE HIS ASP VAL SEQRES 13 B 346 ASN PHE LYS THR ASN MET GLY GLN SER LEU ASP ALA LEU SEQRES 14 B 346 CYS MET LYS ASP GLY ARG PRO ILE LEU SER GLN PHE THR SEQRES 15 B 346 MET LYS ARG TYR SER SER ILE VAL LYS TYR LYS THR SER SEQRES 16 B 346 TYR TYR THR PHE GLN LEU PRO VAL SER LEU GLY MET TYR SEQRES 17 B 346 LEU ALA ASP MET TYR ASP PRO GLU GLN HIS ARG GLN ALA SEQRES 18 B 346 LYS THR ILE LEU MET GLU ILE GLY GLU PHE PHE GLN ILE SEQRES 19 B 346 GLN ASN ASP PHE LEU ASP ALA PHE GLY ASP SER GLN VAL SEQRES 20 B 346 THR GLY LYS VAL GLY THR ASP ILE LYS GLU GLY LYS CYS SEQRES 21 B 346 SER TRP LEU ALA VAL VAL ALA LEU GLN ARG SER ASN PRO SEQRES 22 B 346 ALA GLN ARG GLN ILE MET GLU GLU HIS TYR GLY ARG PRO SEQRES 23 B 346 GLU PRO GLU SER THR GLN ILE ILE LYS ASN LEU TYR ILE SEQRES 24 B 346 GLU LEU GLY LEU PRO ALA THR PHE ALA VAL TYR GLU GLU SEQRES 25 B 346 GLU SER PHE ASN ILE ILE ARG THR HIS ILE HIS GLN ILE SEQRES 26 B 346 SER LYS GLY LEU PRO HIS ASP LEU PHE PHE LYS ILE MET SEQRES 27 B 346 LYS LYS ILE TYR LYS ARG ASP ALA HET MG A 501 1 HET MG A 502 1 HET MG A 503 1 HET MG A 504 1 HET GOL A 505 6 HET GOL A 506 6 HET CO3 A 507 4 HET L7X A 508 19 HET GOL B 501 6 HET MG B 502 1 HET GOL B 503 6 HET GOL B 504 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM CO3 CARBONATE ION HETNAM L7X [(2Z)-3-BROMANYL-7-METHYL-OCTA-2,6-DIENYL] PHOSPHONO HETNAM 2 L7X HYDROGEN PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 5(MG 2+) FORMUL 7 GOL 5(C3 H8 O3) FORMUL 9 CO3 C O3 2- FORMUL 10 L7X C9 H17 BR O7 P2 FORMUL 15 HOH *312(H2 O) HELIX 1 AA1 SER A 87 ALA A 96 1 10 HELIX 2 AA2 ILE A 97 ASP A 107 1 11 HELIX 3 AA3 ILE A 114 VAL A 129 1 16 HELIX 4 AA4 LYS A 134 GLU A 148 1 15 HELIX 5 AA5 LYS A 149 LEU A 153 5 5 HELIX 6 AA6 THR A 154 ARG A 184 1 31 HELIX 7 AA7 TRP A 194 GLN A 197 5 4 HELIX 8 AA8 VAL A 200 PHE A 202 5 3 HELIX 9 AA9 LEU A 203 SER A 224 1 22 HELIX 10 AB1 CYS A 228 LEU A 252 1 25 HELIX 11 AB2 LEU A 261 PHE A 264 5 4 HELIX 12 AB3 THR A 265 THR A 277 1 13 HELIX 13 AB4 THR A 277 PHE A 282 1 6 HELIX 14 AB5 PHE A 282 ALA A 293 1 12 HELIX 15 AB6 ASP A 297 GLY A 326 1 30 HELIX 16 AB7 THR A 336 GLY A 341 1 6 HELIX 17 AB8 SER A 344 SER A 354 1 11 HELIX 18 AB9 ASN A 355 TYR A 366 1 12 HELIX 19 AC1 GLU A 370 LEU A 384 1 15 HELIX 20 AC2 GLY A 385 GLN A 407 1 23 HELIX 21 AC3 PRO A 413 LYS A 426 1 14 HELIX 22 AC4 SER B 87 ALA B 96 1 10 HELIX 23 AC5 ILE B 97 THR B 106 1 10 HELIX 24 AC6 ILE B 114 VAL B 129 1 16 HELIX 25 AC7 LYS B 134 GLU B 148 1 15 HELIX 26 AC8 LYS B 149 LEU B 153 5 5 HELIX 27 AC9 THR B 154 ARG B 184 1 31 HELIX 28 AD1 ASN B 206 SER B 224 1 19 HELIX 29 AD2 CYS B 228 LEU B 252 1 25 HELIX 30 AD3 LEU B 261 PHE B 264 5 4 HELIX 31 AD4 THR B 265 THR B 277 1 13 HELIX 32 AD5 THR B 277 PHE B 282 1 6 HELIX 33 AD6 PHE B 282 ALA B 293 1 12 HELIX 34 AD7 ASP B 297 GLY B 326 1 30 HELIX 35 AD8 THR B 336 GLY B 341 1 6 HELIX 36 AD9 SER B 344 SER B 354 1 11 HELIX 37 AE1 ASN B 355 TYR B 366 1 12 HELIX 38 AE2 GLU B 370 LEU B 384 1 15 HELIX 39 AE3 GLY B 385 GLN B 407 1 23 HELIX 40 AE4 PRO B 413 LYS B 426 1 14 SHEET 1 AA1 2 THR A 187 ARG A 188 0 SHEET 2 AA1 2 GLN A 191 PRO A 192 -1 O GLN A 191 N ARG A 188 SHEET 1 AA2 2 MET A 254 LYS A 255 0 SHEET 2 AA2 2 ARG A 258 PRO A 259 -1 O ARG A 258 N LYS A 255 SHEET 1 AA3 2 MET B 254 LYS B 255 0 SHEET 2 AA3 2 ARG B 258 PRO B 259 -1 O ARG B 258 N LYS B 255 LINK OD1 ASP A 179 MG MG A 501 1555 1555 2.06 LINK OD2 ASP A 179 MG MG A 504 1555 1555 2.01 LINK OD2 ASP A 183 MG MG A 501 1555 1555 2.17 LINK OD2 ASP A 183 MG MG A 504 1555 1555 2.11 LINK OD1 ASN A 319 MG MG A 502 1555 1555 2.09 LINK MG MG A 501 O2A L7X A 508 1555 1555 2.08 LINK MG MG A 501 O HOH A 620 1555 1555 1.98 LINK MG MG A 501 O HOH A 629 1555 1555 2.11 LINK MG MG A 501 O HOH A 711 1555 1555 2.14 LINK MG MG A 502 O HOH A 605 1555 1555 2.10 LINK MG MG A 502 O HOH A 615 1555 1555 2.13 LINK MG MG A 502 O HOH A 651 1555 1555 2.05 LINK MG MG A 502 O HOH A 695 1555 1555 2.07 LINK MG MG A 502 O HOH A 706 1555 1555 2.07 LINK MG MG A 503 O2B L7X A 508 1555 1555 1.93 LINK MG MG A 503 O HOH A 621 1555 1555 2.05 LINK MG MG A 503 O HOH A 668 1555 1555 2.04 LINK MG MG A 503 O HOH A 692 1555 1555 2.15 LINK MG MG A 503 O HOH A 702 1555 1555 2.15 LINK MG MG A 503 O HOH A 723 1555 1555 2.07 LINK MG MG A 504 O3B L7X A 508 1555 1555 2.06 LINK MG MG A 504 O2A L7X A 508 1555 1555 2.12 LINK MG MG A 504 O HOH A 631 1555 1555 2.10 LINK MG MG A 504 O HOH A 705 1555 1555 2.13 LINK OD1 ASN B 319 MG MG B 502 1555 1555 1.98 LINK MG MG B 502 O HOH B 605 1555 1555 2.08 LINK MG MG B 502 O HOH B 646 1555 1555 1.98 LINK MG MG B 502 O HOH B 680 1555 1555 2.12 LINK MG MG B 502 O HOH B 685 1555 1555 2.07 LINK MG MG B 502 O HOH B 714 1555 1555 2.14 CRYST1 59.310 77.970 88.710 90.00 101.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016861 0.000000 0.003357 0.00000 SCALE2 0.000000 0.012825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011494 0.00000