data_8A7Z # _entry.id 8A7Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8A7Z pdb_00008a7z 10.2210/pdb8a7z/pdb WWPDB D_1292123836 ? ? BMRB 34739 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR structure of holo-acp' _pdbx_database_related.db_id 34739 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 8A7Z _pdbx_database_status.recvd_initial_deposition_date 2022-06-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Collin, S.' 1 ? 'Weissman, K.J.' 2 ? 'Chagot, B.' 3 ? 'Gruez, A.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 1327 _citation.page_last 1327 _citation.title 'Decrypting the programming of beta-methylation in virginiamycin M biosynthesis.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-36974-3 _citation.pdbx_database_id_PubMed 36899003 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Collin, S.' 1 0000-0002-8565-8244 primary 'Cox, R.J.' 2 0000-0002-1844-0157 primary 'Paris, C.' 3 0000-0001-8673-3130 primary 'Jacob, C.' 4 0000-0001-8522-2865 primary 'Chagot, B.' 5 0000-0002-9153-0060 primary 'Weissman, K.J.' 6 0000-0002-3012-2960 primary 'Gruez, A.' 7 0000-0002-5828-5526 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hybrid polyketide synthase-non ribosomal peptide synthetase' 8882.927 1 ? ? ? ? 2 non-polymer syn "4'-PHOSPHOPANTETHEINE" 358.348 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSAGRQEEIAEEVARLLAGVLYLEPDRLDPEETFLTLGVDSILGVEFVAAVNAAYPVGVKATALYDHPTPAAFARHIA ESLGA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSAGRQEEIAEEVARLLAGVLYLEPDRLDPEETFLTLGVDSILGVEFVAAVNAAYPVGVKATALYDHPTPAAFARHIA ESLGA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 ALA n 1 6 GLY n 1 7 ARG n 1 8 GLN n 1 9 GLU n 1 10 GLU n 1 11 ILE n 1 12 ALA n 1 13 GLU n 1 14 GLU n 1 15 VAL n 1 16 ALA n 1 17 ARG n 1 18 LEU n 1 19 LEU n 1 20 ALA n 1 21 GLY n 1 22 VAL n 1 23 LEU n 1 24 TYR n 1 25 LEU n 1 26 GLU n 1 27 PRO n 1 28 ASP n 1 29 ARG n 1 30 LEU n 1 31 ASP n 1 32 PRO n 1 33 GLU n 1 34 GLU n 1 35 THR n 1 36 PHE n 1 37 LEU n 1 38 THR n 1 39 LEU n 1 40 GLY n 1 41 VAL n 1 42 ASP n 1 43 SER n 1 44 ILE n 1 45 LEU n 1 46 GLY n 1 47 VAL n 1 48 GLU n 1 49 PHE n 1 50 VAL n 1 51 ALA n 1 52 ALA n 1 53 VAL n 1 54 ASN n 1 55 ALA n 1 56 ALA n 1 57 TYR n 1 58 PRO n 1 59 VAL n 1 60 GLY n 1 61 VAL n 1 62 LYS n 1 63 ALA n 1 64 THR n 1 65 ALA n 1 66 LEU n 1 67 TYR n 1 68 ASP n 1 69 HIS n 1 70 PRO n 1 71 THR n 1 72 PRO n 1 73 ALA n 1 74 ALA n 1 75 PHE n 1 76 ALA n 1 77 ARG n 1 78 HIS n 1 79 ILE n 1 80 ALA n 1 81 GLU n 1 82 SER n 1 83 LEU n 1 84 GLY n 1 85 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 85 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene virA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces virginiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1961 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBG102 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4PHN0_STRVG _struct_ref.pdbx_db_accession A4PHN0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AGRQEEIAEEVARLLAGVLYLEPDRLDPEETFLTLGVDSILGVEFVAAVNAAYPVGVKATALYDHPTPAAFARHIAESLG A ; _struct_ref.pdbx_align_begin 6732 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8A7Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 85 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A4PHN0 _struct_ref_seq.db_align_beg 6732 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6812 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 6732 _struct_ref_seq.pdbx_auth_seq_align_end 6812 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8A7Z GLY A 1 ? UNP A4PHN0 ? ? 'expression tag' -4 1 1 8A7Z PRO A 2 ? UNP A4PHN0 ? ? 'expression tag' -3 2 1 8A7Z GLY A 3 ? UNP A4PHN0 ? ? 'expression tag' -2 3 1 8A7Z SER A 4 ? UNP A4PHN0 ? ? 'expression tag' -1 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PNS non-polymer . "4'-PHOSPHOPANTETHEINE" ? 'C11 H23 N2 O7 P S' 358.348 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '3D HNCO' 1 isotropic 3 1 1 '3D H(CCO)NH' 1 isotropic 4 1 1 '3D C(CO)NH' 1 isotropic 5 1 1 '3D HCCH-TOCSY' 1 isotropic 6 1 1 '3D CCH-TOCSY' 1 isotropic 7 1 1 '2D (HB)CB(CGCD)HD' 1 isotropic 8 1 1 '2D (HB)CB(CGCDCE)HE' 1 isotropic 9 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 12 1 1 '3D 1H-15N NOESY' 1 isotropic 11 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 10 1 1 '2D 1H-15N' 1 isotropic 13 1 1 '2D TOCSY H(C12-N14)' 1 isotropic 14 1 1 '2D NOESY H(C12-N14)' 1 isotropic 15 1 1 '2D NOESY H-H(C12-N14)' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details '100 mM NaP' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0 mM [U-13C; U-15N] acp5a-holo, 100 mM sodium phosphate, 0.5 mM TCEP, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label sample1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 8A7Z _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 8A7Z _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8A7Z _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' NMRFAM-SPARKY 1.470 ;Bioinformatics. 2015 Apr 15; 31(8):1325-7. Epub 2014 Dec 12 NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. Lee W, Tonelli M, Markley JL ; 2 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee et al. 2015' 4 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 5 collection TopSpin ? 'Bruker Biospin' 6 'peak picking' NMRFAM-SPARKY 1.470 ;Bioinformatics. 2015 Apr 15; 31(8):1325-7. Epub 2014 Dec 12 NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. Lee W, Tonelli M, Markley JL ; # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8A7Z _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8A7Z _struct.title 'NMR structure of holo-acp' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8A7Z _struct_keywords.text 'Acyl carrier protein, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 6 ? LEU A 23 ? GLY A 6733 LEU A 6750 1 ? 18 HELX_P HELX_P2 AA2 ASP A 42 ? TYR A 57 ? ASP A 6769 TYR A 6784 1 ? 16 HELX_P HELX_P3 AA3 THR A 64 ? HIS A 69 ? THR A 6791 HIS A 6796 1 ? 6 HELX_P HELX_P4 AA4 THR A 71 ? LEU A 83 ? THR A 6798 LEU A 6810 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 43 _struct_conn.ptnr1_label_atom_id OG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id PNS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id P24 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 6770 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNS _struct_conn.ptnr2_auth_seq_id 6901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.605 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 1 A . ? GLY -4 A PRO 2 A ? PRO -3 A 6 -3.08 2 GLY 6 A . ? GLY 6733 A ARG 7 A ? ARG 6734 A 10 -8.79 3 GLY 1 A . ? GLY -4 A PRO 2 A ? PRO -3 A 11 -0.71 4 GLY 1 A . ? GLY -4 A PRO 2 A ? PRO -3 A 19 -0.60 # _atom_sites.entry_id 8A7Z _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 -4 GLY GLY A . n A 1 2 PRO 2 -3 -3 PRO PRO A . n A 1 3 GLY 3 -2 -2 GLY GLY A . n A 1 4 SER 4 -1 -1 SER SER A . n A 1 5 ALA 5 6732 6732 ALA ALA A . n A 1 6 GLY 6 6733 6733 GLY GLY A . n A 1 7 ARG 7 6734 6734 ARG ARG A . n A 1 8 GLN 8 6735 6735 GLN GLN A . n A 1 9 GLU 9 6736 6736 GLU GLU A . n A 1 10 GLU 10 6737 6737 GLU GLU A . n A 1 11 ILE 11 6738 6738 ILE ILE A . n A 1 12 ALA 12 6739 6739 ALA ALA A . n A 1 13 GLU 13 6740 6740 GLU GLU A . n A 1 14 GLU 14 6741 6741 GLU GLU A . n A 1 15 VAL 15 6742 6742 VAL VAL A . n A 1 16 ALA 16 6743 6743 ALA ALA A . n A 1 17 ARG 17 6744 6744 ARG ARG A . n A 1 18 LEU 18 6745 6745 LEU LEU A . n A 1 19 LEU 19 6746 6746 LEU LEU A . n A 1 20 ALA 20 6747 6747 ALA ALA A . n A 1 21 GLY 21 6748 6748 GLY GLY A . n A 1 22 VAL 22 6749 6749 VAL VAL A . n A 1 23 LEU 23 6750 6750 LEU LEU A . n A 1 24 TYR 24 6751 6751 TYR TYR A . n A 1 25 LEU 25 6752 6752 LEU LEU A . n A 1 26 GLU 26 6753 6753 GLU GLU A . n A 1 27 PRO 27 6754 6754 PRO PRO A . n A 1 28 ASP 28 6755 6755 ASP ASP A . n A 1 29 ARG 29 6756 6756 ARG ARG A . n A 1 30 LEU 30 6757 6757 LEU LEU A . n A 1 31 ASP 31 6758 6758 ASP ASP A . n A 1 32 PRO 32 6759 6759 PRO PRO A . n A 1 33 GLU 33 6760 6760 GLU GLU A . n A 1 34 GLU 34 6761 6761 GLU GLU A . n A 1 35 THR 35 6762 6762 THR THR A . n A 1 36 PHE 36 6763 6763 PHE PHE A . n A 1 37 LEU 37 6764 6764 LEU LEU A . n A 1 38 THR 38 6765 6765 THR THR A . n A 1 39 LEU 39 6766 6766 LEU LEU A . n A 1 40 GLY 40 6767 6767 GLY GLY A . n A 1 41 VAL 41 6768 6768 VAL VAL A . n A 1 42 ASP 42 6769 6769 ASP ASP A . n A 1 43 SER 43 6770 6770 SER SER A . n A 1 44 ILE 44 6771 6771 ILE ILE A . n A 1 45 LEU 45 6772 6772 LEU LEU A . n A 1 46 GLY 46 6773 6773 GLY GLY A . n A 1 47 VAL 47 6774 6774 VAL VAL A . n A 1 48 GLU 48 6775 6775 GLU GLU A . n A 1 49 PHE 49 6776 6776 PHE PHE A . n A 1 50 VAL 50 6777 6777 VAL VAL A . n A 1 51 ALA 51 6778 6778 ALA ALA A . n A 1 52 ALA 52 6779 6779 ALA ALA A . n A 1 53 VAL 53 6780 6780 VAL VAL A . n A 1 54 ASN 54 6781 6781 ASN ASN A . n A 1 55 ALA 55 6782 6782 ALA ALA A . n A 1 56 ALA 56 6783 6783 ALA ALA A . n A 1 57 TYR 57 6784 6784 TYR TYR A . n A 1 58 PRO 58 6785 6785 PRO PRO A . n A 1 59 VAL 59 6786 6786 VAL VAL A . n A 1 60 GLY 60 6787 6787 GLY GLY A . n A 1 61 VAL 61 6788 6788 VAL VAL A . n A 1 62 LYS 62 6789 6789 LYS LYS A . n A 1 63 ALA 63 6790 6790 ALA ALA A . n A 1 64 THR 64 6791 6791 THR THR A . n A 1 65 ALA 65 6792 6792 ALA ALA A . n A 1 66 LEU 66 6793 6793 LEU LEU A . n A 1 67 TYR 67 6794 6794 TYR TYR A . n A 1 68 ASP 68 6795 6795 ASP ASP A . n A 1 69 HIS 69 6796 6796 HIS HIS A . n A 1 70 PRO 70 6797 6797 PRO PRO A . n A 1 71 THR 71 6798 6798 THR THR A . n A 1 72 PRO 72 6799 6799 PRO PRO A . n A 1 73 ALA 73 6800 6800 ALA ALA A . n A 1 74 ALA 74 6801 6801 ALA ALA A . n A 1 75 PHE 75 6802 6802 PHE PHE A . n A 1 76 ALA 76 6803 6803 ALA ALA A . n A 1 77 ARG 77 6804 6804 ARG ARG A . n A 1 78 HIS 78 6805 6805 HIS HIS A . n A 1 79 ILE 79 6806 6806 ILE ILE A . n A 1 80 ALA 80 6807 6807 ALA ALA A . n A 1 81 GLU 81 6808 6808 GLU GLU A . n A 1 82 SER 82 6809 6809 SER SER A . n A 1 83 LEU 83 6810 6810 LEU LEU A . n A 1 84 GLY 84 6811 6811 GLY GLY A . n A 1 85 ALA 85 6812 6812 ALA ALA A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email kira.weissman@univ-lorraine.fr _pdbx_contact_author.name_first Kira _pdbx_contact_author.name_last Weissman _pdbx_contact_author.name_mi J _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3012-2960 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PNS _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 6901 _pdbx_nonpoly_scheme.auth_seq_num 6813 _pdbx_nonpoly_scheme.pdb_mon_id PNS _pdbx_nonpoly_scheme.auth_mon_id PNS _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-03-22 2 'Structure model' 1 1 2023-03-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_entry_details.entry_id 8A7Z _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 acp5a-holo 1.0 ? mM '[U-13C; U-15N]' 1 'sodium phosphate' 100 ? mM 'natural abundance' 1 TCEP 0.5 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 3 NE A ARG 6734 ? ? CZ A ARG 6734 ? ? NH1 A ARG 6734 ? ? 123.71 120.30 3.41 0.50 N 2 3 NE A ARG 6804 ? ? CZ A ARG 6804 ? ? NH1 A ARG 6804 ? ? 123.78 120.30 3.48 0.50 N 3 4 NE A ARG 6734 ? ? CZ A ARG 6734 ? ? NH1 A ARG 6734 ? ? 124.23 120.30 3.93 0.50 N 4 4 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 124.00 120.30 3.70 0.50 N 5 4 NE A ARG 6756 ? ? CZ A ARG 6756 ? ? NH1 A ARG 6756 ? ? 123.34 120.30 3.04 0.50 N 6 7 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 125.14 120.30 4.84 0.50 N 7 8 NE A ARG 6734 ? ? CZ A ARG 6734 ? ? NH1 A ARG 6734 ? ? 123.57 120.30 3.27 0.50 N 8 8 NE A ARG 6756 ? ? CZ A ARG 6756 ? ? NH1 A ARG 6756 ? ? 123.47 120.30 3.17 0.50 N 9 9 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 124.16 120.30 3.86 0.50 N 10 9 NE A ARG 6804 ? ? CZ A ARG 6804 ? ? NH1 A ARG 6804 ? ? 123.68 120.30 3.38 0.50 N 11 11 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 123.47 120.30 3.17 0.50 N 12 12 NE A ARG 6756 ? ? CZ A ARG 6756 ? ? NH1 A ARG 6756 ? ? 123.72 120.30 3.42 0.50 N 13 13 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 123.61 120.30 3.31 0.50 N 14 14 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 124.71 120.30 4.41 0.50 N 15 16 NE A ARG 6734 ? ? CZ A ARG 6734 ? ? NH1 A ARG 6734 ? ? 123.65 120.30 3.35 0.50 N 16 16 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 124.55 120.30 4.25 0.50 N 17 16 NE A ARG 6804 ? ? CZ A ARG 6804 ? ? NH1 A ARG 6804 ? ? 123.65 120.30 3.35 0.50 N 18 18 NE A ARG 6734 ? ? CZ A ARG 6734 ? ? NH2 A ARG 6734 ? ? 124.41 120.30 4.11 0.50 N 19 18 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH2 A ARG 6744 ? ? 124.63 120.30 4.33 0.50 N 20 18 NE A ARG 6756 ? ? CZ A ARG 6756 ? ? NH1 A ARG 6756 ? ? 123.52 120.30 3.22 0.50 N 21 19 NE A ARG 6744 ? ? CZ A ARG 6744 ? ? NH1 A ARG 6744 ? ? 123.52 120.30 3.22 0.50 N 22 19 NE A ARG 6756 ? ? CZ A ARG 6756 ? ? NH1 A ARG 6756 ? ? 123.79 120.30 3.49 0.50 N 23 19 NE A ARG 6804 ? ? CZ A ARG 6804 ? ? NH1 A ARG 6804 ? ? 124.46 120.30 4.16 0.50 N 24 20 NE A ARG 6804 ? ? CZ A ARG 6804 ? ? NH1 A ARG 6804 ? ? 123.72 120.30 3.42 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 6785 ? ? -77.01 39.32 2 2 PRO A 6785 ? ? -78.01 42.44 3 3 PRO A 6785 ? ? -77.86 43.59 4 4 PRO A 6785 ? ? -77.07 39.00 5 5 SER A -1 ? ? -79.40 46.23 6 5 PRO A 6785 ? ? -78.17 48.85 7 6 ALA A 6732 ? ? -149.42 -77.61 8 6 PRO A 6785 ? ? -67.65 31.55 9 7 PRO A 6785 ? ? -78.93 43.94 10 8 PRO A 6785 ? ? -78.44 41.69 11 9 PRO A 6785 ? ? -77.06 37.91 12 11 PRO A 6785 ? ? -79.03 42.28 13 12 PRO A 6785 ? ? -78.82 47.51 14 13 PRO A 6785 ? ? -77.27 41.70 15 14 PRO A 6785 ? ? -79.21 47.32 16 15 PRO A 6785 ? ? -78.31 45.58 17 16 PRO A 6785 ? ? -78.35 40.73 18 17 PRO A 6785 ? ? -77.02 39.70 19 18 PRO A 6785 ? ? -78.81 43.38 20 19 PRO A 6785 ? ? -77.63 41.57 21 20 PRO A 6785 ? ? -78.53 47.12 # _pdbx_audit_support.funding_organization 'Agence Nationale de la Recherche (ANR)' _pdbx_audit_support.country France _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PNS _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PNS _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "4'-PHOSPHOPANTETHEINE" _pdbx_entity_nonpoly.comp_id PNS # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #