HEADER GENE REGULATION 22-JUN-22 8A8F TITLE CRYSTAL STRUCTURE OF GLC7 PHOSPHATASE IN COMPLEX WITH THE REGULATORY TITLE 2 REGION OF REF2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-2; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.16; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE GLC7 C-TERMINUS IS COVALENTLY LINKED TO CHAIN B COMPND 7 (REF2 348-405); COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA END FORMATION PROTEIN 2; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: TO TRAP THE GLC7 SUBSTRATE IN THE ACTIVE SITE, TWO RNA COMPND 13 POL II CTD REPEATS WERE FUSED C-TERMINALLY OF REF2 348-405. THE COMPND 14 SUBSTRATE WAS NOT VISIBLE IN THE CRYSTAL STRUCTURE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: GLC7, CID1, DIS2, YER133W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 STRAIN: ATCC 204508 / S288C; SOURCE 15 GENE: REF2, YDR195W, YD9346.06; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SER/THR PHOSPHATASE, REGULATORY SUBUNIT, RNA, TRANSCRIPTION KEYWDS 2 TERMINATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.CARMINATI,C.M.MANAV,D.BELLINI,L.A.PASSMORE REVDAT 2 12-JUN-24 8A8F 1 JRNL REVDAT 1 29-NOV-23 8A8F 0 JRNL AUTH M.CARMINATI,J.B.RODRIGUEZ-MOLINA,M.C.MANAV,D.BELLINI, JRNL AUTH 2 L.A.PASSMORE JRNL TITL A DIRECT INTERACTION BETWEEN CPF AND RNA POL II LINKS RNA 3' JRNL TITL 2 END PROCESSING TO TRANSCRIPTION. JRNL REF MOL.CELL V. 83 4461 2023 JRNL REFN ISSN 1097-2765 JRNL PMID 38029752 JRNL DOI 10.1016/J.MOLCEL.2023.11.004 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 40973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1200 - 4.5600 1.00 2751 161 0.1554 0.1745 REMARK 3 2 4.5600 - 3.6200 1.00 2638 162 0.1686 0.1840 REMARK 3 3 3.6200 - 3.1600 1.00 2587 166 0.2010 0.2580 REMARK 3 4 3.1600 - 2.8800 1.00 2640 114 0.2123 0.2334 REMARK 3 5 2.8700 - 2.6700 1.00 2606 135 0.2260 0.2349 REMARK 3 6 2.6700 - 2.5100 1.00 2598 116 0.2167 0.2658 REMARK 3 7 2.5100 - 2.3900 1.00 2589 140 0.2112 0.2637 REMARK 3 8 2.3900 - 2.2800 1.00 2584 144 0.2115 0.2537 REMARK 3 9 2.2800 - 2.1900 1.00 2505 169 0.2130 0.2696 REMARK 3 10 2.1900 - 2.1200 1.00 2594 121 0.2308 0.3085 REMARK 3 11 2.1200 - 2.0500 1.00 2577 115 0.2360 0.2952 REMARK 3 12 2.0500 - 1.9900 1.00 2569 141 0.2463 0.2796 REMARK 3 13 1.9900 - 1.9400 1.00 2570 133 0.2652 0.3303 REMARK 3 14 1.9400 - 1.8900 0.99 2542 132 0.2865 0.3572 REMARK 3 15 1.8900 - 1.8500 0.98 2533 141 0.3143 0.4224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123899. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 45.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.04671 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7QWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 % (V/V) 1,4-BUTANEDIOL AND 0.1 M REMARK 280 TRIS-HCL PH 8.5, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.71333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.42667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.42667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.71333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLN A 299 REMARK 465 LYS A 300 REMARK 465 SER A 301 REMARK 465 LEU A 302 REMARK 465 PRO A 303 REMARK 465 ARG A 304 REMARK 465 GLN A 305 REMARK 465 ALA A 306 REMARK 465 GLY A 307 REMARK 465 GLY A 308 REMARK 465 ARG A 309 REMARK 465 LYS A 310 REMARK 465 LYS A 311 REMARK 465 LYS A 312 REMARK 465 GLY B 407 REMARK 465 SER B 408 REMARK 465 GLY B 409 REMARK 465 SER B 410 REMARK 465 GLY B 411 REMARK 465 SER B 412 REMARK 465 GLY B 413 REMARK 465 SER B 414 REMARK 465 PRO B 415 REMARK 465 SER B 416 REMARK 465 TYR B 417 REMARK 465 SER B 418 REMARK 465 PRO B 419 REMARK 465 THR B 420 REMARK 465 SER B 421 REMARK 465 PRO B 422 REMARK 465 SER B 423 REMARK 465 TYR B 424 REMARK 465 SER B 425 REMARK 465 PRO B 426 REMARK 465 THR B 427 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN A 401 O HOH A 507 1.68 REMARK 500 O HOH A 606 O HOH A 607 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 126 CB CYS A 126 SG -0.135 REMARK 500 GLU A 217 CB GLU A 217 CG -0.143 REMARK 500 ARG A 245 CG ARG A 245 CD -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 63 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 GLU A 125 OE1 - CD - OE2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 100.45 -57.05 REMARK 500 ASP A 94 154.81 73.33 REMARK 500 ARG A 95 -52.25 70.20 REMARK 500 TYR A 143 -104.73 -130.91 REMARK 500 SER A 223 -149.32 60.94 REMARK 500 ALA A 246 -125.49 -134.69 REMARK 500 HIS A 247 -15.51 72.91 REMARK 500 LYS A 259 -110.19 62.80 REMARK 500 CYS A 272 -12.79 70.43 REMARK 500 LYS B 365 121.61 -34.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 362 LYS B 363 -145.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 80 0.05 SIDE CHAIN REMARK 500 GLU A 125 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 616 DISTANCE = 9.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 HIS A 65 NE2 96.0 REMARK 620 3 ASP A 91 OD2 85.8 104.4 REMARK 620 4 PO4 A 403 O1 172.4 91.5 93.2 REMARK 620 5 HOH A 572 O 94.4 88.9 166.6 84.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 91 OD2 REMARK 620 2 ASN A 123 OD1 95.3 REMARK 620 3 HIS A 172 NE2 84.9 81.8 REMARK 620 4 HIS A 247 ND1 165.8 96.1 88.3 REMARK 620 5 PO4 A 403 O2 95.7 85.8 167.7 93.5 REMARK 620 6 HOH A 507 O 70.7 155.4 115.8 101.3 75.9 REMARK 620 N 1 2 3 4 5 DBREF 8A8F A 1 312 UNP P32598 PP12_YEAST 1 312 DBREF 8A8F B 348 406 UNP P42073 REF2_YEAST 348 406 SEQADV 8A8F SER A 0 UNP P32598 EXPRESSION TAG SEQADV 8A8F GLY B 407 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 408 UNP P42073 EXPRESSION TAG SEQADV 8A8F GLY B 409 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 410 UNP P42073 EXPRESSION TAG SEQADV 8A8F GLY B 411 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 412 UNP P42073 EXPRESSION TAG SEQADV 8A8F GLY B 413 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 414 UNP P42073 EXPRESSION TAG SEQADV 8A8F PRO B 415 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 416 UNP P42073 EXPRESSION TAG SEQADV 8A8F TYR B 417 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 418 UNP P42073 EXPRESSION TAG SEQADV 8A8F PRO B 419 UNP P42073 EXPRESSION TAG SEQADV 8A8F THR B 420 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 421 UNP P42073 EXPRESSION TAG SEQADV 8A8F PRO B 422 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 423 UNP P42073 EXPRESSION TAG SEQADV 8A8F TYR B 424 UNP P42073 EXPRESSION TAG SEQADV 8A8F SER B 425 UNP P42073 EXPRESSION TAG SEQADV 8A8F PRO B 426 UNP P42073 EXPRESSION TAG SEQADV 8A8F THR B 427 UNP P42073 EXPRESSION TAG SEQRES 1 A 313 SER MET ASP SER GLN PRO VAL ASP VAL ASP ASN ILE ILE SEQRES 2 A 313 ASP ARG LEU LEU GLU VAL ARG GLY SER LYS PRO GLY GLN SEQRES 3 A 313 GLN VAL ASP LEU GLU GLU ASN GLU ILE ARG TYR LEU CYS SEQRES 4 A 313 SER LYS ALA ARG SER ILE PHE ILE LYS GLN PRO ILE LEU SEQRES 5 A 313 LEU GLU LEU GLU ALA PRO ILE LYS ILE CYS GLY ASP ILE SEQRES 6 A 313 HIS GLY GLN TYR TYR ASP LEU LEU ARG LEU PHE GLU TYR SEQRES 7 A 313 GLY GLY PHE PRO PRO GLU SER ASN TYR LEU PHE LEU GLY SEQRES 8 A 313 ASP TYR VAL ASP ARG GLY LYS GLN SER LEU GLU THR ILE SEQRES 9 A 313 CYS LEU LEU LEU ALA TYR LYS ILE LYS TYR PRO GLU ASN SEQRES 10 A 313 PHE PHE ILE LEU ARG GLY ASN HIS GLU CYS ALA SER ILE SEQRES 11 A 313 ASN ARG ILE TYR GLY PHE TYR ASP GLU CYS LYS ARG ARG SEQRES 12 A 313 TYR ASN ILE LYS LEU TRP LYS THR PHE THR ASP CYS PHE SEQRES 13 A 313 ASN CYS LEU PRO ILE ALA ALA ILE ILE ASP GLU LYS ILE SEQRES 14 A 313 PHE CYS MET HIS GLY GLY LEU SER PRO ASP LEU ASN SER SEQRES 15 A 313 MET GLU GLN ILE ARG ARG VAL MET ARG PRO THR ASP ILE SEQRES 16 A 313 PRO ASP VAL GLY LEU LEU CYS ASP LEU LEU TRP SER ASP SEQRES 17 A 313 PRO ASP LYS ASP ILE VAL GLY TRP SER GLU ASN ASP ARG SEQRES 18 A 313 GLY VAL SER PHE THR PHE GLY PRO ASP VAL VAL ASN ARG SEQRES 19 A 313 PHE LEU GLN LYS GLN ASP MET GLU LEU ILE CYS ARG ALA SEQRES 20 A 313 HIS GLN VAL VAL GLU ASP GLY TYR GLU PHE PHE SER LYS SEQRES 21 A 313 ARG GLN LEU VAL THR LEU PHE SER ALA PRO ASN TYR CYS SEQRES 22 A 313 GLY GLU PHE ASP ASN ALA GLY ALA MET MET SER VAL ASP SEQRES 23 A 313 GLU SER LEU LEU CYS SER PHE GLN ILE LEU LYS PRO ALA SEQRES 24 A 313 GLN LYS SER LEU PRO ARG GLN ALA GLY GLY ARG LYS LYS SEQRES 25 A 313 LYS SEQRES 1 B 80 ILE SER VAL GLN ASP SER ASN VAL GLN SER ILE LEU ARG SEQRES 2 B 80 ASN GLY LYS PRO LYS LYS ALA ARG ILE SER SER ILE LYS SEQRES 3 B 80 PHE LEU ASP ASP SER GLN LEU ILE LYS VAL TYR GLY ASP SEQRES 4 B 80 ASP LEU PRO ASN GLN GLY LEU GLN VAL SER PRO THR GLN SEQRES 5 B 80 LEU LYS LYS ILE LEU LYS PRO GLY SER GLY SER GLY SER SEQRES 6 B 80 GLY SER PRO SER TYR SER PRO THR SER PRO SER TYR SER SEQRES 7 B 80 PRO THR HET MN A 401 1 HET MN A 402 1 HET PO4 A 403 5 HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 3 MN 2(MN 2+) FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *121(H2 O) HELIX 1 AA1 ASP A 7 GLU A 17 1 11 HELIX 2 AA2 GLU A 30 GLN A 48 1 19 HELIX 3 AA3 GLN A 67 GLY A 79 1 13 HELIX 4 AA4 GLN A 98 TYR A 113 1 16 HELIX 5 AA5 CYS A 126 ARG A 131 1 6 HELIX 6 AA6 GLY A 134 TYR A 143 1 10 HELIX 7 AA7 ASN A 144 ASN A 156 1 13 HELIX 8 AA8 MET A 182 ARG A 187 1 6 HELIX 9 AA9 GLY A 198 SER A 206 1 9 HELIX 10 AB1 GLY A 227 ASP A 239 1 13 HELIX 11 AB2 ASN A 270 GLU A 274 5 5 HELIX 12 AB3 ASP B 376 GLN B 379 5 4 HELIX 13 AB4 SER B 396 LYS B 405 1 10 SHEET 1 AA1 6 LEU A 51 LEU A 54 0 SHEET 2 AA1 6 ALA A 161 ILE A 164 1 O ILE A 163 N LEU A 52 SHEET 3 AA1 6 ILE A 168 CYS A 170 -1 O CYS A 170 N ALA A 162 SHEET 4 AA1 6 LEU A 242 ARG A 245 1 O CYS A 244 N PHE A 169 SHEET 5 AA1 6 LEU A 262 LEU A 265 1 O LEU A 265 N ARG A 245 SHEET 6 AA1 6 TYR A 254 PHE A 257 -1 N GLU A 255 O THR A 264 SHEET 1 AA2 6 PHE A 117 ILE A 119 0 SHEET 2 AA2 6 TYR A 86 PHE A 88 1 N PHE A 88 O PHE A 118 SHEET 3 AA2 6 ILE A 58 CYS A 61 1 N LYS A 59 O LEU A 87 SHEET 4 AA2 6 GLY A 279 VAL A 284 -1 O VAL A 284 N ILE A 58 SHEET 5 AA2 6 LEU A 289 LEU A 295 -1 O LEU A 295 N GLY A 279 SHEET 6 AA2 6 LYS B 373 PHE B 374 1 O LYS B 373 N CYS A 290 SHEET 1 AA3 7 PHE A 117 ILE A 119 0 SHEET 2 AA3 7 TYR A 86 PHE A 88 1 N PHE A 88 O PHE A 118 SHEET 3 AA3 7 ILE A 58 CYS A 61 1 N LYS A 59 O LEU A 87 SHEET 4 AA3 7 GLY A 279 VAL A 284 -1 O VAL A 284 N ILE A 58 SHEET 5 AA3 7 LEU A 289 LEU A 295 -1 O LEU A 295 N GLY A 279 SHEET 6 AA3 7 ILE B 381 TYR B 384 1 O LYS B 382 N ILE A 294 SHEET 7 AA3 7 LEU B 393 VAL B 395 -1 O LEU B 393 N VAL B 383 SHEET 1 AA4 3 ASP A 207 PRO A 208 0 SHEET 2 AA4 3 PHE A 224 PHE A 226 1 O PHE A 226 N ASP A 207 SHEET 3 AA4 3 TRP A 215 GLU A 217 -1 N SER A 216 O THR A 225 LINK OD1 ASP A 63 MN MN A 401 1555 1555 2.10 LINK NE2 HIS A 65 MN MN A 401 1555 1555 2.13 LINK OD2 ASP A 91 MN MN A 401 1555 1555 2.22 LINK OD2 ASP A 91 MN MN A 402 1555 1555 2.04 LINK OD1 ASN A 123 MN MN A 402 1555 1555 2.15 LINK NE2 HIS A 172 MN MN A 402 1555 1555 2.19 LINK ND1 HIS A 247 MN MN A 402 1555 1555 2.26 LINK MN MN A 401 O1 PO4 A 403 1555 1555 2.12 LINK MN MN A 401 O HOH A 572 1555 1555 2.28 LINK MN MN A 402 O2 PO4 A 403 1555 1555 2.19 LINK MN MN A 402 O HOH A 507 1555 1555 2.24 CISPEP 1 ALA A 56 PRO A 57 0 1.32 CISPEP 2 PRO A 81 PRO A 82 0 2.00 CISPEP 3 ARG A 190 PRO A 191 0 4.29 CRYST1 90.230 90.230 101.140 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011083 0.006399 0.000000 0.00000 SCALE2 0.000000 0.012797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009887 0.00000