data_8A8N # _entry.id 8A8N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.360 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8A8N pdb_00008a8n 10.2210/pdb8a8n/pdb WWPDB D_1292123892 ? ? EMDB EMD-15234 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of self-assembling engineered protein nanocage (EPN) fused with hepatitis A pX protein' _pdbx_database_related.db_id EMD-15234 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8A8N _pdbx_database_status.recvd_initial_deposition_date 2022-06-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Duyvesteyn, H.M.E.' 1 0000-0002-4641-5442 'Stuart, D.I.' 2 0000-0002-3426-4210 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Plos Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first e1010543 _citation.page_last e1010543 _citation.title ;Nonlytic cellular release of hepatitis A virus requires dual capsid recruitment of the ESCRT-associated Bro1 domain proteins HD-PTP and ALIX. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1010543 _citation.pdbx_database_id_PubMed 35969644 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shirasaki, T.' 1 ? primary 'Feng, H.' 2 ? primary 'Duyvesteyn, H.M.E.' 3 ? primary 'Fusco, W.G.' 4 ? primary 'McKnight, K.L.' 5 ? primary 'Xie, L.' 6 ? primary 'Boyce, M.' 7 ? primary 'Kumar, S.' 8 ? primary 'Barouch-Bentov, R.' 9 ? primary 'Gonzalez-Lopez, O.' 10 ? primary 'McNamara, R.' 11 ? primary 'Wang, L.' 12 ? primary 'Hertel-Wulff, A.' 13 ? primary 'Chen, X.' 14 ? primary 'Einav, S.' 15 ? primary 'Duncan, J.A.' 16 ? primary 'Kapustina, M.' 17 ? primary 'Fry, E.E.' 18 ? primary 'Stuart, D.I.' 19 ? primary 'Lemon, S.M.' 20 0000-0003-1450-806X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8A8N _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8A8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description EPN-pX _entity.formula_weight 32934.234 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;Model just contains EPN-01 component since associated tag and pX could not be confidentally resolved.,Model just contains EPN-01 component since associated tag and pX could not be confidentally resolved. ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGARASGSKSGSGSDSGSKIEELFKKHKIVAVLRANSVEEAKKKALAVFLGGVHLIEITFTVPDADTVIKELSFLKEMGA IIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKA MKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPVEVAEKAKAFVEKIRGCTEQKLISEEDLMMSRIAAGD LESSVDDPRSEEDKRFESHIECRKPYKELRLEVGKQRLKYAQEELSNEVLPPPRKMKGLFSQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MGARASGSKSGSGSDSGSKIEELFKKHKIVAVLRANSVEEAKKKALAVFLGGVHLIEITFTVPDADTVIKELSFLKEMGA IIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKA MKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPVEVAEKAKAFVEKIRGCTEQKLISEEDLMMSRIAAGD LESSVDDPRSEEDKRFESHIECRKPYKELRLEVGKQRLKYAQEELSNEVLPPPRKMKGLFSQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 ALA n 1 4 ARG n 1 5 ALA n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 LYS n 1 10 SER n 1 11 GLY n 1 12 SER n 1 13 GLY n 1 14 SER n 1 15 ASP n 1 16 SER n 1 17 GLY n 1 18 SER n 1 19 LYS n 1 20 ILE n 1 21 GLU n 1 22 GLU n 1 23 LEU n 1 24 PHE n 1 25 LYS n 1 26 LYS n 1 27 HIS n 1 28 LYS n 1 29 ILE n 1 30 VAL n 1 31 ALA n 1 32 VAL n 1 33 LEU n 1 34 ARG n 1 35 ALA n 1 36 ASN n 1 37 SER n 1 38 VAL n 1 39 GLU n 1 40 GLU n 1 41 ALA n 1 42 LYS n 1 43 LYS n 1 44 LYS n 1 45 ALA n 1 46 LEU n 1 47 ALA n 1 48 VAL n 1 49 PHE n 1 50 LEU n 1 51 GLY n 1 52 GLY n 1 53 VAL n 1 54 HIS n 1 55 LEU n 1 56 ILE n 1 57 GLU n 1 58 ILE n 1 59 THR n 1 60 PHE n 1 61 THR n 1 62 VAL n 1 63 PRO n 1 64 ASP n 1 65 ALA n 1 66 ASP n 1 67 THR n 1 68 VAL n 1 69 ILE n 1 70 LYS n 1 71 GLU n 1 72 LEU n 1 73 SER n 1 74 PHE n 1 75 LEU n 1 76 LYS n 1 77 GLU n 1 78 MET n 1 79 GLY n 1 80 ALA n 1 81 ILE n 1 82 ILE n 1 83 GLY n 1 84 ALA n 1 85 GLY n 1 86 THR n 1 87 VAL n 1 88 THR n 1 89 SER n 1 90 VAL n 1 91 GLU n 1 92 GLN n 1 93 CYS n 1 94 ARG n 1 95 LYS n 1 96 ALA n 1 97 VAL n 1 98 GLU n 1 99 SER n 1 100 GLY n 1 101 ALA n 1 102 GLU n 1 103 PHE n 1 104 ILE n 1 105 VAL n 1 106 SER n 1 107 PRO n 1 108 HIS n 1 109 LEU n 1 110 ASP n 1 111 GLU n 1 112 GLU n 1 113 ILE n 1 114 SER n 1 115 GLN n 1 116 PHE n 1 117 CYS n 1 118 LYS n 1 119 GLU n 1 120 LYS n 1 121 GLY n 1 122 VAL n 1 123 PHE n 1 124 TYR n 1 125 MET n 1 126 PRO n 1 127 GLY n 1 128 VAL n 1 129 MET n 1 130 THR n 1 131 PRO n 1 132 THR n 1 133 GLU n 1 134 LEU n 1 135 VAL n 1 136 LYS n 1 137 ALA n 1 138 MET n 1 139 LYS n 1 140 LEU n 1 141 GLY n 1 142 HIS n 1 143 THR n 1 144 ILE n 1 145 LEU n 1 146 LYS n 1 147 LEU n 1 148 PHE n 1 149 PRO n 1 150 GLY n 1 151 GLU n 1 152 VAL n 1 153 VAL n 1 154 GLY n 1 155 PRO n 1 156 GLN n 1 157 PHE n 1 158 VAL n 1 159 LYS n 1 160 ALA n 1 161 MET n 1 162 LYS n 1 163 GLY n 1 164 PRO n 1 165 PHE n 1 166 PRO n 1 167 ASN n 1 168 VAL n 1 169 LYS n 1 170 PHE n 1 171 VAL n 1 172 PRO n 1 173 THR n 1 174 GLY n 1 175 GLY n 1 176 VAL n 1 177 ASN n 1 178 LEU n 1 179 ASP n 1 180 ASN n 1 181 VAL n 1 182 CYS n 1 183 GLU n 1 184 TRP n 1 185 PHE n 1 186 LYS n 1 187 ALA n 1 188 GLY n 1 189 VAL n 1 190 LEU n 1 191 ALA n 1 192 VAL n 1 193 GLY n 1 194 VAL n 1 195 GLY n 1 196 SER n 1 197 ALA n 1 198 LEU n 1 199 VAL n 1 200 LYS n 1 201 GLY n 1 202 THR n 1 203 PRO n 1 204 VAL n 1 205 GLU n 1 206 VAL n 1 207 ALA n 1 208 GLU n 1 209 LYS n 1 210 ALA n 1 211 LYS n 1 212 ALA n 1 213 PHE n 1 214 VAL n 1 215 GLU n 1 216 LYS n 1 217 ILE n 1 218 ARG n 1 219 GLY n 1 220 CYS n 1 221 THR n 1 222 GLU n 1 223 GLN n 1 224 LYS n 1 225 LEU n 1 226 ILE n 1 227 SER n 1 228 GLU n 1 229 GLU n 1 230 ASP n 1 231 LEU n 1 232 MET n 1 233 MET n 1 234 SER n 1 235 ARG n 1 236 ILE n 1 237 ALA n 1 238 ALA n 1 239 GLY n 1 240 ASP n 1 241 LEU n 1 242 GLU n 1 243 SER n 1 244 SER n 1 245 VAL n 1 246 ASP n 1 247 ASP n 1 248 PRO n 1 249 ARG n 1 250 SER n 1 251 GLU n 1 252 GLU n 1 253 ASP n 1 254 LYS n 1 255 ARG n 1 256 PHE n 1 257 GLU n 1 258 SER n 1 259 HIS n 1 260 ILE n 1 261 GLU n 1 262 CYS n 1 263 ARG n 1 264 LYS n 1 265 PRO n 1 266 TYR n 1 267 LYS n 1 268 GLU n 1 269 LEU n 1 270 ARG n 1 271 LEU n 1 272 GLU n 1 273 VAL n 1 274 GLY n 1 275 LYS n 1 276 GLN n 1 277 ARG n 1 278 LEU n 1 279 LYS n 1 280 TYR n 1 281 ALA n 1 282 GLN n 1 283 GLU n 1 284 GLU n 1 285 LEU n 1 286 SER n 1 287 ASN n 1 288 GLU n 1 289 VAL n 1 290 LEU n 1 291 PRO n 1 292 PRO n 1 293 PRO n 1 294 ARG n 1 295 LYS n 1 296 MET n 1 297 LYS n 1 298 GLY n 1 299 LEU n 1 300 PHE n 1 301 SER n 1 302 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 222 ? ? ? ? ? ? ? ? ? 'Human immunodeficiency virus type 1 BH10' 11678 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 223 302 ? ? ? ? ? ? ? ? ? 'Human immunodeficiency virus type 1 BH10' 11678 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293T ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q9WXS1_THEMA Q9WXS1 ? 1 ;KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVE SGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNL DNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGCTE ; 2 2 UNP V9Z3B5_9PICO V9Z3B5 ? 1 MMSRIAAGDLESSVDDPRSEEDKRFESHIECRKPYKELRLEVGKQRLKYAQEELSNEVLPPPRKMKGLFSQ 38 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8A8N A 19 ? 222 ? Q9WXS1 2 ? 205 ? 0 203 2 2 8A8N A 232 ? 302 ? V9Z3B5 38 ? 108 ? 213 283 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8A8N MET A 1 ? UNP Q9WXS1 ? ? 'initiating methionine' -18 1 1 8A8N GLY A 2 ? UNP Q9WXS1 ? ? 'expression tag' -17 2 1 8A8N ALA A 3 ? UNP Q9WXS1 ? ? 'expression tag' -16 3 1 8A8N ARG A 4 ? UNP Q9WXS1 ? ? 'expression tag' -15 4 1 8A8N ALA A 5 ? UNP Q9WXS1 ? ? 'expression tag' -14 5 1 8A8N SER A 6 ? UNP Q9WXS1 ? ? 'expression tag' -13 6 1 8A8N GLY A 7 ? UNP Q9WXS1 ? ? 'expression tag' -12 7 1 8A8N SER A 8 ? UNP Q9WXS1 ? ? 'expression tag' -11 8 1 8A8N LYS A 9 ? UNP Q9WXS1 ? ? 'expression tag' -10 9 1 8A8N SER A 10 ? UNP Q9WXS1 ? ? 'expression tag' -9 10 1 8A8N GLY A 11 ? UNP Q9WXS1 ? ? 'expression tag' -8 11 1 8A8N SER A 12 ? UNP Q9WXS1 ? ? 'expression tag' -7 12 1 8A8N GLY A 13 ? UNP Q9WXS1 ? ? 'expression tag' -6 13 1 8A8N SER A 14 ? UNP Q9WXS1 ? ? 'expression tag' -5 14 1 8A8N ASP A 15 ? UNP Q9WXS1 ? ? 'expression tag' -4 15 1 8A8N SER A 16 ? UNP Q9WXS1 ? ? 'expression tag' -3 16 1 8A8N GLY A 17 ? UNP Q9WXS1 ? ? 'expression tag' -2 17 1 8A8N SER A 18 ? UNP Q9WXS1 ? ? 'expression tag' -1 18 1 8A8N ILE A 20 ? UNP Q9WXS1 MET 3 conflict 1 19 1 8A8N LYS A 43 ? UNP Q9WXS1 GLU 26 conflict 24 20 1 8A8N LEU A 50 ? UNP Q9WXS1 GLU 33 conflict 31 21 1 8A8N MET A 78 ? UNP Q9WXS1 LYS 61 conflict 59 22 1 8A8N VAL A 204 ? UNP Q9WXS1 ASP 187 conflict 185 23 1 8A8N ALA A 207 ? UNP Q9WXS1 ARG 190 conflict 188 24 1 8A8N GLN A 223 ? UNP Q9WXS1 ? ? linker 204 25 1 8A8N LYS A 224 ? UNP Q9WXS1 ? ? linker 205 26 1 8A8N LEU A 225 ? UNP Q9WXS1 ? ? linker 206 27 1 8A8N ILE A 226 ? UNP Q9WXS1 ? ? linker 207 28 1 8A8N SER A 227 ? UNP Q9WXS1 ? ? linker 208 29 1 8A8N GLU A 228 ? UNP Q9WXS1 ? ? linker 209 30 1 8A8N GLU A 229 ? UNP Q9WXS1 ? ? linker 210 31 1 8A8N ASP A 230 ? UNP Q9WXS1 ? ? linker 211 32 1 8A8N LEU A 231 ? UNP Q9WXS1 ? ? linker 212 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8A8N _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8A8N _struct.title 'Structure of self-assembling engineered protein nanocage (EPN) fused with hepatitis A pX protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8A8N _struct_keywords.text 'hepatitis A, pX, VP1-pX, nanocage, icosahedral, protein nanoparticle, virus assembly, enveloped viruses, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 19 ? LYS A 28 ? LYS A 0 LYS A 9 1 ? 10 HELX_P HELX_P2 AA2 SER A 37 ? GLY A 51 ? SER A 18 GLY A 32 1 ? 15 HELX_P HELX_P3 AA3 ASP A 64 ? SER A 73 ? ASP A 45 SER A 54 1 ? 10 HELX_P HELX_P4 AA4 PHE A 74 ? GLY A 79 ? PHE A 55 GLY A 60 5 ? 6 HELX_P HELX_P5 AA5 SER A 89 ? SER A 99 ? SER A 70 SER A 80 1 ? 11 HELX_P HELX_P6 AA6 ASP A 110 ? GLY A 121 ? ASP A 91 GLY A 102 1 ? 12 HELX_P HELX_P7 AA7 THR A 130 ? LEU A 140 ? THR A 111 LEU A 121 1 ? 11 HELX_P HELX_P8 AA8 PRO A 149 ? GLY A 154 ? PRO A 130 GLY A 135 1 ? 6 HELX_P HELX_P9 AA9 GLY A 154 ? GLY A 163 ? GLY A 135 GLY A 144 1 ? 10 HELX_P HELX_P10 AB1 ASN A 180 ? GLY A 188 ? ASN A 161 GLY A 169 1 ? 9 HELX_P HELX_P11 AB2 GLY A 195 ? LYS A 200 ? GLY A 176 LYS A 181 1 ? 6 HELX_P HELX_P12 AB3 THR A 202 ? GLY A 219 ? THR A 183 GLY A 200 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 182 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 220 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 163 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PHE _struct_mon_prot_cis.label_seq_id 148 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PHE _struct_mon_prot_cis.auth_seq_id 129 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 149 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 130 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 81 ? GLY A 85 ? ILE A 62 GLY A 66 AA1 2 LEU A 55 ? THR A 59 ? LEU A 36 THR A 40 AA1 3 ILE A 29 ? LEU A 33 ? ILE A 10 LEU A 14 AA1 4 VAL A 192 ? VAL A 194 ? VAL A 173 VAL A 175 AA2 1 PHE A 103 ? VAL A 105 ? PHE A 84 VAL A 86 AA2 2 PHE A 123 ? MET A 125 ? PHE A 104 MET A 106 AA3 1 GLY A 127 ? VAL A 128 ? GLY A 108 VAL A 109 AA3 2 ILE A 144 ? LEU A 147 ? ILE A 125 LEU A 128 AA3 3 LYS A 169 ? PRO A 172 ? LYS A 150 PRO A 153 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 81 ? O ILE A 62 N ILE A 56 ? N ILE A 37 AA1 2 3 O GLU A 57 ? O GLU A 38 N ALA A 31 ? N ALA A 12 AA1 3 4 N VAL A 30 ? N VAL A 11 O VAL A 194 ? O VAL A 175 AA2 1 2 N ILE A 104 ? N ILE A 85 O MET A 125 ? O MET A 106 AA3 1 2 N VAL A 128 ? N VAL A 109 O LYS A 146 ? O LYS A 127 AA3 2 3 N LEU A 145 ? N LEU A 126 O LYS A 169 ? O LYS A 150 # _atom_sites.entry_id 8A8N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 ALA 3 -16 ? ? ? A . n A 1 4 ARG 4 -15 ? ? ? A . n A 1 5 ALA 5 -14 ? ? ? A . n A 1 6 SER 6 -13 ? ? ? A . n A 1 7 GLY 7 -12 ? ? ? A . n A 1 8 SER 8 -11 ? ? ? A . n A 1 9 LYS 9 -10 ? ? ? A . n A 1 10 SER 10 -9 ? ? ? A . n A 1 11 GLY 11 -8 ? ? ? A . n A 1 12 SER 12 -7 ? ? ? A . n A 1 13 GLY 13 -6 ? ? ? A . n A 1 14 SER 14 -5 ? ? ? A . n A 1 15 ASP 15 -4 ? ? ? A . n A 1 16 SER 16 -3 ? ? ? A . n A 1 17 GLY 17 -2 ? ? ? A . n A 1 18 SER 18 -1 ? ? ? A . n A 1 19 LYS 19 0 0 LYS LYS A . n A 1 20 ILE 20 1 1 ILE ILE A . n A 1 21 GLU 21 2 2 GLU GLU A . n A 1 22 GLU 22 3 3 GLU GLU A . n A 1 23 LEU 23 4 4 LEU LEU A . n A 1 24 PHE 24 5 5 PHE PHE A . n A 1 25 LYS 25 6 6 LYS LYS A . n A 1 26 LYS 26 7 7 LYS LYS A . n A 1 27 HIS 27 8 8 HIS HIS A . n A 1 28 LYS 28 9 9 LYS LYS A . n A 1 29 ILE 29 10 10 ILE ILE A . n A 1 30 VAL 30 11 11 VAL VAL A . n A 1 31 ALA 31 12 12 ALA ALA A . n A 1 32 VAL 32 13 13 VAL VAL A . n A 1 33 LEU 33 14 14 LEU LEU A . n A 1 34 ARG 34 15 15 ARG ARG A . n A 1 35 ALA 35 16 16 ALA ALA A . n A 1 36 ASN 36 17 17 ASN ASN A . n A 1 37 SER 37 18 18 SER SER A . n A 1 38 VAL 38 19 19 VAL VAL A . n A 1 39 GLU 39 20 20 GLU GLU A . n A 1 40 GLU 40 21 21 GLU GLU A . n A 1 41 ALA 41 22 22 ALA ALA A . n A 1 42 LYS 42 23 23 LYS LYS A . n A 1 43 LYS 43 24 24 LYS LYS A . n A 1 44 LYS 44 25 25 LYS LYS A . n A 1 45 ALA 45 26 26 ALA ALA A . n A 1 46 LEU 46 27 27 LEU LEU A . n A 1 47 ALA 47 28 28 ALA ALA A . n A 1 48 VAL 48 29 29 VAL VAL A . n A 1 49 PHE 49 30 30 PHE PHE A . n A 1 50 LEU 50 31 31 LEU LEU A . n A 1 51 GLY 51 32 32 GLY GLY A . n A 1 52 GLY 52 33 33 GLY GLY A . n A 1 53 VAL 53 34 34 VAL VAL A . n A 1 54 HIS 54 35 35 HIS HIS A . n A 1 55 LEU 55 36 36 LEU LEU A . n A 1 56 ILE 56 37 37 ILE ILE A . n A 1 57 GLU 57 38 38 GLU GLU A . n A 1 58 ILE 58 39 39 ILE ILE A . n A 1 59 THR 59 40 40 THR THR A . n A 1 60 PHE 60 41 41 PHE PHE A . n A 1 61 THR 61 42 42 THR THR A . n A 1 62 VAL 62 43 43 VAL VAL A . n A 1 63 PRO 63 44 44 PRO PRO A . n A 1 64 ASP 64 45 45 ASP ASP A . n A 1 65 ALA 65 46 46 ALA ALA A . n A 1 66 ASP 66 47 47 ASP ASP A . n A 1 67 THR 67 48 48 THR THR A . n A 1 68 VAL 68 49 49 VAL VAL A . n A 1 69 ILE 69 50 50 ILE ILE A . n A 1 70 LYS 70 51 51 LYS LYS A . n A 1 71 GLU 71 52 52 GLU GLU A . n A 1 72 LEU 72 53 53 LEU LEU A . n A 1 73 SER 73 54 54 SER SER A . n A 1 74 PHE 74 55 55 PHE PHE A . n A 1 75 LEU 75 56 56 LEU LEU A . n A 1 76 LYS 76 57 57 LYS LYS A . n A 1 77 GLU 77 58 58 GLU GLU A . n A 1 78 MET 78 59 59 MET MET A . n A 1 79 GLY 79 60 60 GLY GLY A . n A 1 80 ALA 80 61 61 ALA ALA A . n A 1 81 ILE 81 62 62 ILE ILE A . n A 1 82 ILE 82 63 63 ILE ILE A . n A 1 83 GLY 83 64 64 GLY GLY A . n A 1 84 ALA 84 65 65 ALA ALA A . n A 1 85 GLY 85 66 66 GLY GLY A . n A 1 86 THR 86 67 67 THR THR A . n A 1 87 VAL 87 68 68 VAL VAL A . n A 1 88 THR 88 69 69 THR THR A . n A 1 89 SER 89 70 70 SER SER A . n A 1 90 VAL 90 71 71 VAL VAL A . n A 1 91 GLU 91 72 72 GLU GLU A . n A 1 92 GLN 92 73 73 GLN GLN A . n A 1 93 CYS 93 74 74 CYS CYS A . n A 1 94 ARG 94 75 75 ARG ARG A . n A 1 95 LYS 95 76 76 LYS LYS A . n A 1 96 ALA 96 77 77 ALA ALA A . n A 1 97 VAL 97 78 78 VAL VAL A . n A 1 98 GLU 98 79 79 GLU GLU A . n A 1 99 SER 99 80 80 SER SER A . n A 1 100 GLY 100 81 81 GLY GLY A . n A 1 101 ALA 101 82 82 ALA ALA A . n A 1 102 GLU 102 83 83 GLU GLU A . n A 1 103 PHE 103 84 84 PHE PHE A . n A 1 104 ILE 104 85 85 ILE ILE A . n A 1 105 VAL 105 86 86 VAL VAL A . n A 1 106 SER 106 87 87 SER SER A . n A 1 107 PRO 107 88 88 PRO PRO A . n A 1 108 HIS 108 89 89 HIS HIS A . n A 1 109 LEU 109 90 90 LEU LEU A . n A 1 110 ASP 110 91 91 ASP ASP A . n A 1 111 GLU 111 92 92 GLU GLU A . n A 1 112 GLU 112 93 93 GLU GLU A . n A 1 113 ILE 113 94 94 ILE ILE A . n A 1 114 SER 114 95 95 SER SER A . n A 1 115 GLN 115 96 96 GLN GLN A . n A 1 116 PHE 116 97 97 PHE PHE A . n A 1 117 CYS 117 98 98 CYS CYS A . n A 1 118 LYS 118 99 99 LYS LYS A . n A 1 119 GLU 119 100 100 GLU GLU A . n A 1 120 LYS 120 101 101 LYS LYS A . n A 1 121 GLY 121 102 102 GLY GLY A . n A 1 122 VAL 122 103 103 VAL VAL A . n A 1 123 PHE 123 104 104 PHE PHE A . n A 1 124 TYR 124 105 105 TYR TYR A . n A 1 125 MET 125 106 106 MET MET A . n A 1 126 PRO 126 107 107 PRO PRO A . n A 1 127 GLY 127 108 108 GLY GLY A . n A 1 128 VAL 128 109 109 VAL VAL A . n A 1 129 MET 129 110 110 MET MET A . n A 1 130 THR 130 111 111 THR THR A . n A 1 131 PRO 131 112 112 PRO PRO A . n A 1 132 THR 132 113 113 THR THR A . n A 1 133 GLU 133 114 114 GLU GLU A . n A 1 134 LEU 134 115 115 LEU LEU A . n A 1 135 VAL 135 116 116 VAL VAL A . n A 1 136 LYS 136 117 117 LYS LYS A . n A 1 137 ALA 137 118 118 ALA ALA A . n A 1 138 MET 138 119 119 MET MET A . n A 1 139 LYS 139 120 120 LYS LYS A . n A 1 140 LEU 140 121 121 LEU LEU A . n A 1 141 GLY 141 122 122 GLY GLY A . n A 1 142 HIS 142 123 123 HIS HIS A . n A 1 143 THR 143 124 124 THR THR A . n A 1 144 ILE 144 125 125 ILE ILE A . n A 1 145 LEU 145 126 126 LEU LEU A . n A 1 146 LYS 146 127 127 LYS LYS A . n A 1 147 LEU 147 128 128 LEU LEU A . n A 1 148 PHE 148 129 129 PHE PHE A . n A 1 149 PRO 149 130 130 PRO PRO A . n A 1 150 GLY 150 131 131 GLY GLY A . n A 1 151 GLU 151 132 132 GLU GLU A . n A 1 152 VAL 152 133 133 VAL VAL A . n A 1 153 VAL 153 134 134 VAL VAL A . n A 1 154 GLY 154 135 135 GLY GLY A . n A 1 155 PRO 155 136 136 PRO PRO A . n A 1 156 GLN 156 137 137 GLN GLN A . n A 1 157 PHE 157 138 138 PHE PHE A . n A 1 158 VAL 158 139 139 VAL VAL A . n A 1 159 LYS 159 140 140 LYS LYS A . n A 1 160 ALA 160 141 141 ALA ALA A . n A 1 161 MET 161 142 142 MET MET A . n A 1 162 LYS 162 143 143 LYS LYS A . n A 1 163 GLY 163 144 144 GLY GLY A . n A 1 164 PRO 164 145 145 PRO PRO A . n A 1 165 PHE 165 146 146 PHE PHE A . n A 1 166 PRO 166 147 147 PRO PRO A . n A 1 167 ASN 167 148 148 ASN ASN A . n A 1 168 VAL 168 149 149 VAL VAL A . n A 1 169 LYS 169 150 150 LYS LYS A . n A 1 170 PHE 170 151 151 PHE PHE A . n A 1 171 VAL 171 152 152 VAL VAL A . n A 1 172 PRO 172 153 153 PRO PRO A . n A 1 173 THR 173 154 154 THR THR A . n A 1 174 GLY 174 155 155 GLY GLY A . n A 1 175 GLY 175 156 156 GLY GLY A . n A 1 176 VAL 176 157 157 VAL VAL A . n A 1 177 ASN 177 158 158 ASN ASN A . n A 1 178 LEU 178 159 159 LEU LEU A . n A 1 179 ASP 179 160 160 ASP ASP A . n A 1 180 ASN 180 161 161 ASN ASN A . n A 1 181 VAL 181 162 162 VAL VAL A . n A 1 182 CYS 182 163 163 CYS CYS A . n A 1 183 GLU 183 164 164 GLU GLU A . n A 1 184 TRP 184 165 165 TRP TRP A . n A 1 185 PHE 185 166 166 PHE PHE A . n A 1 186 LYS 186 167 167 LYS LYS A . n A 1 187 ALA 187 168 168 ALA ALA A . n A 1 188 GLY 188 169 169 GLY GLY A . n A 1 189 VAL 189 170 170 VAL VAL A . n A 1 190 LEU 190 171 171 LEU LEU A . n A 1 191 ALA 191 172 172 ALA ALA A . n A 1 192 VAL 192 173 173 VAL VAL A . n A 1 193 GLY 193 174 174 GLY GLY A . n A 1 194 VAL 194 175 175 VAL VAL A . n A 1 195 GLY 195 176 176 GLY GLY A . n A 1 196 SER 196 177 177 SER SER A . n A 1 197 ALA 197 178 178 ALA ALA A . n A 1 198 LEU 198 179 179 LEU LEU A . n A 1 199 VAL 199 180 180 VAL VAL A . n A 1 200 LYS 200 181 181 LYS LYS A . n A 1 201 GLY 201 182 182 GLY GLY A . n A 1 202 THR 202 183 183 THR THR A . n A 1 203 PRO 203 184 184 PRO PRO A . n A 1 204 VAL 204 185 185 VAL VAL A . n A 1 205 GLU 205 186 186 GLU GLU A . n A 1 206 VAL 206 187 187 VAL VAL A . n A 1 207 ALA 207 188 188 ALA ALA A . n A 1 208 GLU 208 189 189 GLU GLU A . n A 1 209 LYS 209 190 190 LYS LYS A . n A 1 210 ALA 210 191 191 ALA ALA A . n A 1 211 LYS 211 192 192 LYS LYS A . n A 1 212 ALA 212 193 193 ALA ALA A . n A 1 213 PHE 213 194 194 PHE PHE A . n A 1 214 VAL 214 195 195 VAL VAL A . n A 1 215 GLU 215 196 196 GLU GLU A . n A 1 216 LYS 216 197 197 LYS LYS A . n A 1 217 ILE 217 198 198 ILE ILE A . n A 1 218 ARG 218 199 199 ARG ARG A . n A 1 219 GLY 219 200 200 GLY GLY A . n A 1 220 CYS 220 201 201 CYS CYS A . n A 1 221 THR 221 202 ? ? ? A . n A 1 222 GLU 222 203 ? ? ? A . n A 1 223 GLN 223 204 ? ? ? A . n A 1 224 LYS 224 205 ? ? ? A . n A 1 225 LEU 225 206 ? ? ? A . n A 1 226 ILE 226 207 ? ? ? A . n A 1 227 SER 227 208 ? ? ? A . n A 1 228 GLU 228 209 ? ? ? A . n A 1 229 GLU 229 210 ? ? ? A . n A 1 230 ASP 230 211 ? ? ? A . n A 1 231 LEU 231 212 ? ? ? A . n A 1 232 MET 232 213 ? ? ? A . n A 1 233 MET 233 214 ? ? ? A . n A 1 234 SER 234 215 ? ? ? A . n A 1 235 ARG 235 216 ? ? ? A . n A 1 236 ILE 236 217 ? ? ? A . n A 1 237 ALA 237 218 ? ? ? A . n A 1 238 ALA 238 219 ? ? ? A . n A 1 239 GLY 239 220 ? ? ? A . n A 1 240 ASP 240 221 ? ? ? A . n A 1 241 LEU 241 222 ? ? ? A . n A 1 242 GLU 242 223 ? ? ? A . n A 1 243 SER 243 224 ? ? ? A . n A 1 244 SER 244 225 ? ? ? A . n A 1 245 VAL 245 226 ? ? ? A . n A 1 246 ASP 246 227 ? ? ? A . n A 1 247 ASP 247 228 ? ? ? A . n A 1 248 PRO 248 229 ? ? ? A . n A 1 249 ARG 249 230 ? ? ? A . n A 1 250 SER 250 231 ? ? ? A . n A 1 251 GLU 251 232 ? ? ? A . n A 1 252 GLU 252 233 ? ? ? A . n A 1 253 ASP 253 234 ? ? ? A . n A 1 254 LYS 254 235 ? ? ? A . n A 1 255 ARG 255 236 ? ? ? A . n A 1 256 PHE 256 237 ? ? ? A . n A 1 257 GLU 257 238 ? ? ? A . n A 1 258 SER 258 239 ? ? ? A . n A 1 259 HIS 259 240 ? ? ? A . n A 1 260 ILE 260 241 ? ? ? A . n A 1 261 GLU 261 242 ? ? ? A . n A 1 262 CYS 262 243 ? ? ? A . n A 1 263 ARG 263 244 ? ? ? A . n A 1 264 LYS 264 245 ? ? ? A . n A 1 265 PRO 265 246 ? ? ? A . n A 1 266 TYR 266 247 ? ? ? A . n A 1 267 LYS 267 248 ? ? ? A . n A 1 268 GLU 268 249 ? ? ? A . n A 1 269 LEU 269 250 ? ? ? A . n A 1 270 ARG 270 251 ? ? ? A . n A 1 271 LEU 271 252 ? ? ? A . n A 1 272 GLU 272 253 ? ? ? A . n A 1 273 VAL 273 254 ? ? ? A . n A 1 274 GLY 274 255 ? ? ? A . n A 1 275 LYS 275 256 ? ? ? A . n A 1 276 GLN 276 257 ? ? ? A . n A 1 277 ARG 277 258 ? ? ? A . n A 1 278 LEU 278 259 ? ? ? A . n A 1 279 LYS 279 260 ? ? ? A . n A 1 280 TYR 280 261 ? ? ? A . n A 1 281 ALA 281 262 ? ? ? A . n A 1 282 GLN 282 263 ? ? ? A . n A 1 283 GLU 283 264 ? ? ? A . n A 1 284 GLU 284 265 ? ? ? A . n A 1 285 LEU 285 266 ? ? ? A . n A 1 286 SER 286 267 ? ? ? A . n A 1 287 ASN 287 268 ? ? ? A . n A 1 288 GLU 288 269 ? ? ? A . n A 1 289 VAL 289 270 ? ? ? A . n A 1 290 LEU 290 271 ? ? ? A . n A 1 291 PRO 291 272 ? ? ? A . n A 1 292 PRO 292 273 ? ? ? A . n A 1 293 PRO 293 274 ? ? ? A . n A 1 294 ARG 294 275 ? ? ? A . n A 1 295 LYS 295 276 ? ? ? A . n A 1 296 MET 296 277 ? ? ? A . n A 1 297 LYS 297 278 ? ? ? A . n A 1 298 GLY 298 279 ? ? ? A . n A 1 299 LEU 299 280 ? ? ? A . n A 1 300 PHE 300 281 ? ? ? A . n A 1 301 SER 301 282 ? ? ? A . n A 1 302 GLN 302 283 ? ? ? A . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 4 smlemon@med.unc.edu Stanley Lemon M. 'principal investigator/group leader' 0000-0003-1450-806X 5 dave@strubi.ox.ac.uk David Stuart I. 'principal investigator/group leader' 0000-0002-3426-4210 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-10 2 'Structure model' 1 1 2022-08-24 3 'Structure model' 1 2 2022-08-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 3 'Structure model' '_citation_author.identifier_ORCID' # _em_3d_fitting.entry_id 8A8N _em_3d_fitting.id 1 _em_3d_fitting.details ;Rigid body fit monomer in chimera, generated biological unit then checked in coot and residues to be altered done so in coot followed by one cycle of rigid body refinement of entire icosahedral assembly in phenix, defining each monomeric unit as a separate body and considering ncs constraints to check for clashes. ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria 'Correlation coefficient' _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.details _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.pdb_entry_id 1 1 ? ? ? 5KP9 1 2 ? ? ? 7B3Y # _em_3d_reconstruction.entry_id 8A8N _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 1830 _em_3d_reconstruction.resolution 6.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details PBS _em_buffer.pH 7 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Associated model just contains EPN-01 component since associated tag and pX could not be confidentally resolved.' _em_entity_assembly.name EPN-pX _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 8A8N _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_magnification 92000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 293 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Blot time 4-5 s.' _em_vitrification.humidity 90 _em_vitrification.instrument 'GATAN CRYOPLUNGE 3' _em_vitrification.entry_id 8A8N _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 8A8N _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8A8N _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 9 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 70.81 _pdbx_validate_torsion.psi -7.30 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 0 ? CB ? A LYS 19 CB 2 1 Y 1 A LYS 0 ? CG ? A LYS 19 CG 3 1 Y 1 A LYS 0 ? CD ? A LYS 19 CD 4 1 Y 1 A LYS 0 ? CE ? A LYS 19 CE 5 1 Y 1 A LYS 0 ? NZ ? A LYS 19 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -18 ? A MET 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A ALA -16 ? A ALA 3 4 1 Y 1 A ARG -15 ? A ARG 4 5 1 Y 1 A ALA -14 ? A ALA 5 6 1 Y 1 A SER -13 ? A SER 6 7 1 Y 1 A GLY -12 ? A GLY 7 8 1 Y 1 A SER -11 ? A SER 8 9 1 Y 1 A LYS -10 ? A LYS 9 10 1 Y 1 A SER -9 ? A SER 10 11 1 Y 1 A GLY -8 ? A GLY 11 12 1 Y 1 A SER -7 ? A SER 12 13 1 Y 1 A GLY -6 ? A GLY 13 14 1 Y 1 A SER -5 ? A SER 14 15 1 Y 1 A ASP -4 ? A ASP 15 16 1 Y 1 A SER -3 ? A SER 16 17 1 Y 1 A GLY -2 ? A GLY 17 18 1 Y 1 A SER -1 ? A SER 18 19 1 Y 1 A THR 202 ? A THR 221 20 1 Y 1 A GLU 203 ? A GLU 222 21 1 Y 1 A GLN 204 ? A GLN 223 22 1 Y 1 A LYS 205 ? A LYS 224 23 1 Y 1 A LEU 206 ? A LEU 225 24 1 Y 1 A ILE 207 ? A ILE 226 25 1 Y 1 A SER 208 ? A SER 227 26 1 Y 1 A GLU 209 ? A GLU 228 27 1 Y 1 A GLU 210 ? A GLU 229 28 1 Y 1 A ASP 211 ? A ASP 230 29 1 Y 1 A LEU 212 ? A LEU 231 30 1 Y 1 A MET 213 ? A MET 232 31 1 Y 1 A MET 214 ? A MET 233 32 1 Y 1 A SER 215 ? A SER 234 33 1 Y 1 A ARG 216 ? A ARG 235 34 1 Y 1 A ILE 217 ? A ILE 236 35 1 Y 1 A ALA 218 ? A ALA 237 36 1 Y 1 A ALA 219 ? A ALA 238 37 1 Y 1 A GLY 220 ? A GLY 239 38 1 Y 1 A ASP 221 ? A ASP 240 39 1 Y 1 A LEU 222 ? A LEU 241 40 1 Y 1 A GLU 223 ? A GLU 242 41 1 Y 1 A SER 224 ? A SER 243 42 1 Y 1 A SER 225 ? A SER 244 43 1 Y 1 A VAL 226 ? A VAL 245 44 1 Y 1 A ASP 227 ? A ASP 246 45 1 Y 1 A ASP 228 ? A ASP 247 46 1 Y 1 A PRO 229 ? A PRO 248 47 1 Y 1 A ARG 230 ? A ARG 249 48 1 Y 1 A SER 231 ? A SER 250 49 1 Y 1 A GLU 232 ? A GLU 251 50 1 Y 1 A GLU 233 ? A GLU 252 51 1 Y 1 A ASP 234 ? A ASP 253 52 1 Y 1 A LYS 235 ? A LYS 254 53 1 Y 1 A ARG 236 ? A ARG 255 54 1 Y 1 A PHE 237 ? A PHE 256 55 1 Y 1 A GLU 238 ? A GLU 257 56 1 Y 1 A SER 239 ? A SER 258 57 1 Y 1 A HIS 240 ? A HIS 259 58 1 Y 1 A ILE 241 ? A ILE 260 59 1 Y 1 A GLU 242 ? A GLU 261 60 1 Y 1 A CYS 243 ? A CYS 262 61 1 Y 1 A ARG 244 ? A ARG 263 62 1 Y 1 A LYS 245 ? A LYS 264 63 1 Y 1 A PRO 246 ? A PRO 265 64 1 Y 1 A TYR 247 ? A TYR 266 65 1 Y 1 A LYS 248 ? A LYS 267 66 1 Y 1 A GLU 249 ? A GLU 268 67 1 Y 1 A LEU 250 ? A LEU 269 68 1 Y 1 A ARG 251 ? A ARG 270 69 1 Y 1 A LEU 252 ? A LEU 271 70 1 Y 1 A GLU 253 ? A GLU 272 71 1 Y 1 A VAL 254 ? A VAL 273 72 1 Y 1 A GLY 255 ? A GLY 274 73 1 Y 1 A LYS 256 ? A LYS 275 74 1 Y 1 A GLN 257 ? A GLN 276 75 1 Y 1 A ARG 258 ? A ARG 277 76 1 Y 1 A LEU 259 ? A LEU 278 77 1 Y 1 A LYS 260 ? A LYS 279 78 1 Y 1 A TYR 261 ? A TYR 280 79 1 Y 1 A ALA 262 ? A ALA 281 80 1 Y 1 A GLN 263 ? A GLN 282 81 1 Y 1 A GLU 264 ? A GLU 283 82 1 Y 1 A GLU 265 ? A GLU 284 83 1 Y 1 A LEU 266 ? A LEU 285 84 1 Y 1 A SER 267 ? A SER 286 85 1 Y 1 A ASN 268 ? A ASN 287 86 1 Y 1 A GLU 269 ? A GLU 288 87 1 Y 1 A VAL 270 ? A VAL 289 88 1 Y 1 A LEU 271 ? A LEU 290 89 1 Y 1 A PRO 272 ? A PRO 291 90 1 Y 1 A PRO 273 ? A PRO 292 91 1 Y 1 A PRO 274 ? A PRO 293 92 1 Y 1 A ARG 275 ? A ARG 294 93 1 Y 1 A LYS 276 ? A LYS 295 94 1 Y 1 A MET 277 ? A MET 296 95 1 Y 1 A LYS 278 ? A LYS 297 96 1 Y 1 A GLY 279 ? A GLY 298 97 1 Y 1 A LEU 280 ? A LEU 299 98 1 Y 1 A PHE 281 ? A PHE 300 99 1 Y 1 A SER 282 ? A SER 301 100 1 Y 1 A GLN 283 ? A GLN 302 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell HEK293T _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 46 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1803 _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Manual selection.' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1830 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION ? 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot ? ? 1 ? 8 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? RELION ? 1 ? ? 12 CLASSIFICATION ? RELION ? 1 ? ? 13 RECONSTRUCTION ? RELION ? 1 ? ? 14 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01-AI103083 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01-AI131685 2 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01-AI088255 3 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01-AI150095 4 'Wellcome Trust' 'United Kingdom' ALR00750 5 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MR/N00065X/1 6 # _pdbx_related_exp_data_set.ordinal 1 _pdbx_related_exp_data_set.data_reference 10.1101/2022.04.26.489493 _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.data_set_type 'other data' _pdbx_related_exp_data_set.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #