HEADER OXIDOREDUCTASE 27-JUN-22 8A91 TITLE CRYSTAL STRUCTURE OF A STAPHYLOCOCCAL ORTHOLOGUE OF CYP134A1 (CYPX) IN TITLE 2 COMPLEX WITH A HEME-COORDINATED FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYPX; COMPND 5 EC: 1.14.15.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: CYPX_1, NCTC5664_01270, CYPX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET47B KEYWDS CYPX, CYP134, STAPHYLOCOCCUS, FRAGMENT, HEME, CYCLIC LEUCINE, CLL, KEYWDS 2 DIKETOPIPERAZINE, IRON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SNEE,M.KATARIYA,C.LEVY REVDAT 2 07-FEB-24 8A91 1 REMARK REVDAT 1 05-JUL-23 8A91 0 JRNL AUTH M.SNEE JRNL TITL CRYSTAL STRUCTURE OF A STAPHYLOCOCCAL ORTHOLOGUE OF CYP134A1 JRNL TITL 2 (CYPX) IN COMPLEX WITH A HEME-COORDINATED FRAGMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 40038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2042 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.3800 - 4.5600 1.00 2702 136 0.1789 0.1932 REMARK 3 2 4.5600 - 3.6200 1.00 2594 139 0.1608 0.1595 REMARK 3 3 3.6200 - 3.1600 1.00 2572 133 0.1911 0.2107 REMARK 3 4 3.1600 - 2.8700 1.00 2549 137 0.2154 0.2516 REMARK 3 5 2.8700 - 2.6700 1.00 2548 126 0.2167 0.2408 REMARK 3 6 2.6700 - 2.5100 1.00 2513 136 0.2259 0.3023 REMARK 3 7 2.5100 - 2.3900 1.00 2529 139 0.2166 0.2364 REMARK 3 8 2.3900 - 2.2800 1.00 2523 138 0.2081 0.2569 REMARK 3 9 2.2800 - 2.1900 1.00 2494 132 0.2129 0.2413 REMARK 3 10 2.1900 - 2.1200 1.00 2499 150 0.2255 0.2341 REMARK 3 11 2.1200 - 2.0500 0.99 2468 148 0.2500 0.2381 REMARK 3 12 2.0500 - 1.9900 1.00 2502 129 0.2859 0.3311 REMARK 3 13 1.9900 - 1.9400 0.99 2510 143 0.3304 0.3403 REMARK 3 14 1.9400 - 1.8900 1.00 2503 125 0.3425 0.3912 REMARK 3 15 1.8900 - 1.8500 1.00 2490 131 0.3601 0.4179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3356 REMARK 3 ANGLE : 0.500 4557 REMARK 3 CHIRALITY : 0.038 503 REMARK 3 PLANARITY : 0.004 578 REMARK 3 DIHEDRAL : 6.978 457 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -17.7484 -23.3563 -6.0381 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.3045 REMARK 3 T33: 0.2358 T12: -0.0098 REMARK 3 T13: 0.0088 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 0.9454 L22: 0.7597 REMARK 3 L33: 3.9029 L12: 0.1182 REMARK 3 L13: 0.2795 L23: 0.4967 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0907 S13: 0.1378 REMARK 3 S21: -0.1095 S22: -0.0044 S23: -0.0300 REMARK 3 S31: -0.3881 S32: 0.1108 S33: 0.0084 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8A91 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1292123975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 55.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 2.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7OW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M LITHIUM SULFATE, 0.05M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE, 0.1M HEPES PH 7.8, 20% V/V PEG SMEAR HIGH, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.88400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.88400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.57700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.28700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.57700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.28700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.88400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.57700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.28700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.88400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.57700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.28700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 330 REMARK 465 LYS A 331 REMARK 465 SER A 332 REMARK 465 PRO A 333 REMARK 465 PHE A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 35 O HOH A 501 1.95 REMARK 500 NZ LYS A 258 O HOH A 502 2.14 REMARK 500 NZ LYS A 392 O HOH A 503 2.14 REMARK 500 O HOH A 668 O HOH A 701 2.17 REMARK 500 N LYS A 3 O HOH A 504 2.18 REMARK 500 NZ LYS A 377 O HOH A 505 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 88 O HOH A 704 8445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 71.77 -161.25 REMARK 500 LYS A 64 -95.01 -57.70 REMARK 500 ARG A 65 67.10 -67.01 REMARK 500 ALA A 66 -51.87 -149.60 REMARK 500 PRO A 68 -18.10 -47.85 REMARK 500 LYS A 71 -17.90 83.56 REMARK 500 ASP A 200 76.93 -101.17 REMARK 500 ASP A 212 -88.62 70.61 REMARK 500 ASN A 292 -108.33 40.58 REMARK 500 MET A 394 87.17 -152.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 706 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 707 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 708 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 709 DISTANCE = 6.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 350 SG REMARK 620 2 HEM A 401 NA 96.9 REMARK 620 3 HEM A 401 NB 85.9 88.4 REMARK 620 4 HEM A 401 NC 87.0 175.8 90.4 REMARK 620 5 HEM A 401 ND 96.3 89.4 177.1 91.7 REMARK 620 6 LC9 A 402 N1 178.0 83.8 96.1 92.4 81.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7OW9 RELATED DB: PDB REMARK 900 7OW9 CONTAINS THE SAME PROTEIN IN COMPLEX WITH ITS NATURAL SUBSTRATE REMARK 900 RELATED ID: 8A8L RELATED DB: PDB REMARK 900 8A8L CONTAINS THE SAME PROTEIN IN COMPLEX WITH A DIFFERENT FRAGMENT DBREF1 8A91 A 139 399 UNP A0A380DQV1_STAAU DBREF2 8A91 A A0A380DQV1 1 261 SEQADV 8A91 GLY A 0 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 1 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 2 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 3 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 4 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 5 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 6 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 7 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 8 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PHE A 9 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 10 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLN A 11 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ALA A 12 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 13 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 14 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 15 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 16 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PRO A 17 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 18 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PRO A 19 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 20 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PHE A 21 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 22 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PHE A 23 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 24 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ARG A 25 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 26 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 HIS A 27 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 28 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PRO A 29 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 30 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 HIS A 31 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 32 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 33 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 34 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 35 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 36 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 37 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ALA A 38 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 39 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PHE A 40 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 41 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 42 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 43 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 44 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 45 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 46 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 47 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 48 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 49 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 50 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 51 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 52 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 53 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 54 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 55 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 56 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PHE A 57 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 58 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 THR A 59 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 60 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 THR A 61 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 62 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ALA A 63 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 64 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ARG A 65 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ALA A 66 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 67 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PRO A 68 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 69 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 MET A 70 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 71 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 72 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ARG A 73 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 74 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 75 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ALA A 76 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLN A 77 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 MET A 78 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 79 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLY A 80 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLN A 81 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 82 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 HIS A 83 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 84 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 85 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 86 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 87 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 88 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ALA A 89 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 90 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 91 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 92 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLY A 93 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 MET A 94 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 THR A 95 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLY A 96 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 97 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 TYR A 98 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 99 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 100 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 101 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 102 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 MET A 103 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PRO A 104 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 105 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LEU A 106 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 107 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 108 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ARG A 109 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 THR A 110 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 111 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 112 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 113 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 114 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 115 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 116 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 HIS A 117 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 118 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 119 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 120 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 121 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLU A 122 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 123 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 124 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ILE A 125 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 126 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASN A 127 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ASP A 128 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PHE A 129 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLY A 130 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 LYS A 131 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 132 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 PHE A 133 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 ALA A 134 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 VAL A 135 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 GLN A 136 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 137 UNP A0A380DQV EXPRESSION TAG SEQADV 8A91 SER A 138 UNP A0A380DQV EXPRESSION TAG SEQRES 1 A 400 GLY SER LEU LYS VAL TYR ASN SER ILE PHE ASP GLN ALA SEQRES 2 A 400 TYR GLU ILE ASP PRO ILE PRO TYR PHE ASN PHE LEU ARG SEQRES 3 A 400 LYS HIS ASP PRO VAL HIS TYR GLU GLU SER ILE ASP ALA SEQRES 4 A 400 TYR PHE VAL SER LYS TYR LYS ASP VAL LYS TYR ILE LEU SEQRES 5 A 400 LYS ASN ASN ASP ILE PHE ASN THR LYS THR LEU ALA LYS SEQRES 6 A 400 ARG ALA GLU PRO VAL MET LYS ASP ARG VAL LEU ALA GLN SEQRES 7 A 400 MET SER GLY GLN GLU HIS LYS SER LYS LYS LYS ALA ILE SEQRES 8 A 400 LEU LYS GLY MET THR GLY LYS TYR LEU GLU ASN LEU MET SEQRES 9 A 400 PRO ILE LEU GLU LYS ARG THR ASN ASP ILE ILE ASN LYS SEQRES 10 A 400 HIS ILE GLU LYS LYS GLU ILE ASP ILE VAL ASN ASP PHE SEQRES 11 A 400 GLY LYS VAL PHE ALA VAL GLN SER SER MET ASP LEU LEU SEQRES 12 A 400 GLY ILE ASN LEU GLU ASN TYR GLU LYS ILE ARG GLU TRP SEQRES 13 A 400 HIS ASN GLY ILE ALA LYS PHE ILE THR SER PHE ASN LEU SEQRES 14 A 400 ASN ASP GLU GLU ILE LYS TYR SER LEU GLU CYS SER ASP SEQRES 15 A 400 LYS LEU GLU ASN TYR LEU MET PRO LEU ILE LYS ASP ARG SEQRES 16 A 400 LYS LYS SER THR LYS ASP ASP LEU ILE SER ILE LEU LEU SEQRES 17 A 400 GLU TYR LYS ASN ASP GLU ASN SER ILE SER ASP THR GLU SEQRES 18 A 400 ILE LEU ALA LEU SER LEU ASN VAL LEU LEU ALA ALA THR SEQRES 19 A 400 GLU PRO VAL ASP LYS THR LEU ALA TYR LEU PHE TYR ASN SEQRES 20 A 400 LEU LEU LYS ASN PRO GLU GLN PHE GLU SER VAL LYS ASN SEQRES 21 A 400 ASN PRO LYS LEU ILE LYS ASN ALA ILE ILE GLU THR LEU SEQRES 22 A 400 ARG TYR ASN SER PRO VAL GLN LEU ILE PRO ARG GLN VAL SEQRES 23 A 400 SER LYS PRO PHE ILE PHE ASN ASN THR GLU LEU GLN ALA SEQRES 24 A 400 GLY ASP THR VAL ILE CYS MET ILE GLY SER ALA ASN ARG SEQRES 25 A 400 ASP PRO GLU ALA TYR SER ASN PRO ASP GLU PHE ASN ILE SEQRES 26 A 400 HIS ARG SER SER ASP ASN LYS SER PRO PHE THR SER HIS SEQRES 27 A 400 SER GLN ASN LEU SER PHE GLY THR GLY VAL HIS THR CYS SEQRES 28 A 400 VAL GLY ALA SER PHE SER LEU ILE GLN LEU GLU MET VAL SEQRES 29 A 400 ALA ILE LEU LEU LEU LYS ARG LEU LYS ASN ILE LYS LEU SEQRES 30 A 400 LYS THR MET GLU ILE THR GLU HIS GLY ILE TYR THR ARG SEQRES 31 A 400 GLY PRO LYS SER MET VAL ILE SER PHE ASP HET HEM A 401 73 HET LC9 A 402 21 HET SO4 A 403 5 HET SO4 A 404 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM LC9 1H-INDOL-3-YLMETHANAMINE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 LC9 C9 H10 N2 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *209(H2 O) HELIX 1 AA1 ASP A 10 ASP A 16 1 7 HELIX 2 AA2 PRO A 17 ASP A 28 1 12 HELIX 3 AA3 LYS A 43 ASN A 53 1 11 HELIX 4 AA4 THR A 59 LYS A 64 1 6 HELIX 5 AA5 ALA A 66 LYS A 71 1 6 HELIX 6 AA6 VAL A 74 MET A 78 5 5 HELIX 7 AA7 SER A 79 GLY A 93 1 15 HELIX 8 AA8 THR A 95 ILE A 118 1 24 HELIX 9 AA9 PHE A 129 GLY A 143 1 15 HELIX 10 AB1 ASN A 145 GLU A 147 5 3 HELIX 11 AB2 ASN A 148 SER A 165 1 18 HELIX 12 AB3 ASN A 169 SER A 197 1 29 HELIX 13 AB4 ASP A 201 TYR A 209 1 9 HELIX 14 AB5 SER A 217 LYS A 249 1 33 HELIX 15 AB6 ASN A 250 ASN A 260 1 11 HELIX 16 AB7 LYS A 262 ASN A 275 1 14 HELIX 17 AB8 ILE A 306 ARG A 311 1 6 HELIX 18 AB9 GLY A 352 LEU A 371 1 20 SHEET 1 AA1 5 VAL A 30 GLU A 33 0 SHEET 2 AA1 5 ALA A 38 VAL A 41 -1 O PHE A 40 N HIS A 31 SHEET 3 AA1 5 THR A 301 MET A 305 1 O THR A 301 N TYR A 39 SHEET 4 AA1 5 LEU A 280 VAL A 285 -1 N ILE A 281 O CYS A 304 SHEET 5 AA1 5 PHE A 57 ASN A 58 -1 N ASN A 58 O GLN A 284 SHEET 1 AA2 3 GLU A 122 ASP A 124 0 SHEET 2 AA2 3 VAL A 395 SER A 397 -1 O ILE A 396 N ILE A 123 SHEET 3 AA2 3 LYS A 375 LEU A 376 -1 N LYS A 375 O SER A 397 SHEET 1 AA3 2 PHE A 289 PHE A 291 0 SHEET 2 AA3 2 THR A 294 LEU A 296 -1 O THR A 294 N PHE A 291 SHEET 1 AA4 2 GLU A 383 HIS A 384 0 SHEET 2 AA4 2 GLY A 390 PRO A 391 -1 O GLY A 390 N HIS A 384 LINK SG CYS A 350 FE HEM A 401 1555 1555 2.22 LINK FE HEM A 401 N1 LC9 A 402 1555 1555 2.13 CRYST1 81.154 108.574 105.768 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012322 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009455 0.00000