HEADER TRANSFERASE 28-JUN-22 8A9I TITLE PI3KC2A CORE IN COMPLEX WITH PITCOIN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4-PHOSPHATE 3-KINASE C2 DOMAIN- COMPND 3 CONTAINING SUBUNIT ALPHA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PI3K-C2-ALPHA,PTDINS-3-KINASE C2 SUBUNIT ALPHA,CPK-M, COMPND 6 PHOSPHOINOSITIDE 3-KINASE-C2-ALPHA,P170; COMPND 7 EC: 2.7.1.137,2.7.1.153,2.7.1.154,2.7.1.137,2.7.1.153,2.7.1.154, COMPND 8 2.7.1.137,2.7.1.153,2.7.1.154; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIK3C2A, CPK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PI3KC2 ALPHA, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.T.LO,Y.ROSKE,O.DAUMKE,V.HAUCKE REVDAT 4 31-JAN-24 8A9I 1 REMARK REVDAT 3 11-JAN-23 8A9I 1 JRNL REVDAT 2 28-SEP-22 8A9I 1 JRNL REVDAT 1 31-AUG-22 8A9I 0 JRNL AUTH W.T.LO,H.BELABED,M.KUCUKDISLI,J.METAG,Y.ROSKE,P.PROKOFEVA, JRNL AUTH 2 Y.OHASHI,A.HORATSCHECK,D.CIRILLO,M.KRAUSS,C.SCHMIED, JRNL AUTH 3 M.NEUENSCHWANDER,J.P.VON KRIES,G.MEDARD,B.KUSTER,O.PERISIC, JRNL AUTH 4 R.L.WILLIAMS,O.DAUMKE,B.PAYRASTRE,S.SEVERIN,M.NAZARE, JRNL AUTH 5 V.HAUCKE JRNL TITL DEVELOPMENT OF SELECTIVE INHIBITORS OF PHOSPHATIDYLINOSITOL JRNL TITL 2 3-KINASE C2 ALPHA. JRNL REF NAT.CHEM.BIOL. V. 19 18 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 36109648 JRNL DOI 10.1038/S41589-022-01118-Z REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 25315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1867 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.4140 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6513 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.388 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.400 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 51.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6697 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6237 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9069 ; 1.372 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14521 ; 0.565 ; 1.556 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 818 ; 5.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ;15.133 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1187 ;17.672 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1039 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7423 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1298 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 1301 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9835 -1.8078 -34.2193 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.0119 REMARK 3 T33: 0.1297 T12: -0.0107 REMARK 3 T13: -0.0319 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.5566 L22: 1.1778 REMARK 3 L33: 2.0731 L12: -0.0801 REMARK 3 L13: -0.0959 L23: 0.7968 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: 0.0424 S13: 0.0242 REMARK 3 S21: -0.0557 S22: 0.0427 S23: 0.0339 REMARK 3 S31: -0.0955 S32: -0.0535 S33: -0.1229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8A9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 47.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.020 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BI4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1MTRIS, 8-6% PEG3350, 0.2-0.1M REMARK 280 MGSO4, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.07850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.64600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.07850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.64600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 43 REMARK 465 MET A 44 REMARK 465 CYS A 45 REMARK 465 GLY A 46 REMARK 465 GLU A 47 REMARK 465 ASN A 48 REMARK 465 ASN A 266 REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 465 GLY A 269 REMARK 465 SER A 270 REMARK 465 VAL A 271 REMARK 465 MET A 272 REMARK 465 THR A 273 REMARK 465 ARG A 274 REMARK 465 HIS A 275 REMARK 465 SER A 276 REMARK 465 ALA A 277 REMARK 465 GLY A 278 REMARK 465 ALA A 279 REMARK 465 GLY A 280 REMARK 465 SER A 281 REMARK 465 GLY A 282 REMARK 465 ALA A 283 REMARK 465 SER A 284 REMARK 465 THR A 285 REMARK 465 GLY A 286 REMARK 465 CYS A 287 REMARK 465 PRO A 288 REMARK 465 ARG A 289 REMARK 465 GLY A 290 REMARK 465 SER A 291 REMARK 465 SER A 389 REMARK 465 SER A 390 REMARK 465 GLY A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ASP A 395 REMARK 465 SER A 396 REMARK 465 ASN A 397 REMARK 465 LYS A 398 REMARK 465 GLN A 399 REMARK 465 ARG A 400 REMARK 465 LYS A 401 REMARK 465 SER A 432 REMARK 465 SER A 433 REMARK 465 HIS A 434 REMARK 465 THR A 435 REMARK 465 ASN A 436 REMARK 465 SER A 437 REMARK 465 ILE A 438 REMARK 465 PRO A 439 REMARK 465 GLY A 440 REMARK 465 ALA A 441 REMARK 465 ILE A 442 REMARK 465 PRO A 443 REMARK 465 LYS A 444 REMARK 465 LYS A 445 REMARK 465 SER A 446 REMARK 465 TYR A 447 REMARK 465 VAL A 448 REMARK 465 MET A 449 REMARK 465 GLN A 478 REMARK 465 GLN A 479 REMARK 465 ASP A 480 REMARK 465 GLY A 822 REMARK 465 SER A 823 REMARK 465 GLY A 898 REMARK 465 SER A 899 REMARK 465 PHE A 900 REMARK 465 LYS A 901 REMARK 465 ARG A 902 REMARK 465 ASP A 903 REMARK 465 ARG A 904 REMARK 465 PHE A 1007 REMARK 465 ILE A 1008 REMARK 465 HIS A 1009 REMARK 465 ASN A 1010 REMARK 465 LEU A 1011 REMARK 465 ALA A 1012 REMARK 465 GLN A 1013 REMARK 465 LEU A 1014 REMARK 465 ARG A 1015 REMARK 465 PHE A 1016 REMARK 465 SER A 1017 REMARK 465 GLY A 1018 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 THR A 545 CG2 REMARK 470 TYR A 818 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 827 CG CD CE NZ REMARK 470 GLU A 842 CG CD OE1 OE2 REMARK 470 LYS A 889 CG CD CE NZ REMARK 470 MET A 896 CG SD CE REMARK 470 PHE A 897 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 499 O PHE A 503 1.98 REMARK 500 O PHE A 703 OD1 ASN A 707 2.05 REMARK 500 NZ LYS A 669 O HOH A 1201 2.10 REMARK 500 OD1 ASN A 837 CB ALA A 846 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 4 CB - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 ASN A 293 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 499 CG - CD - NE ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 309 -60.12 -102.79 REMARK 500 ALA A 353 86.97 -166.32 REMARK 500 GLU A 375 33.47 -96.64 REMARK 500 PRO A 715 3.30 -69.31 REMARK 500 GLN A 977 72.13 40.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 124 0.11 SIDE CHAIN REMARK 500 ARG A 451 0.12 SIDE CHAIN REMARK 500 ARG A 499 0.10 SIDE CHAIN REMARK 500 ARG A 661 0.10 SIDE CHAIN REMARK 500 ARG A 682 0.16 SIDE CHAIN REMARK 500 ARG A 689 0.08 SIDE CHAIN REMARK 500 ARG A 791 0.09 SIDE CHAIN REMARK 500 ARG A 797 0.19 SIDE CHAIN REMARK 500 ARG A 812 0.10 SIDE CHAIN REMARK 500 ARG A 991 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7Z74 RELATED DB: PDB REMARK 900 RELATED ID: 7Z75 RELATED DB: PDB DBREF 8A9I A 1 266 UNP Q61194 P3C2A_MOUSE 375 532 DBREF 8A9I A 271 275 UNP Q61194 P3C2A_MOUSE 545 549 DBREF 8A9I A 284 1018 UNP Q61194 P3C2A_MOUSE 666 1400 SEQADV 8A9I GLY A 1 UNP Q61194 PHE 375 ENGINEERED MUTATION SEQADV 8A9I ALA A 2 UNP Q61194 GLU 376 ENGINEERED MUTATION SEQADV 8A9I GLY A 267 UNP Q61194 LINKER SEQADV 8A9I SER A 268 UNP Q61194 LINKER SEQADV 8A9I GLY A 269 UNP Q61194 LINKER SEQADV 8A9I SER A 270 UNP Q61194 LINKER SEQADV 8A9I SER A 276 UNP Q61194 LINKER SEQADV 8A9I ALA A 277 UNP Q61194 LINKER SEQADV 8A9I GLY A 278 UNP Q61194 LINKER SEQADV 8A9I ALA A 279 UNP Q61194 LINKER SEQADV 8A9I GLY A 280 UNP Q61194 LINKER SEQADV 8A9I SER A 281 UNP Q61194 LINKER SEQADV 8A9I GLY A 282 UNP Q61194 LINKER SEQADV 8A9I ALA A 283 UNP Q61194 LINKER SEQADV 8A9I GLY A 286 UNP Q61194 ALA 668 CONFLICT SEQADV 8A9I ALA A 353 UNP Q61194 PHE 735 CONFLICT SEQADV 8A9I ALA A 354 UNP Q61194 PHE 736 CONFLICT SEQADV 8A9I ALA A 427 UNP Q61194 LEU 809 ENGINEERED MUTATION SEQRES 1 A 910 GLY ALA VAL GLN ASN ASP GLU VAL ALA ALA PHE CYS GLN SEQRES 2 A 910 SER ILE MET LYS LEU LYS THR LYS PHE PRO TYR THR ASP SEQRES 3 A 910 HIS CYS THR ASN PRO GLY TYR LEU LEU SER PRO VAL THR SEQRES 4 A 910 VAL GLN ARG ASN MET CYS GLY GLU ASN ALA SER VAL LYS SEQRES 5 A 910 VAL SER ILE GLU ILE GLU GLY LEU GLN LEU PRO VAL THR SEQRES 6 A 910 PHE THR CYS ASP VAL SER SER THR VAL GLU ILE ILE ILE SEQRES 7 A 910 MET GLN ALA LEU CYS TRP VAL HIS ASP ASP LEU ASN GLN SEQRES 8 A 910 VAL ASP VAL GLY SER TYR ILE LEU LYS VAL CYS GLY GLN SEQRES 9 A 910 GLU GLU VAL LEU GLN ASN ASN HIS CYS LEU GLY SER HIS SEQRES 10 A 910 GLU HIS ILE GLN ASN CYS ARG LYS TRP ASP THR GLU ILE SEQRES 11 A 910 LYS LEU GLN LEU LEU THR LEU SER ALA MET CYS GLN ASN SEQRES 12 A 910 LEU ALA ARG THR ALA GLU ASP ASP GLU ALA PRO VAL ASP SEQRES 13 A 910 LEU ASN GLY SER GLY SER VAL MET THR ARG HIS SER ALA SEQRES 14 A 910 GLY ALA GLY SER GLY ALA SER THR GLY CYS PRO ARG GLY SEQRES 15 A 910 SER ARG ASN ILE LYS GLU ALA TRP THR ALA THR GLU GLN SEQRES 16 A 910 LEU GLN PHE THR VAL TYR ALA ALA HIS GLY ILE SER SER SEQRES 17 A 910 ASN TRP VAL SER ASN TYR GLU LYS TYR TYR LEU ILE CYS SEQRES 18 A 910 SER LEU SER HIS ASN GLY LYS ASP LEU PHE LYS PRO ILE SEQRES 19 A 910 GLN SER LYS LYS VAL GLY THR TYR LYS ASN ALA ALA TYR SEQRES 20 A 910 LEU ILE LYS TRP ASP GLU LEU ILE ILE PHE PRO ILE GLN SEQRES 21 A 910 ILE SER GLN LEU PRO LEU GLU SER VAL LEU HIS LEU THR SEQRES 22 A 910 LEU PHE GLY VAL LEU ASN GLN SER SER GLY SER SER PRO SEQRES 23 A 910 ASP SER ASN LYS GLN ARG LYS GLY PRO GLU ALA LEU GLY SEQRES 24 A 910 LYS VAL SER LEU THR LEU PHE ASP PHE LYS ARG PHE LEU SEQRES 25 A 910 THR CYS GLY THR LYS LEU ALA TYR LEU TRP THR SER SER SEQRES 26 A 910 HIS THR ASN SER ILE PRO GLY ALA ILE PRO LYS LYS SER SEQRES 27 A 910 TYR VAL MET GLU ARG ILE VAL LEU GLN VAL ASP PHE PRO SEQRES 28 A 910 SER PRO ALA PHE ASP ILE ILE TYR THR SER PRO GLN ILE SEQRES 29 A 910 ASP ARG ASN ILE ILE GLN GLN ASP LYS LEU GLU THR LEU SEQRES 30 A 910 GLU SER ASP ILE LYS GLY LYS LEU LEU ASP ILE ILE HIS SEQRES 31 A 910 ARG ASP SER SER PHE GLY LEU SER LYS GLU ASP LYS VAL SEQRES 32 A 910 PHE LEU TRP GLU ASN ARG TYR TYR CYS LEU LYS HIS PRO SEQRES 33 A 910 ASN CYS LEU PRO LYS ILE LEU ALA SER ALA PRO ASN TRP SEQRES 34 A 910 LYS TRP ALA ASN LEU ALA LYS THR TYR SER LEU LEU HIS SEQRES 35 A 910 GLN TRP PRO PRO LEU CYS PRO LEU ALA ALA LEU GLU LEU SEQRES 36 A 910 LEU ASP ALA LYS PHE ALA ASP GLN GLU VAL ARG SER LEU SEQRES 37 A 910 ALA VAL SER TRP MET GLU ALA ILE SER ASP ASP GLU LEU SEQRES 38 A 910 ALA ASP LEU LEU PRO GLN PHE VAL GLN ALA LEU LYS TYR SEQRES 39 A 910 GLU ILE TYR LEU ASN SER SER LEU VAL ARG PHE LEU LEU SEQRES 40 A 910 SER ARG ALA LEU GLY ASN ILE GLN ILE ALA HIS SER LEU SEQRES 41 A 910 TYR TRP LEU LEU LYS ASP ALA LEU HIS ASP THR HIS PHE SEQRES 42 A 910 GLY SER ARG TYR GLU HIS VAL LEU GLY ALA LEU LEU SER SEQRES 43 A 910 VAL GLY GLY LYS GLY LEU ARG GLU GLU LEU SER LYS GLN SEQRES 44 A 910 MET LYS LEU VAL GLN LEU LEU GLY GLY VAL ALA GLU LYS SEQRES 45 A 910 VAL ARG GLN ALA SER GLY SER THR ARG GLN VAL VAL LEU SEQRES 46 A 910 GLN LYS SER MET GLU ARG VAL GLN SER PHE PHE LEU ARG SEQRES 47 A 910 ASN LYS CYS ARG LEU PRO LEU LYS PRO SER LEU VAL ALA SEQRES 48 A 910 LYS GLU LEU ASN ILE LYS SER CYS SER PHE PHE SER SER SEQRES 49 A 910 ASN ALA MET PRO LEU LYS VAL THR MET VAL ASN ALA ASP SEQRES 50 A 910 PRO LEU GLY GLU GLU ILE ASN VAL MET PHE LYS VAL GLY SEQRES 51 A 910 GLU ASP LEU ARG GLN ASP MET LEU ALA LEU GLN MET ILE SEQRES 52 A 910 LYS ILE MET ASP LYS ILE TRP LEU LYS GLU GLY LEU ASP SEQRES 53 A 910 LEU ARG MET VAL ILE PHE ARG CYS LEU SER THR GLY ARG SEQRES 54 A 910 ASP ARG GLY MET VAL GLU LEU VAL PRO ALA SER ASP THR SEQRES 55 A 910 LEU ARG LYS ILE GLN VAL GLU TYR GLY VAL THR GLY SER SEQRES 56 A 910 PHE LYS ASP LYS PRO LEU ALA GLU TRP LEU ARG LYS TYR SEQRES 57 A 910 ASN PRO SER GLU GLU GLU TYR GLU LYS ALA SER GLU ASN SEQRES 58 A 910 PHE ILE TYR SER CYS ALA GLY CYS CYS VAL ALA THR TYR SEQRES 59 A 910 VAL LEU GLY ILE CYS ASP ARG HIS ASN ASP ASN ILE MET SEQRES 60 A 910 LEU ARG SER THR GLY HIS MET PHE HIS ILE ASP PHE GLY SEQRES 61 A 910 LYS PHE LEU GLY HIS ALA GLN MET PHE GLY SER PHE LYS SEQRES 62 A 910 ARG ASP ARG ALA PRO PHE VAL LEU THR SER ASP MET ALA SEQRES 63 A 910 TYR VAL ILE ASN GLY GLY GLU LYS PRO THR ILE ARG PHE SEQRES 64 A 910 GLN LEU PHE VAL ASP LEU CYS CYS GLN ALA TYR ASN LEU SEQRES 65 A 910 ILE ARG LYS GLN THR ASN LEU PHE LEU ASN LEU LEU SER SEQRES 66 A 910 LEU MET ILE PRO SER GLY LEU PRO GLU LEU THR SER ILE SEQRES 67 A 910 GLN ASP LEU LYS TYR VAL ARG ASP ALA LEU GLN PRO GLN SEQRES 68 A 910 THR THR ASP ALA GLU ALA THR ILE PHE PHE THR ARG LEU SEQRES 69 A 910 ILE GLU SER SER LEU GLY SER ILE ALA THR LYS PHE ASN SEQRES 70 A 910 PHE PHE ILE HIS ASN LEU ALA GLN LEU ARG PHE SER GLY HET TSW A1101 29 HET EDO A1102 4 HET EDO A1103 4 HET SO4 A1104 5 HETNAM TSW 2-[4-OXIDANYLIDENE-3-(2-PHENYLETHYL)PTERIDIN-2- HETNAM 2 TSW YL]SULFANYL-~{N}-(1,3-THIAZOL-2-YL)ETHANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 TSW C19 H16 N6 O2 S2 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *65(H2 O) HELIX 1 AA1 VAL A 3 LYS A 19 1 17 HELIX 2 AA2 THR A 20 PHE A 22 5 3 HELIX 3 AA3 THR A 73 HIS A 86 1 14 HELIX 4 AA4 ASP A 93 GLY A 95 5 3 HELIX 5 AA5 CYS A 113 SER A 116 5 4 HELIX 6 AA6 HIS A 117 ASP A 127 1 11 HELIX 7 AA7 THR A 147 ALA A 153 1 7 HELIX 8 AA8 SER A 315 ASN A 321 1 7 HELIX 9 AA9 SER A 370 LEU A 372 5 3 HELIX 10 AB1 ILE A 489 HIS A 498 1 10 HELIX 11 AB2 SER A 506 ASN A 516 1 11 HELIX 12 AB3 ARG A 517 CYS A 520 5 4 HELIX 13 AB4 HIS A 523 ASN A 525 5 3 HELIX 14 AB5 CYS A 526 ALA A 532 1 7 HELIX 15 AB6 LYS A 538 ASN A 541 5 4 HELIX 16 AB7 LEU A 542 HIS A 550 1 9 HELIX 17 AB8 CYS A 556 LEU A 561 1 6 HELIX 18 AB9 GLU A 562 ASP A 565 5 4 HELIX 19 AC1 ASP A 570 GLU A 582 1 13 HELIX 20 AC2 SER A 585 ALA A 590 1 6 HELIX 21 AC3 LEU A 592 ALA A 599 1 8 HELIX 22 AC4 LEU A 600 GLU A 603 5 4 HELIX 23 AC5 SER A 608 ASN A 621 1 14 HELIX 24 AC6 ASN A 621 LEU A 636 1 16 HELIX 25 AC7 PHE A 641 GLY A 657 1 17 HELIX 26 AC8 GLY A 657 GLN A 683 1 27 HELIX 27 AC9 SER A 685 MET A 697 1 13 HELIX 28 AD1 MET A 697 ASN A 707 1 11 HELIX 29 AD2 LEU A 761 LYS A 780 1 20 HELIX 30 AD3 LEU A 811 TYR A 818 1 8 HELIX 31 AD4 LYS A 827 ASN A 837 1 11 HELIX 32 AD5 SER A 839 LEU A 864 1 26 HELIX 33 AD6 THR A 910 GLY A 919 1 10 HELIX 34 AD7 THR A 924 LYS A 943 1 20 HELIX 35 AD8 GLN A 944 LEU A 954 1 11 HELIX 36 AD9 MET A 955 GLY A 959 5 5 HELIX 37 AE1 ILE A 966 GLN A 977 1 12 HELIX 38 AE2 THR A 981 GLY A 998 1 18 HELIX 39 AE3 SER A 999 PHE A 1004 5 6 SHEET 1 AA1 2 LEU A 34 LEU A 35 0 SHEET 2 AA1 2 GLU A 106 VAL A 107 1 O VAL A 107 N LEU A 34 SHEET 1 AA2 4 VAL A 64 ASP A 69 0 SHEET 2 AA2 4 SER A 50 GLU A 56 -1 N VAL A 51 O CYS A 68 SHEET 3 AA2 4 ILE A 130 THR A 136 1 O ILE A 130 N SER A 54 SHEET 4 AA2 4 TYR A 97 VAL A 101 -1 N ILE A 98 O LEU A 135 SHEET 1 AA3 2 ASN A 293 GLU A 296 0 SHEET 2 AA3 2 PHE A 463 ILE A 466 1 O ASP A 464 N LYS A 295 SHEET 1 AA4 4 LEU A 356 GLN A 368 0 SHEET 2 AA4 4 GLN A 303 HIS A 312 -1 N LEU A 304 O ILE A 367 SHEET 3 AA4 4 ILE A 452 PHE A 458 -1 O GLN A 455 N ALA A 310 SHEET 4 AA4 4 GLY A 423 LEU A 429 -1 N ALA A 427 O LEU A 454 SHEET 1 AA5 4 LYS A 336 GLN A 343 0 SHEET 2 AA5 4 TYR A 322 HIS A 333 -1 N CYS A 329 O ILE A 342 SHEET 3 AA5 4 VAL A 377 LEU A 386 -1 O HIS A 379 N SER A 330 SHEET 4 AA5 4 GLU A 404 THR A 412 -1 O LEU A 411 N LEU A 378 SHEET 1 AA6 4 CYS A 709 ARG A 710 0 SHEET 2 AA6 4 VAL A 718 LEU A 722 -1 O ALA A 719 N CYS A 709 SHEET 3 AA6 4 LEU A 737 ASN A 743 -1 O VAL A 742 N GLU A 721 SHEET 4 AA6 4 SER A 728 PHE A 729 -1 N SER A 728 O LYS A 738 SHEET 1 AA7 6 CYS A 709 ARG A 710 0 SHEET 2 AA7 6 VAL A 718 LEU A 722 -1 O ALA A 719 N CYS A 709 SHEET 3 AA7 6 LEU A 737 ASN A 743 -1 O VAL A 742 N GLU A 721 SHEET 4 AA7 6 ILE A 751 VAL A 757 -1 O ILE A 751 N MET A 741 SHEET 5 AA7 6 ARG A 799 GLU A 803 -1 O VAL A 802 N MET A 754 SHEET 6 AA7 6 CYS A 792 SER A 794 -1 N LEU A 793 O MET A 801 SHEET 1 AA8 3 SER A 808 THR A 810 0 SHEET 2 AA8 3 ILE A 874 ARG A 877 -1 O LEU A 876 N ASP A 809 SHEET 3 AA8 3 MET A 882 HIS A 884 -1 O PHE A 883 N MET A 875 CRYST1 56.157 133.292 152.460 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006559 0.00000