HEADER DNA BINDING PROTEIN 01-JUL-22 8AAJ TITLE CRYSTAL STRUCTURE OF THE PYROCOCCUS ABYSSI RPA (APO FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION FACTOR A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: MUTATION T2S FROM REFERENCE SEQUENCE GENBANK: COMPND 6 CCE69663.1 TO IMPROVE EXPRESSION; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RPA32 SUBUNIT OF THE HETERO-OLIGOMERIC COMPLEX INVOLVED IN COMPND 9 HOMOLOGOUS RECOMBINATION; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: MUTATION OF SER AFTER FIRST M FROM REFERENCE SEQUENCE COMPND 13 NCBI REFERENCE SEQUENCE: WP_048146526.1 TO IMPROVE EXPRESSION; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: RPA14 SUBUNIT OF THE HETERO-OLIGOMERIC COMPLEX INVOLVED IN COMPND 16 HOMOLOGOUS RECOMBINATION; COMPND 17 CHAIN: C; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: PAB2163; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSFDUET(+); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 11 ORGANISM_TAXID: 272844; SOURCE 12 STRAIN: GE5 / ORSAY; SOURCE 13 GENE: PAB2165; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PRSFDUET(+); SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 19 ORGANISM_TAXID: 272844; SOURCE 20 STRAIN: GE5 / ORSAY; SOURCE 21 GENE: PAB2164; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PRSFDUET(+) KEYWDS REPLICATION PROTEIN A, SSDNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.LEGRAND,C.MADRU,L.SAUGUET REVDAT 1 03-MAY-23 8AAJ 0 JRNL AUTH C.MADRU,M.MARTINEZ-CARRANZA,S.LAURENT,A.C.ALBERTI, JRNL AUTH 2 M.CHEVREUIL,B.RAYNAL,A.HAOUZ,R.A.LE MEUR,M.DELARUE, JRNL AUTH 3 G.HENNEKE,D.FLAMENT,M.KRUPOVIC,P.LEGRAND,L.SAUGUET JRNL TITL DNA-BINDING MECHANISM AND EVOLUTION OF REPLICATION PROTEIN JRNL TITL 2 A. JRNL REF NAT COMMUN V. 14 2326 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37087464 JRNL DOI 10.1038/S41467-023-38048-W REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (3-FEB-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 60.8 REMARK 3 NUMBER OF REFLECTIONS : 13191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1036 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.12 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3485 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 24 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 166.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 235.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.23420 REMARK 3 B22 (A**2) : 2.57220 REMARK 3 B33 (A**2) : 13.66210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.640 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.689 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5424 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7307 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2023 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 907 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5424 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 698 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3590 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 0.63 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.66 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.64 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|58 } REMARK 3 ORIGIN FOR THE GROUP (A): 79.4419 108.643 -7.411 REMARK 3 T TENSOR REMARK 3 T11: -0.1112 T22: 0.3001 REMARK 3 T33: 0.0534 T12: -0.1332 REMARK 3 T13: 0.152 T23: -0.152 REMARK 3 L TENSOR REMARK 3 L11: 8.3155 L22: 8.3155 REMARK 3 L33: 8.3154 L12: 2.9104 REMARK 3 L13: -2.9104 L23: 1.2559 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.4887 S13: -0.5221 REMARK 3 S21: -0.4887 S22: 0.4158 S23: -0.4575 REMARK 3 S31: -0.5221 S32: -0.4575 S33: -0.3269 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|59 - A|185 } REMARK 3 ORIGIN FOR THE GROUP (A): 78.1218 74.5765 -13.1683 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.1653 REMARK 3 T33: 0.2051 T12: 0.0521 REMARK 3 T13: -0.152 T23: -0.152 REMARK 3 L TENSOR REMARK 3 L11: 6.135 L22: 8.3155 REMARK 3 L33: 8.3154 L12: 2.9104 REMARK 3 L13: 2.9104 L23: 2.9104 REMARK 3 S TENSOR REMARK 3 S11: -0.2028 S12: -0.5442 S13: -0.5442 REMARK 3 S21: -0.5442 S22: 0.3414 S23: 0.5442 REMARK 3 S31: -0.5442 S32: 0.5442 S33: -0.1387 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|186 - A|401 } REMARK 3 ORIGIN FOR THE GROUP (A): 65.7027 52.9917 -24.3591 REMARK 3 T TENSOR REMARK 3 T11: -0.304 T22: -0.304 REMARK 3 T33: -0.304 T12: 0.152 REMARK 3 T13: -0.1307 T23: -0.128 REMARK 3 L TENSOR REMARK 3 L11: 6.158 L22: 8.3155 REMARK 3 L33: 6.8857 L12: -2.1624 REMARK 3 L13: -0.1182 L23: 2.9104 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.5442 S13: 0.2005 REMARK 3 S21: 0.5442 S22: 0.2121 S23: 0.5442 REMARK 3 S31: 0.2005 S32: 0.5442 S33: -0.244 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 44.4609 50.0178 -41.576 REMARK 3 T TENSOR REMARK 3 T11: -0.304 T22: 0.1514 REMARK 3 T33: -0.263 T12: -0.152 REMARK 3 T13: -0.0131 T23: -0.049 REMARK 3 L TENSOR REMARK 3 L11: 4.4761 L22: 4.6969 REMARK 3 L33: 7.7582 L12: -0.1838 REMARK 3 L13: -1.7262 L23: -0.9052 REMARK 3 S TENSOR REMARK 3 S11: -0.2312 S12: -0.5442 S13: -0.2884 REMARK 3 S21: -0.5442 S22: 0.2227 S23: -0.5442 REMARK 3 S31: -0.2884 S32: -0.5442 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 32.3756 32.181 -26.4531 REMARK 3 T TENSOR REMARK 3 T11: 0.0496 T22: 0.304 REMARK 3 T33: 0.1189 T12: -0.152 REMARK 3 T13: 0.152 T23: -0.152 REMARK 3 L TENSOR REMARK 3 L11: 8.3155 L22: 3.4201 REMARK 3 L33: 6.6827 L12: 1.9221 REMARK 3 L13: -2.611 L23: -2.6477 REMARK 3 S TENSOR REMARK 3 S11: -0.3336 S12: -0.451 S13: 0.5442 REMARK 3 S21: -0.451 S22: 0.2048 S23: -0.5442 REMARK 3 S31: 0.5442 S32: -0.5442 S33: 0.1288 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : STARANISO 2.3.36 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13191 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 60.1 REMARK 200 DATA REDUNDANCY : 27.60 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.3 REMARK 200 DATA REDUNDANCY IN SHELL : 26.80 REMARK 200 R MERGE FOR SHELL (I) : 4.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, PHASER, PARROT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5 1.2M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.92750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 100.92750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.26300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.86900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.26300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.86900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 100.92750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.26300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.86900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.92750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.26300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 84.86900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 0 REMARK 465 ILE B 186 REMARK 465 GLU B 187 REMARK 465 GLU B 188 REMARK 465 PRO B 189 REMARK 465 MET B 190 REMARK 465 GLU B 191 REMARK 465 GLU B 192 REMARK 465 LEU B 193 REMARK 465 LEU B 194 REMARK 465 GLU B 195 REMARK 465 GLU B 196 REMARK 465 GLU B 197 REMARK 465 ILE B 198 REMARK 465 PRO B 199 REMARK 465 GLU B 200 REMARK 465 GLU B 201 REMARK 465 LYS B 202 REMARK 465 GLU B 203 REMARK 465 GLU B 204 REMARK 465 ASN B 205 REMARK 465 GLU B 206 REMARK 465 LEU B 207 REMARK 465 LEU B 208 REMARK 465 GLU B 209 REMARK 465 LYS B 210 REMARK 465 ALA B 211 REMARK 465 LYS B 212 REMARK 465 GLU B 213 REMARK 465 ASP B 214 REMARK 465 ILE B 215 REMARK 465 LEU B 216 REMARK 465 ASN B 217 REMARK 465 ILE B 218 REMARK 465 LEU B 219 REMARK 465 ARG B 220 REMARK 465 GLN B 221 REMARK 465 LYS B 222 REMARK 465 ARG B 223 REMARK 465 THR B 224 REMARK 465 ALA B 225 REMARK 465 ILE B 226 REMARK 465 SER B 227 REMARK 465 ARG B 228 REMARK 465 LYS B 229 REMARK 465 TYR B 230 REMARK 465 ILE B 231 REMARK 465 LEU B 232 REMARK 465 LYS B 233 REMARK 465 LYS B 234 REMARK 465 LEU B 235 REMARK 465 GLY B 236 REMARK 465 ASP B 237 REMARK 465 LYS B 238 REMARK 465 TYR B 239 REMARK 465 ASP B 240 REMARK 465 GLU B 241 REMARK 465 GLU B 242 REMARK 465 THR B 243 REMARK 465 ILE B 244 REMARK 465 ASP B 245 REMARK 465 ASP B 246 REMARK 465 ALA B 247 REMARK 465 ILE B 248 REMARK 465 THR B 249 REMARK 465 GLU B 250 REMARK 465 LEU B 251 REMARK 465 LEU B 252 REMARK 465 ALA B 253 REMARK 465 GLN B 254 REMARK 465 GLY B 255 REMARK 465 GLU B 256 REMARK 465 ILE B 257 REMARK 465 TYR B 258 REMARK 465 GLU B 259 REMARK 465 PRO B 260 REMARK 465 GLU B 261 REMARK 465 THR B 262 REMARK 465 GLY B 263 REMARK 465 TYR B 264 REMARK 465 TYR B 265 REMARK 465 LYS B 266 REMARK 465 LEU B 267 REMARK 465 GLY C -4 REMARK 465 THR C -3 REMARK 465 GLY C -2 REMARK 465 ASP C -1 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 465 GLU C 2 REMARK 465 VAL C 3 REMARK 465 GLN C 4 REMARK 465 VAL C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 -9.81 -58.23 REMARK 500 LEU A 55 29.32 -76.95 REMARK 500 GLU A 60 50.13 -116.85 REMARK 500 ASN A 79 80.82 -150.97 REMARK 500 ASP A 121 -108.65 52.91 REMARK 500 ASN A 165 75.24 51.92 REMARK 500 PRO A 237 35.33 -77.98 REMARK 500 GLU A 238 -26.60 -159.92 REMARK 500 PHE A 326 -28.24 -143.47 REMARK 500 TYR B 36 32.01 -98.65 REMARK 500 ARG B 79 -91.56 55.92 REMARK 500 SER C 57 -30.91 -156.54 REMARK 500 ILE C 115 77.86 -108.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 218 SG REMARK 620 2 CYS A 221 SG 105.1 REMARK 620 3 CYS A 236 SG 108.0 110.9 REMARK 620 4 HIS A 239 ND1 110.6 108.9 113.0 REMARK 620 N 1 2 3 DBREF 8AAJ A 1 358 UNP G8ZHS0 G8ZHS0_PYRAB 1 358 DBREF 8AAJ B 1 267 UNP Q9V1Z1 Q9V1Z1_PYRAB 5 271 DBREF 8AAJ C 2 117 UNP Q9V1Z0 Q9V1Z0_PYRAB 2 117 SEQADV 8AAJ SER A 2 UNP G8ZHS0 THR 2 ENGINEERED MUTATION SEQADV 8AAJ MET B 0 UNP Q9V1Z1 INITIATING METHIONINE SEQADV 8AAJ SER B 1 UNP Q9V1Z1 MET 5 ENGINEERED MUTATION SEQADV 8AAJ GLY C -4 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAJ THR C -3 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAJ GLY C -2 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAJ ASP C -1 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAJ GLY C 0 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAJ SER C 1 UNP Q9V1Z0 EXPRESSION TAG SEQRES 1 A 358 MET SER VAL LEU THR LYS ASP ARG ILE ILE GLU ILE ILE SEQRES 2 A 358 GLU ARG LYS THR GLY MET SER ARG GLU GLU ILE GLU GLU SEQRES 3 A 358 GLU ILE ARG LYS ILE MET GLU GLU ASP PRO TYR LEU SER SEQRES 4 A 358 GLU GLN GLY ALA ALA ALA LEU LEU ALA GLU ARG LEU GLY SEQRES 5 A 358 ILE ASP LEU ILE GLU LYS GLU GLU VAL SER LEU MET ARG SEQRES 6 A 358 ILE SER GLU LEU TYR PRO GLY MET ASP PRO ARG GLU VAL SEQRES 7 A 358 ASN VAL VAL GLY ARG VAL LEU LYS LYS TYR PRO PRO ARG SEQRES 8 A 358 GLU TYR THR ARG LYS ASP GLY SER VAL GLY ARG VAL ALA SEQRES 9 A 358 SER LEU ILE ILE TYR ASP ASP SER GLY ARG ALA ARG VAL SEQRES 10 A 358 VAL LEU TRP ASP ALA LYS VAL SER GLU TYR TYR ASN LYS SEQRES 11 A 358 ILE GLU VAL GLY ASP VAL ILE LYS VAL LEU ASP ALA GLN SEQRES 12 A 358 VAL LYS GLU SER LEU SER GLY LEU PRO GLU LEU HIS ILE SEQRES 13 A 358 ASN PHE ARG ALA ARG ILE ILE LEU ASN PRO ASP ASP PRO SEQRES 14 A 358 ARG VAL GLU MET ILE PRO PRO LEU GLU GLU VAL ARG VAL SEQRES 15 A 358 ALA THR TYR THR ARG LYS LYS ILE LYS ASP ILE GLU ALA SEQRES 16 A 358 GLY ASP ARG PHE VAL GLU VAL ARG GLY THR ILE ALA LYS SEQRES 17 A 358 VAL TYR ARG VAL LEU THR TYR ASP ALA CYS PRO GLU CYS SEQRES 18 A 358 LYS LYS LYS VAL ASP TYR ASP GLU GLY LEU GLY VAL TRP SEQRES 19 A 358 ILE CYS PRO GLU HIS GLY GLU VAL GLN PRO ILE LYS MET SEQRES 20 A 358 THR ILE LEU ASP PHE GLY LEU ASP ASP GLY THR GLY TYR SEQRES 21 A 358 ILE ARG VAL THR LEU PHE GLY ASP ASP ALA GLU GLU LEU SEQRES 22 A 358 LEU GLY VAL SER PRO GLU GLU ILE ALA GLU LYS ILE LYS SEQRES 23 A 358 GLU LEU GLU GLU SER GLY LEU THR THR LYS GLU ALA ALA SEQRES 24 A 358 ARG LYS LEU ALA GLU ASP GLU PHE TYR ASN ILE ILE GLY SEQRES 25 A 358 ARG GLU ILE VAL VAL ARG GLY ASN VAL ILE GLU ASP ARG SEQRES 26 A 358 PHE LEU GLY LEU ILE LEU ARG ALA SER SER TRP GLU ASP SEQRES 27 A 358 VAL ASP TYR ARG ARG GLU ILE GLU ARG ILE LYS GLU GLU SEQRES 28 A 358 LEU GLU LYS LEU GLY VAL MET SEQRES 1 B 268 MET SER LYS LYS ARG MET PRO ALA THR ARG LEU TYR ILE SEQRES 2 B 268 LYS ASP ILE LEU GLU GLY TYR PHE VAL LYS SER GLU GLY SEQRES 3 B 268 ASP PHE GLU PRO ASN TYR LEU ILE THR LYS TYR ALA ARG SEQRES 4 B 268 LYS VAL TYR ARG ALA LYS ILE VAL GLY THR VAL VAL ARG SEQRES 5 B 268 GLU PRO LEU ILE ALA GLU ASP GLU THR TYR GLY LYS PHE SEQRES 6 B 268 GLN VAL ASP ASP GLY THR GLY VAL ILE TRP VAL LEU GLY SEQRES 7 B 268 PHE ARG ASP ASP THR LYS PHE ALA LYS LEU VAL ARG LYS SEQRES 8 B 268 GLY ASP LEU VAL GLN VAL ILE GLY LYS ILE ALA GLU TRP SEQRES 9 B 268 ARG ASP ASP LYS GLN ILE LEU VAL GLU GLY VAL SER LYS SEQRES 10 B 268 VAL HIS PRO ASN MET TRP ILE LEU HIS ARG TYR GLU THR SEQRES 11 B 268 LEU LYS GLU LYS ILE GLU HIS ILE LYS LYS ALA LYS ILE SEQRES 12 B 268 ALA LEU GLU ILE TYR ASN GLN TYR GLY ILE THR ALA LYS SEQRES 13 B 268 SER LYS VAL ILE ALA LYS ASN LYS GLY ILE GLU GLU GLU SEQRES 14 B 268 LEU LEU GLU VAL ILE ASP GLU LEU TYR GLY ILE MET MET SEQRES 15 B 268 GLU GLU ARG SER ILE GLU GLU PRO MET GLU GLU LEU LEU SEQRES 16 B 268 GLU GLU GLU ILE PRO GLU GLU LYS GLU GLU ASN GLU LEU SEQRES 17 B 268 LEU GLU LYS ALA LYS GLU ASP ILE LEU ASN ILE LEU ARG SEQRES 18 B 268 GLN LYS ARG THR ALA ILE SER ARG LYS TYR ILE LEU LYS SEQRES 19 B 268 LYS LEU GLY ASP LYS TYR ASP GLU GLU THR ILE ASP ASP SEQRES 20 B 268 ALA ILE THR GLU LEU LEU ALA GLN GLY GLU ILE TYR GLU SEQRES 21 B 268 PRO GLU THR GLY TYR TYR LYS LEU SEQRES 1 C 122 GLY THR GLY ASP GLY SER GLU VAL GLN VAL ARG ARG ARG SEQRES 2 C 122 LYS PRO ALA VAL GLU ARG LYS ILE SER GLU ILE ARG GLU SEQRES 3 C 122 GLU ASP THR ARG VAL SER LEU ILE GLY ARG VAL ILE LYS SEQRES 4 C 122 VAL ASP LYS MET ASP TYR MET PHE TRP LEU ASP ASP GLY SEQRES 5 C 122 THR GLY VAL ALA ILE ILE GLU SER GLU SER ASP LEU PRO SEQRES 6 C 122 LYS VAL GLY GLN VAL VAL ARG VAL ILE GLY ARG ILE ILE SEQRES 7 C 122 ARG ASN GLU GLU GLY ILE HIS ILE TYR ALA GLU VAL ILE SEQRES 8 C 122 GLN ASP PHE SER ASP ALA ASP LEU GLU ALA LEU GLU GLU SEQRES 9 C 122 ILE ARG GLU LEU GLU ARG LYS LEU LEU PRO ARG LEU GLU SEQRES 10 C 122 GLY GLU ILE VAL TRP HET ZN A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 C 201 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 4 ZN ZN 2+ FORMUL 5 SO4 11(O4 S 2-) HELIX 1 AA1 THR A 5 GLY A 18 1 14 HELIX 2 AA2 SER A 20 ASP A 35 1 16 HELIX 3 AA3 SER A 39 GLY A 52 1 14 HELIX 4 AA4 ASP A 54 LYS A 58 5 5 HELIX 5 AA5 ASP A 74 GLU A 77 5 4 HELIX 6 AA6 ASP A 121 TYR A 128 1 8 HELIX 7 AA7 ASP A 168 GLU A 172 5 5 HELIX 8 AA8 LYS A 189 ILE A 193 5 5 HELIX 9 AA9 GLY A 267 GLY A 275 1 9 HELIX 10 AB1 SER A 277 SER A 291 1 15 HELIX 11 AB2 THR A 294 GLU A 306 1 13 HELIX 12 AB3 PHE A 307 ILE A 311 5 5 HELIX 13 AB4 ASP A 340 GLY A 356 1 17 HELIX 14 AB5 TYR B 11 GLU B 17 1 7 HELIX 15 AB6 THR B 82 VAL B 88 1 7 HELIX 16 AB7 HIS B 118 TYR B 150 1 33 HELIX 17 AB8 THR B 153 LYS B 163 1 11 HELIX 18 AB9 GLU B 166 SER B 185 1 20 HELIX 19 AC1 ASP C 93 GLY C 113 1 21 SHEET 1 AA1 5 ARG A 91 THR A 94 0 SHEET 2 AA1 5 VAL A 100 TYR A 109 -1 O VAL A 103 N ARG A 91 SHEET 3 AA1 5 ARG A 114 TRP A 120 -1 O VAL A 117 N LEU A 106 SHEET 4 AA1 5 PRO A 152 ILE A 156 1 O PRO A 152 N ARG A 116 SHEET 5 AA1 5 GLN A 143 GLU A 146 -1 N LYS A 145 O GLU A 153 SHEET 1 AA2 5 ARG A 91 THR A 94 0 SHEET 2 AA2 5 VAL A 100 TYR A 109 -1 O VAL A 103 N ARG A 91 SHEET 3 AA2 5 ASN A 79 LYS A 87 -1 N LEU A 85 O ILE A 107 SHEET 4 AA2 5 VAL A 136 LEU A 140 -1 O ILE A 137 N GLY A 82 SHEET 5 AA2 5 ARG A 161 LEU A 164 -1 O ARG A 161 N LEU A 140 SHEET 1 AA3 7 THR A 186 ARG A 187 0 SHEET 2 AA3 7 VAL A 200 ALA A 217 1 O GLU A 201 N THR A 186 SHEET 3 AA3 7 GLU A 314 ASP A 324 -1 O VAL A 317 N VAL A 202 SHEET 4 AA3 7 GLY A 328 ASP A 338 -1 O ILE A 330 N ILE A 322 SHEET 5 AA3 7 TYR A 260 PHE A 266 1 N ARG A 262 O LEU A 331 SHEET 6 AA3 7 ILE A 245 ASP A 255 -1 N PHE A 252 O VAL A 263 SHEET 7 AA3 7 VAL A 200 ALA A 217 -1 N ALA A 217 O ILE A 245 SHEET 1 AA4 3 ASP A 226 ASP A 228 0 SHEET 2 AA4 3 VAL A 233 CYS A 236 -1 O VAL A 233 N ASP A 228 SHEET 3 AA4 3 GLY A 240 GLU A 241 -1 O GLY A 240 N CYS A 236 SHEET 1 AA5 4 ALA B 7 ARG B 9 0 SHEET 2 AA5 4 ARG B 42 VAL B 49 1 O ARG B 42 N THR B 8 SHEET 3 AA5 4 TYR B 61 ASP B 67 -1 O ASP B 67 N THR B 48 SHEET 4 AA5 4 LEU B 54 ILE B 55 -1 N LEU B 54 O LYS B 63 SHEET 1 AA6 7 ALA B 7 ARG B 9 0 SHEET 2 AA6 7 ARG B 42 VAL B 49 1 O ARG B 42 N THR B 8 SHEET 3 AA6 7 LEU B 93 GLU B 102 -1 O VAL B 96 N ILE B 45 SHEET 4 AA6 7 LYS B 107 LYS B 116 -1 O GLN B 108 N ALA B 101 SHEET 5 AA6 7 VAL B 72 PHE B 78 1 N TRP B 74 O ILE B 109 SHEET 6 AA6 7 TYR B 61 ASP B 67 -1 N VAL B 66 O ILE B 73 SHEET 7 AA6 7 LEU B 54 ILE B 55 -1 N LEU B 54 O LYS B 63 SHEET 1 AA7 3 TYR B 19 VAL B 21 0 SHEET 2 AA7 3 TYR B 31 ILE B 33 -1 O TYR B 31 N VAL B 21 SHEET 3 AA7 3 LYS B 39 VAL B 40 -1 O VAL B 40 N LEU B 32 SHEET 1 AA8 7 VAL C 12 GLU C 13 0 SHEET 2 AA8 7 ARG C 25 ASP C 36 1 O ARG C 25 N VAL C 12 SHEET 3 AA8 7 VAL C 65 ASN C 75 -1 O VAL C 68 N LEU C 28 SHEET 4 AA8 7 GLY C 78 ASP C 88 -1 O HIS C 80 N ILE C 73 SHEET 5 AA8 7 VAL C 50 GLU C 54 1 N ILE C 52 O ILE C 81 SHEET 6 AA8 7 MET C 41 ASP C 45 -1 N LEU C 44 O ALA C 51 SHEET 7 AA8 7 ARG C 25 ASP C 36 -1 N ASP C 36 O MET C 41 LINK SG CYS A 218 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.24 LINK SG CYS A 236 ZN ZN A 401 1555 1555 2.33 LINK ND1 HIS A 239 ZN ZN A 401 1555 1555 2.08 CRYST1 116.526 169.738 201.855 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008582 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004954 0.00000