HEADER DNA BINDING PROTEIN 01-JUL-22 8AAS TITLE CRYSTAL STRUCTURE OF THE PYROCOCCUS ABYSSI RPA TRIMERIZATION CORE TITLE 2 BOUND TO POLY-DT20 SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION FACTOR A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RPA32 SUBUNIT OF THE HETERO-OLIGOMERIC COMPLEX INVOLVED IN COMPND 7 HOMOLOGOUS RECOMBINATION; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: INSERTION OF SER AFTER FIRST M FROM REFERENCE SEQUENCE COMPND 11 NCBI REFERENCE SEQUENCE: WP_048146526.1 TO IMPROVE EXPRESSION; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RPA14 SUBUNIT OF THE HETERO-OLIGOMERIC COMPLEX INVOLVED IN COMPND 14 HOMOLOGOUS RECOMBINATION; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'); COMPND 19 CHAIN: F; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: PAB2163; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 10 ORGANISM_TAXID: 272844; SOURCE 11 STRAIN: GE5 / ORSAY; SOURCE 12 GENE: PAB2165; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 17 ORGANISM_TAXID: 272844; SOURCE 18 STRAIN: GE5 / ORSAY; SOURCE 19 GENE: PAB2164; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 MOL_ID: 4; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 25 ORGANISM_TAXID: 32630 KEYWDS REPLICATION PROTEIN A, SSDNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MADRU,P.LEGRAND,L.SAUGUET REVDAT 2 01-MAY-24 8AAS 1 REMARK REVDAT 1 03-MAY-23 8AAS 0 JRNL AUTH C.MADRU,M.MARTINEZ-CARRANZA,S.LAURENT,A.C.ALBERTI, JRNL AUTH 2 M.CHEVREUIL,B.RAYNAL,A.HAOUZ,R.A.LE MEUR,M.DELARUE, JRNL AUTH 3 G.HENNEKE,D.FLAMENT,M.KRUPOVIC,P.LEGRAND,L.SAUGUET JRNL TITL DNA-BINDING MECHANISM AND EVOLUTION OF REPLICATION PROTEIN JRNL TITL 2 A. JRNL REF NAT COMMUN V. 14 2326 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37087464 JRNL DOI 10.1038/S41467-023-38048-W REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (3-FEB-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.5 REMARK 3 NUMBER OF REFLECTIONS : 10041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 494 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3586 REMARK 3 BIN FREE R VALUE : 0.4203 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 29 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3771 REMARK 3 NUCLEIC ACID ATOMS : 280 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 163.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 173.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68800 REMARK 3 B22 (A**2) : 1.68800 REMARK 3 B33 (A**2) : -3.37610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.590 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.634 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4135 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5620 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1503 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 658 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4135 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 538 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : 6 ; 1.000 ; HARMONIC REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2765 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.85 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.41 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* C|* B|1 - B|148 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.7869 8.5961 -12.0859 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: -0.2115 REMARK 3 T33: -0.2115 T12: 0.2289 REMARK 3 T13: 0.2076 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 1.5322 L22: 3.4984 REMARK 3 L33: 3.3786 L12: -0.5018 REMARK 3 L13: -0.4101 L23: -1.4084 REMARK 3 S TENSOR REMARK 3 S11: 0.2194 S12: -0.5789 S13: -0.5516 REMARK 3 S21: -0.5789 S22: 0.0193 S23: -0.133 REMARK 3 S31: -0.5516 S32: -0.133 S33: -0.2387 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|149 - B|187 } REMARK 3 ORIGIN FOR THE GROUP (A): -36.5029 3.7573 -37.5422 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.3437 REMARK 3 T33: -0.304 T12: 0.129 REMARK 3 T13: -0.1704 T23: 0.0771 REMARK 3 L TENSOR REMARK 3 L11: 7.6221 L22: -0.6038 REMARK 3 L33: 8.3155 L12: 1.303 REMARK 3 L13: 2.0616 L23: 2.25 REMARK 3 S TENSOR REMARK 3 S11: -0.0798 S12: -0.1827 S13: -0.058 REMARK 3 S21: -0.1827 S22: 0.1435 S23: -0.3144 REMARK 3 S31: -0.058 S32: -0.3144 S33: -0.0637 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { F|* } REMARK 3 ORIGIN FOR THE GROUP (A): -8.7971 18.7354 -26.3414 REMARK 3 T TENSOR REMARK 3 T11: 0.2712 T22: -0.2548 REMARK 3 T33: -0.1596 T12: 0.1897 REMARK 3 T13: 0.2056 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 1.9616 L22: 9.5581 REMARK 3 L33: 8.3155 L12: -0.758 REMARK 3 L13: -3.9757 L23: 1.0653 REMARK 3 S TENSOR REMARK 3 S11: -0.2478 S12: -0.2775 S13: 0.3017 REMARK 3 S21: -0.2775 S22: -0.2027 S23: 0.5138 REMARK 3 S31: 0.3017 S32: 0.5138 S33: 0.4505 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : STARANISO 2.3.77 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10041 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.7 REMARK 200 DATA REDUNDANCY : 27.20 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 21.2 REMARK 200 DATA REDUNDANCY IN SHELL : 26.80 REMARK 200 R MERGE FOR SHELL (I) : 4.18900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: WORKING MODEL OF THE FULL APO-RPA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 8K 0.1M IMIDAZOLE PH 8 0.2 REMARK 280 M CALCIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.65800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.82900 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.82900 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.65800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 64 REMARK 465 ARG A 65 REMARK 465 ILE A 66 REMARK 465 SER A 67 REMARK 465 GLU A 68 REMARK 465 LEU A 69 REMARK 465 TYR A 70 REMARK 465 PRO A 71 REMARK 465 GLY A 72 REMARK 465 MET A 73 REMARK 465 ASP A 74 REMARK 465 PRO A 75 REMARK 465 ARG A 76 REMARK 465 GLU A 77 REMARK 465 VAL A 78 REMARK 465 ASN A 79 REMARK 465 VAL A 80 REMARK 465 VAL A 81 REMARK 465 GLY A 82 REMARK 465 ARG A 83 REMARK 465 VAL A 84 REMARK 465 LEU A 85 REMARK 465 LYS A 86 REMARK 465 LYS A 87 REMARK 465 TYR A 88 REMARK 465 PRO A 89 REMARK 465 PRO A 90 REMARK 465 ARG A 91 REMARK 465 GLU A 92 REMARK 465 TYR A 93 REMARK 465 THR A 94 REMARK 465 ARG A 95 REMARK 465 LYS A 96 REMARK 465 ASP A 97 REMARK 465 GLY A 98 REMARK 465 SER A 99 REMARK 465 VAL A 100 REMARK 465 GLY A 101 REMARK 465 ARG A 102 REMARK 465 VAL A 103 REMARK 465 ALA A 104 REMARK 465 SER A 105 REMARK 465 LEU A 106 REMARK 465 ILE A 107 REMARK 465 ILE A 108 REMARK 465 TYR A 109 REMARK 465 ASP A 110 REMARK 465 ASP A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 ARG A 114 REMARK 465 ALA A 115 REMARK 465 ARG A 116 REMARK 465 VAL A 117 REMARK 465 VAL A 118 REMARK 465 LEU A 119 REMARK 465 TRP A 120 REMARK 465 ASP A 121 REMARK 465 ALA A 122 REMARK 465 LYS A 123 REMARK 465 VAL A 124 REMARK 465 SER A 125 REMARK 465 GLU A 126 REMARK 465 TYR A 127 REMARK 465 TYR A 128 REMARK 465 ASN A 129 REMARK 465 LYS A 130 REMARK 465 ILE A 131 REMARK 465 GLU A 132 REMARK 465 VAL A 133 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 VAL A 136 REMARK 465 ILE A 137 REMARK 465 LYS A 138 REMARK 465 VAL A 139 REMARK 465 LEU A 140 REMARK 465 ASP A 141 REMARK 465 ALA A 142 REMARK 465 GLN A 143 REMARK 465 VAL A 144 REMARK 465 LYS A 145 REMARK 465 GLU A 146 REMARK 465 SER A 147 REMARK 465 LEU A 148 REMARK 465 SER A 149 REMARK 465 GLY A 150 REMARK 465 LEU A 151 REMARK 465 PRO A 152 REMARK 465 GLU A 153 REMARK 465 LEU A 154 REMARK 465 HIS A 155 REMARK 465 ILE A 156 REMARK 465 ASN A 157 REMARK 465 PHE A 158 REMARK 465 ARG A 159 REMARK 465 ALA A 160 REMARK 465 ARG A 161 REMARK 465 ILE A 162 REMARK 465 ILE A 163 REMARK 465 LEU A 164 REMARK 465 ASN A 165 REMARK 465 PRO A 166 REMARK 465 ASP A 167 REMARK 465 ASP A 168 REMARK 465 PRO A 169 REMARK 465 ARG A 170 REMARK 465 VAL A 171 REMARK 465 GLU A 172 REMARK 465 MET A 173 REMARK 465 ILE A 174 REMARK 465 PRO A 175 REMARK 465 PRO A 176 REMARK 465 LEU A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 VAL A 180 REMARK 465 ARG A 181 REMARK 465 VAL A 182 REMARK 465 ALA A 183 REMARK 465 THR A 184 REMARK 465 TYR A 185 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 LYS B 2 REMARK 465 MET B 181 REMARK 465 GLU B 182 REMARK 465 GLY C -4 REMARK 465 THR C -3 REMARK 465 GLY C -2 REMARK 465 ASP C -1 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 465 GLU C 2 REMARK 465 VAL C 3 REMARK 465 GLN C 4 REMARK 465 DT F 15 REMARK 465 DT F 16 REMARK 465 DT F 17 REMARK 465 DT F 18 REMARK 465 DT F 19 REMARK 465 DT F 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT F 13 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 325 -8.88 -58.45 REMARK 500 PHE A 326 -31.13 -147.37 REMARK 500 ARG B 79 -109.70 67.16 REMARK 500 SER C 57 -41.71 -136.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 218 SG REMARK 620 2 CYS A 221 SG 116.8 REMARK 620 3 CYS A 236 SG 108.2 105.2 REMARK 620 4 HIS A 239 ND1 105.9 110.9 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 266 O REMARK 620 2 GLU C 95 OE1 95.0 REMARK 620 N 1 DBREF 8AAS A 64 358 UNP G8ZHS0 G8ZHS0_PYRAB 64 358 DBREF 8AAS B 2 182 UNP Q9V1Z1 Q9V1Z1_PYRAB 6 186 DBREF 8AAS C 2 117 UNP Q9V1Z0 Q9V1Z0_PYRAB 2 117 DBREF 8AAS F 1 20 PDB 8AAS 8AAS 1 20 SEQADV 8AAS MET B 0 UNP Q9V1Z1 INITIATING METHIONINE SEQADV 8AAS SER B 1 UNP Q9V1Z1 EXPRESSION TAG SEQADV 8AAS GLY C -4 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAS THR C -3 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAS GLY C -2 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAS ASP C -1 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAS GLY C 0 UNP Q9V1Z0 EXPRESSION TAG SEQADV 8AAS SER C 1 UNP Q9V1Z0 EXPRESSION TAG SEQRES 1 A 295 MET ARG ILE SER GLU LEU TYR PRO GLY MET ASP PRO ARG SEQRES 2 A 295 GLU VAL ASN VAL VAL GLY ARG VAL LEU LYS LYS TYR PRO SEQRES 3 A 295 PRO ARG GLU TYR THR ARG LYS ASP GLY SER VAL GLY ARG SEQRES 4 A 295 VAL ALA SER LEU ILE ILE TYR ASP ASP SER GLY ARG ALA SEQRES 5 A 295 ARG VAL VAL LEU TRP ASP ALA LYS VAL SER GLU TYR TYR SEQRES 6 A 295 ASN LYS ILE GLU VAL GLY ASP VAL ILE LYS VAL LEU ASP SEQRES 7 A 295 ALA GLN VAL LYS GLU SER LEU SER GLY LEU PRO GLU LEU SEQRES 8 A 295 HIS ILE ASN PHE ARG ALA ARG ILE ILE LEU ASN PRO ASP SEQRES 9 A 295 ASP PRO ARG VAL GLU MET ILE PRO PRO LEU GLU GLU VAL SEQRES 10 A 295 ARG VAL ALA THR TYR THR ARG LYS LYS ILE LYS ASP ILE SEQRES 11 A 295 GLU ALA GLY ASP ARG PHE VAL GLU VAL ARG GLY THR ILE SEQRES 12 A 295 ALA LYS VAL TYR ARG VAL LEU THR TYR ASP ALA CYS PRO SEQRES 13 A 295 GLU CYS LYS LYS LYS VAL ASP TYR ASP GLU GLY LEU GLY SEQRES 14 A 295 VAL TRP ILE CYS PRO GLU HIS GLY GLU VAL GLN PRO ILE SEQRES 15 A 295 LYS MET THR ILE LEU ASP PHE GLY LEU ASP ASP GLY THR SEQRES 16 A 295 GLY TYR ILE ARG VAL THR LEU PHE GLY ASP ASP ALA GLU SEQRES 17 A 295 GLU LEU LEU GLY VAL SER PRO GLU GLU ILE ALA GLU LYS SEQRES 18 A 295 ILE LYS GLU LEU GLU GLU SER GLY LEU THR THR LYS GLU SEQRES 19 A 295 ALA ALA ARG LYS LEU ALA GLU ASP GLU PHE TYR ASN ILE SEQRES 20 A 295 ILE GLY ARG GLU ILE VAL VAL ARG GLY ASN VAL ILE GLU SEQRES 21 A 295 ASP ARG PHE LEU GLY LEU ILE LEU ARG ALA SER SER TRP SEQRES 22 A 295 GLU ASP VAL ASP TYR ARG ARG GLU ILE GLU ARG ILE LYS SEQRES 23 A 295 GLU GLU LEU GLU LYS LEU GLY VAL MET SEQRES 1 B 183 MET SER LYS LYS ARG MET PRO ALA THR ARG LEU TYR ILE SEQRES 2 B 183 LYS ASP ILE LEU GLU GLY TYR PHE VAL LYS SER GLU GLY SEQRES 3 B 183 ASP PHE GLU PRO ASN TYR LEU ILE THR LYS TYR ALA ARG SEQRES 4 B 183 LYS VAL TYR ARG ALA LYS ILE VAL GLY THR VAL VAL ARG SEQRES 5 B 183 GLU PRO LEU ILE ALA GLU ASP GLU THR TYR GLY LYS PHE SEQRES 6 B 183 GLN VAL ASP ASP GLY THR GLY VAL ILE TRP VAL LEU GLY SEQRES 7 B 183 PHE ARG ASP ASP THR LYS PHE ALA LYS LEU VAL ARG LYS SEQRES 8 B 183 GLY ASP LEU VAL GLN VAL ILE GLY LYS ILE ALA GLU TRP SEQRES 9 B 183 ARG ASP ASP LYS GLN ILE LEU VAL GLU GLY VAL SER LYS SEQRES 10 B 183 VAL HIS PRO ASN MET TRP ILE LEU HIS ARG TYR GLU THR SEQRES 11 B 183 LEU LYS GLU LYS ILE GLU HIS ILE LYS LYS ALA LYS ILE SEQRES 12 B 183 ALA LEU GLU ILE TYR ASN GLN TYR GLY ILE THR ALA LYS SEQRES 13 B 183 SER LYS VAL ILE ALA LYS ASN LYS GLY ILE GLU GLU GLU SEQRES 14 B 183 LEU LEU GLU VAL ILE ASP GLU LEU TYR GLY ILE MET MET SEQRES 15 B 183 GLU SEQRES 1 C 122 GLY THR GLY ASP GLY SER GLU VAL GLN VAL ARG ARG ARG SEQRES 2 C 122 LYS PRO ALA VAL GLU ARG LYS ILE SER GLU ILE ARG GLU SEQRES 3 C 122 GLU ASP THR ARG VAL SER LEU ILE GLY ARG VAL ILE LYS SEQRES 4 C 122 VAL ASP LYS MET ASP TYR MET PHE TRP LEU ASP ASP GLY SEQRES 5 C 122 THR GLY VAL ALA ILE ILE GLU SER GLU SER ASP LEU PRO SEQRES 6 C 122 LYS VAL GLY GLN VAL VAL ARG VAL ILE GLY ARG ILE ILE SEQRES 7 C 122 ARG ASN GLU GLU GLY ILE HIS ILE TYR ALA GLU VAL ILE SEQRES 8 C 122 GLN ASP PHE SER ASP ALA ASP LEU GLU ALA LEU GLU GLU SEQRES 9 C 122 ILE ARG GLU LEU GLU ARG LYS LEU LEU PRO ARG LEU GLU SEQRES 10 C 122 GLY GLU ILE VAL TRP SEQRES 1 F 20 DT DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 2 F 20 DT DT DT DT DT DT DT HET ZN A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA B 201 1 HET CA C 201 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 5 ZN ZN 2+ FORMUL 6 CA 5(CA 2+) HELIX 1 AA1 LYS A 189 ILE A 193 5 5 HELIX 2 AA2 GLY A 267 GLY A 275 1 9 HELIX 3 AA3 SER A 277 SER A 291 1 15 HELIX 4 AA4 THR A 294 PHE A 307 1 14 HELIX 5 AA5 TYR A 308 ILE A 311 5 4 HELIX 6 AA6 ASP A 340 GLY A 356 1 17 HELIX 7 AA7 TYR B 11 GLU B 17 1 7 HELIX 8 AA8 ASP B 81 VAL B 88 1 8 HELIX 9 AA9 HIS B 118 GLY B 151 1 34 HELIX 10 AB1 THR B 153 LYS B 163 1 11 HELIX 11 AB2 GLU B 166 MET B 180 1 15 HELIX 12 AB3 LYS C 15 ILE C 19 5 5 HELIX 13 AB4 ASP C 93 GLY C 113 1 21 SHEET 1 AA1 6 VAL A 200 ALA A 217 0 SHEET 2 AA1 6 ILE A 245 ASP A 255 -1 O ILE A 245 N ALA A 217 SHEET 3 AA1 6 TYR A 260 PHE A 266 -1 O VAL A 263 N PHE A 252 SHEET 4 AA1 6 GLY A 328 ASP A 338 1 O LEU A 331 N ARG A 262 SHEET 5 AA1 6 GLU A 314 ASP A 324 -1 N ILE A 322 O ILE A 330 SHEET 6 AA1 6 VAL A 200 ALA A 217 -1 N VAL A 202 O VAL A 317 SHEET 1 AA2 3 ASP A 226 ASP A 228 0 SHEET 2 AA2 3 VAL A 233 CYS A 236 -1 O ILE A 235 N ASP A 226 SHEET 3 AA2 3 GLY A 240 GLU A 241 -1 O GLY A 240 N CYS A 236 SHEET 1 AA3 4 ALA B 7 ARG B 9 0 SHEET 2 AA3 4 ARG B 42 VAL B 49 1 O ARG B 42 N THR B 8 SHEET 3 AA3 4 TYR B 61 ASP B 67 -1 O ASP B 67 N THR B 48 SHEET 4 AA3 4 LEU B 54 ILE B 55 -1 N LEU B 54 O LYS B 63 SHEET 1 AA4 7 ALA B 7 ARG B 9 0 SHEET 2 AA4 7 ARG B 42 VAL B 49 1 O ARG B 42 N THR B 8 SHEET 3 AA4 7 LEU B 93 TRP B 103 -1 O VAL B 94 N GLY B 47 SHEET 4 AA4 7 ASP B 106 LYS B 116 -1 O LEU B 110 N LYS B 99 SHEET 5 AA4 7 VAL B 72 PHE B 78 1 N LEU B 76 O ILE B 109 SHEET 6 AA4 7 TYR B 61 ASP B 67 -1 N GLY B 62 O GLY B 77 SHEET 7 AA4 7 LEU B 54 ILE B 55 -1 N LEU B 54 O LYS B 63 SHEET 1 AA5 3 TYR B 19 VAL B 21 0 SHEET 2 AA5 3 TYR B 31 ILE B 33 -1 O TYR B 31 N VAL B 21 SHEET 3 AA5 3 LYS B 39 VAL B 40 -1 O VAL B 40 N LEU B 32 SHEET 1 AA6 7 VAL C 12 GLU C 13 0 SHEET 2 AA6 7 ARG C 25 ASP C 36 1 O ARG C 25 N VAL C 12 SHEET 3 AA6 7 VAL C 65 ASN C 75 -1 O VAL C 68 N LEU C 28 SHEET 4 AA6 7 GLY C 78 ASP C 88 -1 O TYR C 82 N ARG C 71 SHEET 5 AA6 7 VAL C 50 GLU C 54 1 N GLU C 54 O ILE C 81 SHEET 6 AA6 7 MET C 41 ASP C 45 -1 N PHE C 42 O ILE C 53 SHEET 7 AA6 7 ARG C 25 ASP C 36 -1 N ASP C 36 O MET C 41 LINK OD1 ASP A 197 CA CA A 404 1555 1555 2.89 LINK SG CYS A 218 ZN ZN A 401 1555 1555 2.26 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 236 ZN ZN A 401 1555 1555 2.23 LINK ND1 HIS A 239 ZN ZN A 401 1555 1555 2.06 LINK O PHE A 266 CA CA A 403 1555 1555 3.06 LINK CA CA A 403 OE1 GLU C 95 4455 1555 3.05 CRYST1 75.234 75.234 215.487 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013292 0.007674 0.000000 0.00000 SCALE2 0.000000 0.015348 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004641 0.00000