HEADER OXIDOREDUCTASE 04-JUL-22 8AB2 TITLE CRYSTAL STRUCTURE OF THE LACTATE DEHYDROGENASE OF CYANOBACTERIUM TITLE 2 APONINUM IN ITS APO FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-LDH; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: NUMBERING IN COORDINATES FILES START AT 3 FOR THE COMPND 9 FIRST RESIDUE (TO MATCH CANONICAL NUMBERING). TWO LAST RESIDUES AND COMPND 10 HISTAG NOT DEFINED IN ELECTRONIC DENSITY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYANOBACTERIUM APONINUM; SOURCE 3 ORGANISM_TAXID: 379064; SOURCE 4 STRAIN: PCC 10605; SOURCE 5 GENE: LDH, CYAN10605_1816; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALLOSTERY, LACTATE DEHYDROGENASE, CRYSTALLOPHORE / XO4, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.Y.ROBIN,E.GIRARD,D.MADERN REVDAT 2 07-FEB-24 8AB2 1 JRNL REVDAT 1 03-AUG-22 8AB2 0 JRNL AUTH A.Y.ROBIN,C.BROCHIER-ARMANET,Q.BERTRAND,C.BARETTE,E.GIRARD, JRNL AUTH 2 D.MADERN JRNL TITL DECIPHERING EVOLUTIONARY TRAJECTORIES OF LACTATE JRNL TITL 2 DEHYDROGENASES PROVIDES NEW INSIGHTS INTO ALLOSTERY. JRNL REF MOL.BIOL.EVOL. V. 40 2023 JRNL REFN ESSN 1537-1719 JRNL PMID 37797308 JRNL DOI 10.1093/MOLBEV/MSAD223 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 31594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9600 - 4.6700 1.00 2937 154 0.1479 0.1566 REMARK 3 2 4.6700 - 3.7100 1.00 2804 148 0.1410 0.1945 REMARK 3 3 3.7100 - 3.2400 1.00 2764 145 0.1871 0.2352 REMARK 3 4 3.2400 - 2.9400 1.00 2736 145 0.2087 0.2506 REMARK 3 5 2.9400 - 2.7300 1.00 2739 144 0.2282 0.2627 REMARK 3 6 2.7300 - 2.5700 1.00 2731 144 0.2131 0.2703 REMARK 3 7 2.5700 - 2.4400 0.99 2723 142 0.2097 0.2661 REMARK 3 8 2.4400 - 2.3400 0.99 2690 142 0.2194 0.2820 REMARK 3 9 2.3400 - 2.2500 0.98 2656 141 0.2404 0.2879 REMARK 3 10 2.2500 - 2.1700 0.99 2690 141 0.2394 0.3094 REMARK 3 11 2.1700 - 2.1000 0.94 2544 134 0.2836 0.3687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.262 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.812 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2593 REMARK 3 ANGLE : 0.452 3526 REMARK 3 CHIRALITY : 0.044 422 REMARK 3 PLANARITY : 0.004 451 REMARK 3 DIHEDRAL : 11.821 955 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.5610 -9.6752 63.6601 REMARK 3 T TENSOR REMARK 3 T11: 0.3259 T22: 0.3629 REMARK 3 T33: 0.3519 T12: 0.0803 REMARK 3 T13: -0.0188 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 0.0564 L22: 0.1218 REMARK 3 L33: 0.0515 L12: 0.1798 REMARK 3 L13: 0.0471 L23: -0.1177 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: 0.0353 S13: -0.0927 REMARK 3 S21: 0.0007 S22: 0.0660 S23: -0.1326 REMARK 3 S31: 0.2131 S32: 0.0371 S33: 0.0083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.6226 5.6833 44.4632 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.3976 REMARK 3 T33: 0.3119 T12: -0.0093 REMARK 3 T13: 0.0025 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.1528 L22: 0.0794 REMARK 3 L33: 0.4285 L12: -0.2406 REMARK 3 L13: 0.0090 L23: 0.0760 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.0814 S13: 0.0441 REMARK 3 S21: 0.0564 S22: 0.0712 S23: 0.0299 REMARK 3 S31: -0.0604 S32: 0.3267 S33: 0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.7689 7.7113 25.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.3203 T22: 0.3131 REMARK 3 T33: 0.2937 T12: -0.0122 REMARK 3 T13: 0.0222 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: -0.0471 L22: 0.2807 REMARK 3 L33: 0.4703 L12: 0.0385 REMARK 3 L13: 0.3335 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.0452 S13: 0.0122 REMARK 3 S21: -0.1394 S22: 0.0784 S23: -0.0172 REMARK 3 S31: -0.0791 S32: 0.2061 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292122233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 19.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21 % PEG MME 550, 0.1 M NACL, 0.1 M REMARK 280 BICINE PH 9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 51.89850 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.91200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.45600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.89850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.36800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 148.36800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.89850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.45600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 51.89850 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.91200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.89850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 98.91200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.89850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 148.36800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 49.45600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.89850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 49.45600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 148.36800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.89850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.89850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 98.91200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 51.89850 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -51.89850 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 98.91200 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 103.79700 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 51.89850 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 51.89850 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 98.91200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 332 REMARK 465 TYR A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 SER A 19 OG REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ARG A 185 NE CZ NH1 NH2 REMARK 470 LYS A 315 CD CE NZ REMARK 470 ILE A 331 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 45 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 50.51 -108.30 REMARK 500 ASN A 86 -88.90 -116.20 REMARK 500 ASN A 216 -102.79 -118.63 REMARK 500 SER A 251 -50.00 -134.78 REMARK 500 SER A 297 -155.56 -148.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 7MT A 401 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 OE1 REMARK 620 2 7MT A 401 N23 96.3 REMARK 620 3 7MT A 401 N02 133.4 88.0 REMARK 620 4 7MT A 401 N06 81.1 125.1 59.6 REMARK 620 5 7MT A 401 N09 78.1 67.7 60.7 58.0 REMARK 620 6 7MT A 401 O26 125.2 66.9 99.1 151.9 130.5 REMARK 620 7 7MT A 401 N17 133.3 129.0 67.6 80.9 125.0 73.6 REMARK 620 8 7MT A 401 O27 89.3 148.2 110.6 86.7 143.8 84.4 47.0 REMARK 620 9 GLU A 61 OE2 53.4 75.7 163.4 133.3 114.2 71.8 120.7 82.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 404 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD1 REMARK 620 2 ASP A 181 OD2 42.6 REMARK 620 3 HOH A 636 O 69.8 73.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 402 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 314 OE1 REMARK 620 2 GLU A 314 OE2 48.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 403 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 668 O REMARK 620 2 HOH A 685 O 152.3 REMARK 620 3 HOH A 688 O 94.1 68.7 REMARK 620 N 1 2 DBREF 8AB2 A 3 333 UNP K9Z684 K9Z684_CYAAP 1 331 SEQADV 8AB2 HIS A 334 UNP K9Z684 EXPRESSION TAG SEQADV 8AB2 HIS A 335 UNP K9Z684 EXPRESSION TAG SEQADV 8AB2 HIS A 336 UNP K9Z684 EXPRESSION TAG SEQADV 8AB2 HIS A 337 UNP K9Z684 EXPRESSION TAG SEQADV 8AB2 HIS A 338 UNP K9Z684 EXPRESSION TAG SEQADV 8AB2 HIS A 339 UNP K9Z684 EXPRESSION TAG SEQRES 1 A 337 MET PHE GLU LYS ILE LEU LEU SER ASN PRO SER ALA GLU SEQRES 2 A 337 ASN PRO SER SER LEU ARG PRO ARG LYS GLY ILE ILE ILE SEQRES 3 A 337 GLY LEU GLY GLN VAL GLY LEU ALA CYS ALA TYR SER MET SEQRES 4 A 337 LEU ILE GLN ASP CYS PHE ASP GLU LEU VAL LEU GLN ASP SEQRES 5 A 337 ILE ALA SER ASP LYS LEU GLU GLY GLU VAL MET ASP PHE SEQRES 6 A 337 SER HIS GLY MET PRO PHE ILE PRO PRO THR ASP ILE LYS SEQRES 7 A 337 ALA GLY THR ILE ALA ASN GLU GLY ARG ASN ALA ASP ILE SEQRES 8 A 337 VAL ILE ILE THR ALA GLY VAL ALA GLN LYS GLU GLY GLU SEQRES 9 A 337 SER ARG LEU SER LEU LEU GLU ARG ASN ILE ALA ILE TYR SEQRES 10 A 337 LYS LYS ILE LEU ALA ASP VAL VAL LYS TYR CYS PRO GLU SEQRES 11 A 337 ALA ILE ILE LEU VAL VAL THR ASN PRO VAL ASP ILE MET SEQRES 12 A 337 THR TYR ALA THR LEU LYS ILE THR GLY PHE PRO SER SER SEQRES 13 A 337 ARG ILE ILE GLY SER GLY THR VAL LEU ASP THR ALA ARG SEQRES 14 A 337 PHE ARG THR LEU LEU ALA LYS GLU MET ASP ILE ASP PRO SEQRES 15 A 337 ARG SER VAL HIS ALA TYR ILE ILE GLY GLU HIS GLY ASP SEQRES 16 A 337 SER GLU VAL PRO VAL TRP SER THR ALA ASN VAL GLY GLY SEQRES 17 A 337 MET LYS LEU VAL PRO ASN THR TRP ALA ASP LEU PRO GLU SEQRES 18 A 337 ASP GLU LYS ALA THR LEU SER GLY ILE PHE GLN LYS VAL SEQRES 19 A 337 GLN ASN ALA ALA TYR ASP ILE ILE LYS LEU LYS GLY TYR SEQRES 20 A 337 THR SER TYR ALA ILE GLY LEU ALA THR THR ASP ILE VAL SEQRES 21 A 337 LYS ALA ILE LEU ASN SER GLN GLU ARG ILE LEU THR VAL SEQRES 22 A 337 SER GLY LEU MET THR GLY MET TYR GLY ILE GLU ASP VAL SEQRES 23 A 337 CYS LEU SER ILE PRO ARG VAL VAL SER GLU ARG GLY ILE SEQRES 24 A 337 ILE LYS THR VAL ASN LEU THR LEU SER GLU ASP GLU GLU SEQRES 25 A 337 LYS LEU LEU GLN GLN SER ALA LYS MET LEU LYS GLU VAL SEQRES 26 A 337 PHE ASP LYS ILE ASN TYR HIS HIS HIS HIS HIS HIS HET 7MT A 401 30 HET TB A 402 1 HET TB A 403 1 HET TB A 404 1 HET EDO A 405 4 HETNAM 7MT TB-XO4 HETNAM TB TERBIUM(III) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 7MT C20 H23 N5 O4 TB 5+ FORMUL 3 TB 3(TB 3+) FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *189(H2 O) HELIX 1 AA1 GLY A 31 GLN A 44 1 14 HELIX 2 AA2 SER A 57 MET A 71 1 15 HELIX 3 AA3 PRO A 72 ILE A 74 5 3 HELIX 4 AA4 SER A 107 CYS A 130 1 24 HELIX 5 AA5 PRO A 141 GLY A 154 1 14 HELIX 6 AA6 PRO A 156 SER A 158 5 3 HELIX 7 AA7 THR A 165 ASP A 181 1 17 HELIX 8 AA8 ASP A 183 ARG A 185 5 3 HELIX 9 AA9 TRP A 203 THR A 205 5 3 HELIX 10 AB1 THR A 217 LEU A 221 5 5 HELIX 11 AB2 PRO A 222 LYS A 247 1 26 HELIX 12 AB3 SER A 251 ASN A 267 1 17 HELIX 13 AB4 MET A 282 GLY A 284 5 3 HELIX 14 AB5 SER A 310 ILE A 331 1 22 SHEET 1 AA1 6 ASP A 78 ALA A 81 0 SHEET 2 AA1 6 GLU A 49 GLN A 53 1 N LEU A 52 O LYS A 80 SHEET 3 AA1 6 LYS A 24 ILE A 28 1 N ILE A 27 O GLN A 53 SHEET 4 AA1 6 ILE A 93 ILE A 96 1 O ILE A 95 N ILE A 28 SHEET 5 AA1 6 ILE A 134 VAL A 137 1 O LEU A 136 N VAL A 94 SHEET 6 AA1 6 ILE A 160 GLY A 162 1 O ILE A 161 N VAL A 137 SHEET 1 AA2 3 VAL A 187 HIS A 188 0 SHEET 2 AA2 3 ASN A 207 VAL A 208 -1 O ASN A 207 N HIS A 188 SHEET 3 AA2 3 MET A 211 LYS A 212 -1 O MET A 211 N VAL A 208 SHEET 1 AA3 2 ILE A 191 ILE A 192 0 SHEET 2 AA3 2 VAL A 200 PRO A 201 -1 O VAL A 200 N ILE A 192 SHEET 1 AA4 3 ARG A 271 LEU A 273 0 SHEET 2 AA4 3 ARG A 294 SER A 297 -1 O ARG A 294 N LEU A 273 SHEET 3 AA4 3 GLY A 300 THR A 304 -1 O ILE A 302 N VAL A 295 SHEET 1 AA5 2 SER A 276 THR A 280 0 SHEET 2 AA5 2 GLU A 286 SER A 291 -1 O VAL A 288 N MET A 279 LINK OE1 GLU A 61 TB 7MT A 401 1555 1555 2.52 LINK OE2 GLU A 61 TB 7MT A 401 1555 1555 2.35 LINK OD1 ASP A 181 TB TB A 404 1555 1555 2.88 LINK OD2 ASP A 181 TB TB A 404 1555 1555 3.13 LINK OE1 GLU A 314 TB TB A 402 1555 1555 2.82 LINK OE2 GLU A 314 TB TB A 402 1555 1555 2.47 LINK TB TB A 403 O HOH A 668 1555 1555 3.45 LINK TB TB A 403 O HOH A 685 1555 16555 3.19 LINK TB TB A 403 O HOH A 688 1555 1555 2.57 LINK TB TB A 404 O HOH A 636 1555 1555 3.22 CISPEP 1 ASN A 140 PRO A 141 0 -5.06 CRYST1 103.797 103.797 197.824 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009634 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005055 0.00000