HEADER LYASE 04-JUL-22 8ABU TITLE CRYSTAL STRUCTURE OF NALDPA MUTANT H97Q IN COMPLEX WITH ERYTHRO-DGPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNOAL-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444; SOURCE 3 ORGANISM_TAXID: 279238; SOURCE 4 STRAIN: ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC SOURCE 5 16084 / F199; SOURCE 6 GENE: SARO_2805; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGNIN, LYASE, DEHYDRATASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,E.KUATSJAH,G.T.BECKHAM,J.E.MCGEEHAN REVDAT 2 07-FEB-24 8ABU 1 REMARK REVDAT 1 01-FEB-23 8ABU 0 JRNL AUTH E.KUATSJAH,M.ZAHN,X.CHEN,R.KATO,D.J.HINCHEN,M.O.KONEV, JRNL AUTH 2 R.KATAHIRA,C.ORR,A.WAGNER,Y.ZOU,S.J.HAUGEN,K.J.RAMIREZ, JRNL AUTH 3 J.K.MICHENER,A.R.PICKFORD,N.KAMIMURA,E.MASAI,K.N.HOUK, JRNL AUTH 4 J.E.MCGEEHAN,G.T.BECKHAM JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF A JRNL TITL 2 SPHINGOMONAD DIARYLPROPANE LYASE FOR COFACTORLESS JRNL TITL 3 DEFORMYLATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 46120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36652470 JRNL DOI 10.1073/PNAS.2212246120 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.1 REMARK 3 NUMBER OF REFLECTIONS : 69923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.698 REMARK 3 FREE R VALUE TEST SET COUNT : 3285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 647 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19700 REMARK 3 B22 (A**2) : -0.03700 REMARK 3 B33 (A**2) : -0.20700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.036 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5901 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5437 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8009 ; 1.701 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12487 ; 1.461 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 7.385 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 342 ;32.549 ;21.959 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 943 ;14.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;15.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6802 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1474 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1193 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 75 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2830 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 628 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.045 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2816 ; 2.175 ; 2.647 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2815 ; 2.175 ; 2.646 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3510 ; 3.360 ; 3.948 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3511 ; 3.360 ; 3.950 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3085 ; 2.509 ; 2.902 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3086 ; 2.509 ; 2.904 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4499 ; 3.918 ; 4.258 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4500 ; 3.917 ; 4.260 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 241 NULL REMARK 3 2 B 8 B 241 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 3 A 8 A 242 NULL REMARK 3 4 C 8 C 242 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 5 B 7 B 241 NULL REMARK 3 6 C 7 C 241 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9059 1.0767 24.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.0319 REMARK 3 T33: 0.0267 T12: -0.0048 REMARK 3 T13: -0.0150 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.6458 L22: 0.0427 REMARK 3 L33: 0.0048 L12: 0.1124 REMARK 3 L13: 0.0134 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.1074 S13: 0.0660 REMARK 3 S21: 0.0241 S22: 0.0101 S23: -0.0058 REMARK 3 S31: -0.0119 S32: 0.0060 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1499 -3.0182 24.3983 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0294 REMARK 3 T33: 0.0544 T12: 0.0091 REMARK 3 T13: 0.0074 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.2348 L22: 0.1850 REMARK 3 L33: 0.0072 L12: -0.1655 REMARK 3 L13: 0.0082 L23: -0.0271 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0472 S13: 0.0049 REMARK 3 S21: 0.0059 S22: -0.0020 S23: 0.0544 REMARK 3 S31: -0.0042 S32: -0.0090 S33: -0.0165 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 242 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6769 -22.1993 25.0352 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0189 REMARK 3 T33: 0.0389 T12: 0.0097 REMARK 3 T13: -0.0136 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.2773 L22: 0.2587 REMARK 3 L33: 0.0056 L12: -0.0631 REMARK 3 L13: 0.0094 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: 0.0378 S13: -0.0942 REMARK 3 S21: -0.0273 S22: -0.0096 S23: 0.0093 REMARK 3 S31: 0.0098 S32: 0.0074 S33: -0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8ABU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292120750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.661 REMARK 200 RESOLUTION RANGE LOW (A) : 56.234 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7XXX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 500 MME, 10% PEG 20000, 0.03 M REMARK 280 MGCL2, 0.03 M CACL2, 0.1 M IMIDAZOLE/MES BUFFER PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.69200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.00100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.69200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.00100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 ALA A 182 REMARK 465 HIS A 183 REMARK 465 LEU A 184 REMARK 465 PRO A 243 REMARK 465 LEU A 244 REMARK 465 GLU A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 243 REMARK 465 LEU B 244 REMARK 465 GLU B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 VAL C 4 REMARK 465 ASN C 5 REMARK 465 ALA C 6 REMARK 465 THR C 205 REMARK 465 GLU C 206 REMARK 465 VAL C 207 REMARK 465 PRO C 243 REMARK 465 LEU C 244 REMARK 465 GLU C 245 REMARK 465 HIS C 246 REMARK 465 HIS C 247 REMARK 465 HIS C 248 REMARK 465 HIS C 249 REMARK 465 HIS C 250 REMARK 465 HIS C 251 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 126 H ASP A 128 1.23 REMARK 500 OE2 GLU B 63 HE ARG B 200 1.24 REMARK 500 HD1 HIS C 126 H ASP C 128 1.26 REMARK 500 HD1 HIS B 126 H ASP B 128 1.29 REMARK 500 HD1 HIS B 223 H LEU B 226 1.33 REMARK 500 HD1 HIS A 223 H LEU A 226 1.35 REMARK 500 OE1 GLN C 97 HH TYR C 147 1.51 REMARK 500 HZ2 LYS A 153 O HOH A 405 1.55 REMARK 500 OE1 GLN B 97 HH TYR B 147 1.55 REMARK 500 OE1 GLN A 97 HH TYR A 147 1.57 REMARK 500 HZ2 LYS C 179 O HOH C 308 1.57 REMARK 500 HD1 HIS A 213 O HOH A 410 1.58 REMARK 500 OE2 GLU A 9 HH12 ARG C 11 1.59 REMARK 500 HE22 GLN C 111 O HOH C 307 1.60 REMARK 500 O HOH B 466 O HOH B 494 1.88 REMARK 500 OD2 ASP B 132 O HOH B 301 1.90 REMARK 500 O HOH A 431 O HOH C 318 1.92 REMARK 500 O HOH B 490 O HOH B 505 1.99 REMARK 500 OD1 ASP A 172 O HOH A 401 2.01 REMARK 500 NH1 ARG B 208 O HOH B 302 2.05 REMARK 500 OE2 GLU A 174 O HOH A 402 2.07 REMARK 500 O HOH C 487 O HOH C 497 2.10 REMARK 500 OE2 GLU B 63 NE ARG B 200 2.10 REMARK 500 OD1 ASP B 172 OE1 GLU B 174 2.12 REMARK 500 OD1 ASP C 172 OE1 GLU C 174 2.13 REMARK 500 O HOH C 419 O HOH C 441 2.14 REMARK 500 O HOH B 516 O HOH B 537 2.17 REMARK 500 O PRO B 108 O HOH B 303 2.17 REMARK 500 OD1 ASP C 199 O HOH C 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 174 CD GLU B 174 OE2 0.073 REMARK 500 GLU C 174 CD GLU C 174 OE1 0.070 REMARK 500 GLU C 174 CD GLU C 174 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 THR A 180 CA - CB - OG1 ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG B 29 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 77 -73.26 -85.28 REMARK 500 LEU A 95 64.34 -150.59 REMARK 500 TRP A 211 128.74 -39.37 REMARK 500 ALA A 227 -137.48 56.14 REMARK 500 TRP B 77 -71.44 -86.45 REMARK 500 HIS B 91 128.43 -38.91 REMARK 500 TRP B 211 128.85 -38.02 REMARK 500 ALA B 227 -136.64 52.11 REMARK 500 SER C 8 -54.31 -157.34 REMARK 500 TRP C 77 -72.86 -86.14 REMARK 500 HIS C 91 128.07 -39.12 REMARK 500 ALA C 227 -137.05 55.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 8ABU A 1 243 UNP Q2G4I2 Q2G4I2_NOVAD 1 243 DBREF 8ABU B 1 243 UNP Q2G4I2 Q2G4I2_NOVAD 1 243 DBREF 8ABU C 1 243 UNP Q2G4I2 Q2G4I2_NOVAD 1 243 SEQADV 8ABU GLN A 97 UNP Q2G4I2 HIS 97 ENGINEERED MUTATION SEQADV 8ABU LEU A 244 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU GLU A 245 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS A 246 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS A 247 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS A 248 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS A 249 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS A 250 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS A 251 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU GLN B 97 UNP Q2G4I2 HIS 97 ENGINEERED MUTATION SEQADV 8ABU LEU B 244 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU GLU B 245 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS B 246 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS B 247 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS B 248 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS B 249 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS B 250 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS B 251 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU GLN C 97 UNP Q2G4I2 HIS 97 ENGINEERED MUTATION SEQADV 8ABU LEU C 244 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU GLU C 245 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS C 246 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS C 247 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS C 248 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS C 249 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS C 250 UNP Q2G4I2 EXPRESSION TAG SEQADV 8ABU HIS C 251 UNP Q2G4I2 EXPRESSION TAG SEQRES 1 A 251 MET THR ASP VAL ASN ALA SER SER GLU SER ARG LEU ALA SEQRES 2 A 251 ALA LEU GLU ALA ARG VAL THR GLU LEU GLU ASP LEU ASN SEQRES 3 A 251 ALA ILE ARG ARG LEU GLN TRP ALA TYR GLY TYR TYR ILE SEQRES 4 A 251 ASP TYR ASN ARG PRO GLU GLU VAL ALA GLY LEU PHE ALA SEQRES 5 A 251 LYS ASP GLY ALA VAL VAL PHE LEU SER GLY GLU TYR VAL SEQRES 6 A 251 GLY TYR GLU GLY VAL MET ARG LEU TYR GLY THR TRP PHE SEQRES 7 A 251 GLN ASN LEU PHE THR GLY GLY ARG ARG GLY PRO VAL HIS SEQRES 8 A 251 GLY LEU LEU LEU ASP GLN PHE GLN LEU GLN ASP VAL ILE SEQRES 9 A 251 THR ILE ALA PRO ASP GLY GLN THR ALA LYS GLY ARG PHE SEQRES 10 A 251 ARG GLY ILE LEU ALA GLY GLY TRP HIS ASP ASP ILE VAL SEQRES 11 A 251 LYS ASP LYS PRO GLU GLY MET PRO GLN GLN PHE TRP GLU SEQRES 12 A 251 SER GLY ILE TYR GLU ASN ASP TYR VAL LYS GLU ASP GLY SEQRES 13 A 251 VAL TRP LYS ILE LYS ARG LEU ASP TYR MET MET GLN TRP SEQRES 14 A 251 GLN ALA ASP TYR GLU THR GLY TRP SER LYS THR ILE ALA SEQRES 15 A 251 HIS LEU GLN PRO ALA ALA VAL CYS PHE PRO GLU ASN PRO SEQRES 16 A 251 ILE GLY PRO ASP ARG LEU LEU PRO GLU THR GLU VAL ARG SEQRES 17 A 251 GLN THR TRP PRO HIS ARG ALA GLU VAL PRO MET SER PHE SEQRES 18 A 251 ALA HIS PRO VAL LEU ALA LYS ALA PHE ALA VAL GLY GLU SEQRES 19 A 251 PHE THR LYS LEU GLN LYS LYS TRP PRO LEU GLU HIS HIS SEQRES 20 A 251 HIS HIS HIS HIS SEQRES 1 B 251 MET THR ASP VAL ASN ALA SER SER GLU SER ARG LEU ALA SEQRES 2 B 251 ALA LEU GLU ALA ARG VAL THR GLU LEU GLU ASP LEU ASN SEQRES 3 B 251 ALA ILE ARG ARG LEU GLN TRP ALA TYR GLY TYR TYR ILE SEQRES 4 B 251 ASP TYR ASN ARG PRO GLU GLU VAL ALA GLY LEU PHE ALA SEQRES 5 B 251 LYS ASP GLY ALA VAL VAL PHE LEU SER GLY GLU TYR VAL SEQRES 6 B 251 GLY TYR GLU GLY VAL MET ARG LEU TYR GLY THR TRP PHE SEQRES 7 B 251 GLN ASN LEU PHE THR GLY GLY ARG ARG GLY PRO VAL HIS SEQRES 8 B 251 GLY LEU LEU LEU ASP GLN PHE GLN LEU GLN ASP VAL ILE SEQRES 9 B 251 THR ILE ALA PRO ASP GLY GLN THR ALA LYS GLY ARG PHE SEQRES 10 B 251 ARG GLY ILE LEU ALA GLY GLY TRP HIS ASP ASP ILE VAL SEQRES 11 B 251 LYS ASP LYS PRO GLU GLY MET PRO GLN GLN PHE TRP GLU SEQRES 12 B 251 SER GLY ILE TYR GLU ASN ASP TYR VAL LYS GLU ASP GLY SEQRES 13 B 251 VAL TRP LYS ILE LYS ARG LEU ASP TYR MET MET GLN TRP SEQRES 14 B 251 GLN ALA ASP TYR GLU THR GLY TRP SER LYS THR ILE ALA SEQRES 15 B 251 HIS LEU GLN PRO ALA ALA VAL CYS PHE PRO GLU ASN PRO SEQRES 16 B 251 ILE GLY PRO ASP ARG LEU LEU PRO GLU THR GLU VAL ARG SEQRES 17 B 251 GLN THR TRP PRO HIS ARG ALA GLU VAL PRO MET SER PHE SEQRES 18 B 251 ALA HIS PRO VAL LEU ALA LYS ALA PHE ALA VAL GLY GLU SEQRES 19 B 251 PHE THR LYS LEU GLN LYS LYS TRP PRO LEU GLU HIS HIS SEQRES 20 B 251 HIS HIS HIS HIS SEQRES 1 C 251 MET THR ASP VAL ASN ALA SER SER GLU SER ARG LEU ALA SEQRES 2 C 251 ALA LEU GLU ALA ARG VAL THR GLU LEU GLU ASP LEU ASN SEQRES 3 C 251 ALA ILE ARG ARG LEU GLN TRP ALA TYR GLY TYR TYR ILE SEQRES 4 C 251 ASP TYR ASN ARG PRO GLU GLU VAL ALA GLY LEU PHE ALA SEQRES 5 C 251 LYS ASP GLY ALA VAL VAL PHE LEU SER GLY GLU TYR VAL SEQRES 6 C 251 GLY TYR GLU GLY VAL MET ARG LEU TYR GLY THR TRP PHE SEQRES 7 C 251 GLN ASN LEU PHE THR GLY GLY ARG ARG GLY PRO VAL HIS SEQRES 8 C 251 GLY LEU LEU LEU ASP GLN PHE GLN LEU GLN ASP VAL ILE SEQRES 9 C 251 THR ILE ALA PRO ASP GLY GLN THR ALA LYS GLY ARG PHE SEQRES 10 C 251 ARG GLY ILE LEU ALA GLY GLY TRP HIS ASP ASP ILE VAL SEQRES 11 C 251 LYS ASP LYS PRO GLU GLY MET PRO GLN GLN PHE TRP GLU SEQRES 12 C 251 SER GLY ILE TYR GLU ASN ASP TYR VAL LYS GLU ASP GLY SEQRES 13 C 251 VAL TRP LYS ILE LYS ARG LEU ASP TYR MET MET GLN TRP SEQRES 14 C 251 GLN ALA ASP TYR GLU THR GLY TRP SER LYS THR ILE ALA SEQRES 15 C 251 HIS LEU GLN PRO ALA ALA VAL CYS PHE PRO GLU ASN PRO SEQRES 16 C 251 ILE GLY PRO ASP ARG LEU LEU PRO GLU THR GLU VAL ARG SEQRES 17 C 251 GLN THR TRP PRO HIS ARG ALA GLU VAL PRO MET SER PHE SEQRES 18 C 251 ALA HIS PRO VAL LEU ALA LYS ALA PHE ALA VAL GLY GLU SEQRES 19 C 251 PHE THR LYS LEU GLN LYS LYS TRP PRO LEU GLU HIS HIS SEQRES 20 C 251 HIS HIS HIS HIS HET LJU A 301 43 HETNAM LJU (1S,2R)-1,2-BIS(3-METHOXY-4-OXIDANYL-PHENYL)PROPANE-1, HETNAM 2 LJU 3-DIOL FORMUL 4 LJU C17 H20 O6 FORMUL 5 HOH *647(H2 O) HELIX 1 AA1 SER A 8 TYR A 41 1 34 HELIX 2 AA2 ARG A 43 GLY A 49 1 7 HELIX 3 AA3 GLY A 66 GLY A 75 1 10 HELIX 4 AA4 TRP A 77 GLY A 84 1 8 HELIX 5 AA5 ILE A 129 LYS A 133 5 5 HELIX 6 AA6 GLY A 176 THR A 180 5 5 HELIX 7 AA7 PRO A 203 VAL A 207 5 5 HELIX 8 AA8 LEU A 226 PHE A 230 5 5 HELIX 9 AA9 ALA A 231 LYS A 237 1 7 HELIX 10 AB1 SER B 7 TYR B 41 1 35 HELIX 11 AB2 ARG B 43 GLY B 49 1 7 HELIX 12 AB3 GLY B 66 GLY B 75 1 10 HELIX 13 AB4 TRP B 77 GLY B 84 1 8 HELIX 14 AB5 ASP B 127 LYS B 133 5 7 HELIX 15 AB6 GLY B 176 THR B 180 5 5 HELIX 16 AB7 PRO B 203 VAL B 207 5 5 HELIX 17 AB8 LEU B 226 PHE B 230 5 5 HELIX 18 AB9 ALA B 231 LYS B 237 1 7 HELIX 19 AC1 SER C 8 TYR C 41 1 34 HELIX 20 AC2 ARG C 43 GLY C 49 1 7 HELIX 21 AC3 GLY C 66 GLY C 75 1 10 HELIX 22 AC4 TRP C 77 GLY C 84 1 8 HELIX 23 AC5 ASP C 127 LYS C 133 5 7 HELIX 24 AC6 GLY C 176 THR C 180 5 5 HELIX 25 AC7 LEU C 226 PHE C 230 5 5 HELIX 26 AC8 ALA C 231 LYS C 237 1 7 SHEET 1 AA1 7 LEU A 93 ILE A 106 0 SHEET 2 AA1 7 THR A 112 TRP A 125 -1 O LYS A 114 N THR A 105 SHEET 3 AA1 7 GLN A 140 GLU A 154 -1 O GLU A 143 N LEU A 121 SHEET 4 AA1 7 VAL A 157 ASP A 172 -1 O MET A 166 N ILE A 146 SHEET 5 AA1 7 PHE A 51 PHE A 59 1 N VAL A 58 O LEU A 163 SHEET 6 AA1 7 GLY A 62 VAL A 65 -1 O TYR A 64 N VAL A 57 SHEET 7 AA1 7 ARG A 200 LEU A 201 -1 O ARG A 200 N GLU A 63 SHEET 1 AA2 7 LEU B 93 ILE B 106 0 SHEET 2 AA2 7 THR B 112 TRP B 125 -1 O LYS B 114 N THR B 105 SHEET 3 AA2 7 GLN B 140 GLU B 154 -1 O GLU B 143 N LEU B 121 SHEET 4 AA2 7 VAL B 157 ASP B 172 -1 O MET B 166 N ILE B 146 SHEET 5 AA2 7 PHE B 51 PHE B 59 1 N VAL B 58 O LEU B 163 SHEET 6 AA2 7 GLY B 62 VAL B 65 -1 O TYR B 64 N VAL B 57 SHEET 7 AA2 7 ARG B 200 LEU B 201 -1 O ARG B 200 N GLU B 63 SHEET 1 AA3 7 LEU C 93 ILE C 106 0 SHEET 2 AA3 7 THR C 112 TRP C 125 -1 O GLY C 124 N LEU C 94 SHEET 3 AA3 7 GLN C 140 GLU C 154 -1 O GLU C 143 N LEU C 121 SHEET 4 AA3 7 VAL C 157 ASP C 172 -1 O VAL C 157 N GLU C 154 SHEET 5 AA3 7 PHE C 51 PHE C 59 1 N VAL C 58 O LEU C 163 SHEET 6 AA3 7 GLY C 62 VAL C 65 -1 O TYR C 64 N VAL C 57 SHEET 7 AA3 7 ARG C 200 LEU C 201 -1 O ARG C 200 N GLU C 63 CISPEP 1 GLY A 88 PRO A 89 0 1.89 CISPEP 2 PHE A 191 PRO A 192 0 -0.16 CISPEP 3 TRP A 211 PRO A 212 0 12.19 CISPEP 4 GLY B 88 PRO B 89 0 -0.13 CISPEP 5 PHE B 191 PRO B 192 0 0.16 CISPEP 6 TRP B 211 PRO B 212 0 10.92 CISPEP 7 GLY C 88 PRO C 89 0 1.22 CISPEP 8 PHE C 191 PRO C 192 0 -0.46 CISPEP 9 TRP C 211 PRO C 212 0 12.59 CRYST1 113.384 66.002 107.051 90.00 108.68 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008820 0.000000 0.002981 0.00000 SCALE2 0.000000 0.015151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009860 0.00000