HEADER LYASE 04-JUL-22 8ABW TITLE CRYSTAL STRUCTURE OF SPLDPA IN COMPLEX WITH THREO-DGPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNOAL-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. SYK-6; SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 STRAIN: NBRC 103272 / SYK-6; SOURCE 5 GENE: SLG_12650; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LIGNIN, LYASE, DEHYDRATASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,E.KUATSJAH,G.T.BECKHAM,J.E.MCGEEHAN REVDAT 2 01-MAY-24 8ABW 1 REMARK REVDAT 1 01-FEB-23 8ABW 0 JRNL AUTH E.KUATSJAH,M.ZAHN,X.CHEN,R.KATO,D.J.HINCHEN,M.O.KONEV, JRNL AUTH 2 R.KATAHIRA,C.ORR,A.WAGNER,Y.ZOU,S.J.HAUGEN,K.J.RAMIREZ, JRNL AUTH 3 J.K.MICHENER,A.R.PICKFORD,N.KAMIMURA,E.MASAI,K.N.HOUK, JRNL AUTH 4 J.E.MCGEEHAN,G.T.BECKHAM JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF A JRNL TITL 2 SPHINGOMONAD DIARYLPROPANE LYASE FOR COFACTORLESS JRNL TITL 3 DEFORMYLATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 46120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 36652470 JRNL DOI 10.1073/PNAS.2212246120 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 73.7 REMARK 3 NUMBER OF REFLECTIONS : 16207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.356 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 1 REMARK 3 BIN FREE R VALUE : 0.0540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22700 REMARK 3 B22 (A**2) : 0.22700 REMARK 3 B33 (A**2) : -0.73500 REMARK 3 B12 (A**2) : 0.11300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2112 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1909 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2865 ; 1.665 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4385 ; 1.355 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 7.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;32.661 ;22.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;15.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2378 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 518 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 411 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 115 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 974 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 138 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 967 ; 1.365 ; 2.243 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 966 ; 1.353 ; 2.238 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 2.210 ; 3.350 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1208 ; 2.210 ; 3.355 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 2.121 ; 2.548 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1146 ; 2.120 ; 2.549 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1658 ; 2.805 ; 3.732 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1659 ; 2.804 ; 3.733 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 240 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 RESIDUE RANGE : A 601 A 601 REMARK 3 RESIDUE RANGE : A 603 A 603 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1660 17.1037 16.9099 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.0585 REMARK 3 T33: 0.0602 T12: -0.0148 REMARK 3 T13: 0.0166 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0622 L22: 1.3221 REMARK 3 L33: 0.4219 L12: -0.0061 REMARK 3 L13: -0.1590 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.1050 S13: -0.0069 REMARK 3 S21: -0.0650 S22: -0.0103 S23: -0.2512 REMARK 3 S31: -0.0397 S32: 0.1217 S33: 0.0101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8ABW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292121386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.711 REMARK 200 RESOLUTION RANGE LOW (A) : 86.085 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 20.20 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.8 REMARK 200 DATA REDUNDANCY IN SHELL : 19.80 REMARK 200 R MERGE FOR SHELL (I) : 2.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NALDPA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.2 M MGCL2, 0.1 M HEPES REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -34.99150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 60.60706 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -69.98300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 402 LIES ON A SPECIAL POSITION. REMARK 375 O2 SO4 A 402 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 403 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 639 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 640 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 641 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PRO A 241 REMARK 465 ALA A 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 LJC A 404 O HOH A 501 2.04 REMARK 500 OE1 GLU A 189 O HOH A 502 2.07 REMARK 500 OE1 GLU A 12 O HOH A 503 2.12 REMARK 500 OE2 GLU A 139 O2 LJC A 404 2.14 REMARK 500 O ALA A 9 O HOH A 504 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 73 -79.94 -83.35 REMARK 500 LEU A 91 61.34 -150.12 REMARK 500 TRP A 207 128.79 -39.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 8ABW A 1 242 UNP G2IQR8 G2IQR8_SPHSK 1 242 SEQADV 8ABW MET A -20 UNP G2IQR8 INITIATING METHIONINE SEQADV 8ABW GLY A -19 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW SER A -18 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW SER A -17 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW HIS A -16 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW HIS A -15 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW HIS A -14 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW HIS A -13 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW HIS A -12 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW HIS A -11 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW SER A -10 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW SER A -9 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW GLY A -8 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW LEU A -7 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW VAL A -6 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW PRO A -5 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW ARG A -4 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW GLY A -3 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW SER A -2 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW HIS A -1 UNP G2IQR8 EXPRESSION TAG SEQADV 8ABW MET A 0 UNP G2IQR8 EXPRESSION TAG SEQRES 1 A 263 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 263 LEU VAL PRO ARG GLY SER HIS MET MET ALA ASP VAL GLU SEQRES 3 A 263 THR ARG LEU ALA GLU LEU GLU LYS LYS VAL GLN GLN LEU SEQRES 4 A 263 GLU ASP VAL ASN ALA ILE ARG ARG LEU GLN TRP ALA TYR SEQRES 5 A 263 GLY TYR TYR ILE ASP TYR ASN ARG PRO GLU GLU VAL ALA SEQRES 6 A 263 GLY LEU PHE ALA LYS ASP GLY VAL VAL VAL PHE LEU SER SEQRES 7 A 263 GLY GLU TYR VAL GLY TYR GLU GLY VAL MET ARG LEU TYR SEQRES 8 A 263 GLY THR TRP PHE GLN ASN ARG PHE THR GLY GLY ARG ARG SEQRES 9 A 263 GLY PRO VAL HIS GLY LEU LEU LEU ASP HIS PHE GLN LEU SEQRES 10 A 263 GLN ASP ILE ILE THR VAL ALA GLU ASP GLY GLN THR ALA SEQRES 11 A 263 LYS GLY ARG PHE ARG GLY ILE LEU ALA GLY GLY TRP HIS SEQRES 12 A 263 ASP GLU VAL LEU HIS GLU LYS PRO ASP GLU VAL PRO GLN SEQRES 13 A 263 GLN PHE TRP GLU SER GLY LEU TYR GLU ASN ASP TYR VAL SEQRES 14 A 263 LYS GLU ASP GLY VAL TRP LYS ILE LYS ARG LEU ASP TYR SEQRES 15 A 263 MET MET GLN TRP GLN GLY ASP TYR GLU THR GLY TRP ALA SEQRES 16 A 263 HIS THR VAL ALA HIS LEU GLN PRO ALA LEU VAL CYS TYR SEQRES 17 A 263 PRO GLU ASN PRO ASP GLY PRO ASP ARG ILE LEU PRO GLN SEQRES 18 A 263 LYS ASP VAL ARG GLN THR TRP PRO HIS ARG TYR GLU VAL SEQRES 19 A 263 PRO MET SER PHE ALA HIS PRO VAL LEU GLY LYS ALA PHE SEQRES 20 A 263 MET VAL GLU ASN PHE THR PRO MET MET MET LYS LYS GLU SEQRES 21 A 263 LYS PRO ALA HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET LJC A 404 23 HET LHX A 405 23 HETNAM SO4 SULFATE ION HETNAM LJC (1S,2S)-1,2-BIS(3-METHOXY-4-OXIDANYL-PHENYL)PROPANE-1, HETNAM 2 LJC 3-DIOL HETNAM LHX (1R,2R)-1,2-BIS(3-METHOXY-4-OXIDANYL-PHENYL)PROPANE-1, HETNAM 2 LHX 3-DIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 LJC C17 H20 O6 FORMUL 6 LHX C17 H20 O6 FORMUL 7 HOH *142(H2 O) HELIX 1 AA1 HIS A -1 TYR A 37 1 39 HELIX 2 AA2 ARG A 39 GLY A 45 1 7 HELIX 3 AA3 GLY A 62 GLY A 71 1 10 HELIX 4 AA4 TRP A 73 GLY A 80 1 8 HELIX 5 AA5 ASP A 123 LYS A 129 5 7 HELIX 6 AA6 GLY A 172 THR A 176 5 5 HELIX 7 AA7 PRO A 199 VAL A 203 5 5 HELIX 8 AA8 LEU A 222 PHE A 226 5 5 HELIX 9 AA9 MET A 227 MET A 235 5 9 SHEET 1 AA1 7 LEU A 89 VAL A 102 0 SHEET 2 AA1 7 THR A 108 TRP A 121 -1 O GLY A 120 N LEU A 90 SHEET 3 AA1 7 GLN A 136 GLU A 150 -1 O GLU A 139 N LEU A 117 SHEET 4 AA1 7 VAL A 153 ASP A 168 -1 O GLY A 167 N TRP A 138 SHEET 5 AA1 7 PHE A 47 PHE A 55 1 N VAL A 54 O LEU A 159 SHEET 6 AA1 7 GLY A 58 VAL A 61 -1 O TYR A 60 N VAL A 53 SHEET 7 AA1 7 ARG A 196 ILE A 197 -1 O ARG A 196 N GLU A 59 CISPEP 1 GLY A 84 PRO A 85 0 2.60 CISPEP 2 TYR A 187 PRO A 188 0 2.04 CISPEP 3 TRP A 207 PRO A 208 0 8.78 CRYST1 69.983 69.983 85.892 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014289 0.008250 0.000000 0.00000 SCALE2 0.000000 0.016500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011643 0.00000