HEADER HYDROLASE 08-JUL-22 8ADD TITLE VIRAL TEGUMENT-LIKE DUBS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.4.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: LOC108180207; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINATING ENZYME, UBIQUITIN, TEGUMENT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.ERVEN,E.T.ABRAHAM,T.HERMANNS,K.HOFMANN,U.BAUMANN REVDAT 1 15-FEB-23 8ADD 0 JRNL AUTH I.ERVEN,E.ABRAHAM,T.HERMANNS,U.BAUMANN,K.HOFMANN JRNL TITL A WIDELY DISTRIBUTED FAMILY OF EUKARYOTIC AND BACTERIAL JRNL TITL 2 DEUBIQUITINASES RELATED TO HERPESVIRAL LARGE TEGUMENT JRNL TITL 3 PROTEINS. JRNL REF NAT COMMUN V. 13 7643 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36496440 JRNL DOI 10.1038/S41467-022-35244-Y REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.HERMANNS,C.PICHLO,U.BAUMANN,K.HOFMANN REMARK 1 TITL A STRUCTURAL BASIS FOR THE DIVERSE LINKAGE SPECIFICITIES REMARK 1 TITL 2 WITHIN THE ZUFSP DEUBIQUITINASE FAMILY. REMARK 1 REF NAT COMMUN V. 13 401 2022 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 35058438 REMARK 1 DOI 10.1038/S41467-022-28049-6 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.HERMANNS,C.PICHLO,I.WOIWODE,K.KLOPFFLEISCH,K.F.WITTING, REMARK 1 AUTH 2 H.OVAA,U.BAUMANN,K.HOFMANN REMARK 1 TITL A FAMILY OF UNCONVENTIONAL DEUBIQUITINASES WITH MODULAR REMARK 1 TITL 2 CHAIN SPECIFICITY DETERMINANTS. REMARK 1 REF NAT COMMUN V. 9 799 2018 REMARK 1 REFN ESSN 2041-1723 REMARK 1 DOI 10.1038/S41467-018-03148-5 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4478 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.430 REMARK 3 FREE R VALUE TEST SET COUNT : 2783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3700 - 5.1600 1.00 1746 137 0.1833 0.2786 REMARK 3 2 5.1500 - 4.0900 1.00 1753 140 0.1312 0.1820 REMARK 3 3 4.0900 - 3.5800 1.00 1737 129 0.1437 0.1804 REMARK 3 4 3.5800 - 3.2500 1.00 1713 142 0.1504 0.1905 REMARK 3 5 3.2500 - 3.0200 1.00 1741 148 0.1612 0.2104 REMARK 3 6 3.0200 - 2.8400 1.00 1713 145 0.1612 0.2062 REMARK 3 7 2.8400 - 2.7000 1.00 1759 138 0.1670 0.1883 REMARK 3 8 2.7000 - 2.5800 1.00 1732 140 0.1594 0.2055 REMARK 3 9 2.5800 - 2.4800 1.00 1714 133 0.1627 0.2132 REMARK 3 10 2.4800 - 2.3900 1.00 1773 132 0.1522 0.2221 REMARK 3 11 2.3900 - 2.3200 1.00 1726 147 0.1586 0.1801 REMARK 3 12 2.3200 - 2.2500 1.00 1726 139 0.1545 0.1883 REMARK 3 13 2.2500 - 2.1900 1.00 1768 138 0.1645 0.2105 REMARK 3 14 2.1900 - 2.1400 1.00 1670 139 0.1560 0.2193 REMARK 3 15 2.1400 - 2.0900 1.00 1767 138 0.1584 0.2418 REMARK 3 16 2.0900 - 2.0500 1.00 1734 143 0.1737 0.2173 REMARK 3 17 2.0500 - 2.0100 1.00 1723 128 0.2017 0.2544 REMARK 3 18 2.0100 - 1.9700 1.00 1744 149 0.2042 0.2500 REMARK 3 19 1.9700 - 1.9300 1.00 1722 140 0.2350 0.2334 REMARK 3 20 1.9300 - 1.9000 1.00 1695 138 0.2754 0.3470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.145 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.666 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1705 REMARK 3 ANGLE : 0.848 2302 REMARK 3 CHIRALITY : 0.045 257 REMARK 3 PLANARITY : 0.006 302 REMARK 3 DIHEDRAL : 6.596 231 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0194 10.7475 28.6156 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1596 REMARK 3 T33: 0.1832 T12: 0.0026 REMARK 3 T13: 0.0072 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.5333 L22: 0.3567 REMARK 3 L33: 0.9603 L12: -0.2379 REMARK 3 L13: -0.0126 L23: -0.4744 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0142 S13: 0.0372 REMARK 3 S21: 0.1098 S22: -0.0984 S23: 0.0459 REMARK 3 S31: 0.0921 S32: -0.0962 S33: -0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9965 19.9456 20.5907 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.2460 REMARK 3 T33: 0.2004 T12: -0.0057 REMARK 3 T13: 0.0082 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2333 L22: 0.1589 REMARK 3 L33: 0.1920 L12: -0.0280 REMARK 3 L13: 0.0378 L23: -0.0252 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: 0.2656 S13: 0.0865 REMARK 3 S21: -0.0727 S22: 0.0750 S23: 0.1623 REMARK 3 S31: 0.1560 S32: -0.2983 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.0379 33.7457 12.5425 REMARK 3 T TENSOR REMARK 3 T11: 0.3051 T22: 0.3630 REMARK 3 T33: 0.2809 T12: -0.0021 REMARK 3 T13: -0.0019 T23: 0.0843 REMARK 3 L TENSOR REMARK 3 L11: 0.0020 L22: 0.0518 REMARK 3 L33: 0.0409 L12: 0.0102 REMARK 3 L13: 0.0050 L23: 0.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.1773 S12: 0.4367 S13: 0.2457 REMARK 3 S21: -0.3940 S22: -0.1709 S23: -0.0725 REMARK 3 S31: -0.2633 S32: 0.4396 S33: -0.0019 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.1415 21.8824 27.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1819 REMARK 3 T33: 0.1826 T12: 0.0097 REMARK 3 T13: -0.0211 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8091 L22: 0.4080 REMARK 3 L33: 1.0542 L12: 0.3219 REMARK 3 L13: -0.1025 L23: -0.5808 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: -0.0328 S13: 0.0053 REMARK 3 S21: 0.0414 S22: -0.0508 S23: -0.0492 REMARK 3 S31: -0.0541 S32: 0.1550 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 498 THROUGH 510 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5709 25.5545 24.8599 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.2144 REMARK 3 T33: 0.1913 T12: 0.0220 REMARK 3 T13: 0.0002 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1166 L22: 0.3028 REMARK 3 L33: 0.1733 L12: 0.1427 REMARK 3 L13: 0.0494 L23: 0.2086 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.1248 S13: -0.0566 REMARK 3 S21: -0.0164 S22: 0.0017 S23: 0.1202 REMARK 3 S31: 0.1093 S32: -0.1161 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ADD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9747 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37456 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% W/V PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.08500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 17.08500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.33500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.33500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.08500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.50500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.33500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 17.08500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.50500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.33500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 455 OD1 ASP A 457 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 813 O HOH A 813 4557 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 384 -146.17 -93.23 REMARK 500 PRO A 405 150.40 -49.72 REMARK 500 SER A 422 -33.47 -151.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8ADB RELATED DB: PDB REMARK 900 TEGUMENT-LIKE D REMARK 900 RELATED ID: 8ADC RELATED DB: PDB REMARK 900 TEGUMENT-LIKE DUB DBREF1 8ADD A 300 510 UNP A0A2R8QJQ6_DANRE DBREF2 8ADD A A0A2R8QJQ6 300 510 SEQADV 8ADD GLY A -1 UNP A0A2R8QJQ EXPRESSION TAG SEQADV 8ADD PRO A 0 UNP A0A2R8QJQ EXPRESSION TAG SEQADV 8ADD GLN A 411 UNP A0A2R8QJQ GLU 411 CONFLICT SEQADV 8ADD LYS A 459 UNP A0A2R8QJQ MET 459 CONFLICT SEQRES 1 A 213 GLY PRO LEU SER VAL ALA ALA SER HIS CYS GLN SER ASP SEQRES 2 A 213 VAL ARG TYR ASP SER ASN SER ARG ASN ARG GLN CSD THR SEQRES 3 A 213 CYS ASN ALA LEU MSE PHE LEU ALA VAL HIS ASN GLU SER SEQRES 4 A 213 ASN GLN LEU GLN SER ALA ASP LEU ASP CYS VAL LEU GLN SEQRES 5 A 213 LYS GLY ASP ALA VAL TYR SER SER VAL LYS ARG SER LEU SEQRES 6 A 213 GLN ASN LYS GLY GLN PHE VAL HIS ASP PHE LEU ASN PHE SEQRES 7 A 213 ASP GLU LEU PRO SER THR ILE GLU THR ASN SER ARG CYS SEQRES 8 A 213 TYR ASN ILE VAL LYS HIS PRO GLN ARG PHE GLY PHE LEU SEQRES 9 A 213 LYS ASP THR PRO ALA LEU GLY GLU TYR GLN ASN LEU GLU SEQRES 10 A 213 ASN THR LEU GLN CYS LEU LYS SER GLY LEU THR ASP ALA SEQRES 11 A 213 LEU LEU LEU CYS GLY GLY SER CYS ILE ALA VAL PHE ARG SEQRES 12 A 213 ASP ARG THR GLY ARG PHE GLY TYR PHE ASP SER HIS SER SEQRES 13 A 213 ARG THR PRO ASP GLY LYS TYR THR GLY GLU LYS SER GLY SEQRES 14 A 213 THR ALA VAL MSE LEU THR PHE LEU HIS LEU LYS ALA MSE SEQRES 15 A 213 VAL GLU LYS LEU LEU GLN LEU PHE GLN GLY CYS LEU GLN SEQRES 16 A 213 LEU SER ASP GLN GLU GLN PHE ASP LEU LEU PRO VAL SER SEQRES 17 A 213 PHE ILE GLU ILE THR MODRES 8ADD CSD A 601 CYS MODIFIED RESIDUE MODRES 8ADD MSE A 328 MET MODIFIED RESIDUE MODRES 8ADD MSE A 470 MET MODIFIED RESIDUE MODRES 8ADD MSE A 479 MET MODIFIED RESIDUE HET CSD A 601 13 HET MSE A 328 17 HET MSE A 470 17 HET MSE A 479 17 HETNAM CSD 3-SULFINOALANINE HETNAM MSE SELENOMETHIONINE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 HOH *158(H2 O) HELIX 1 AA1 GLN A 321 SER A 336 1 16 HELIX 2 AA2 GLN A 340 LYS A 365 1 26 HELIX 3 AA3 ASN A 374 LEU A 378 5 5 HELIX 4 AA4 LEU A 413 LEU A 417 1 5 HELIX 5 AA5 GLN A 418 SER A 422 5 5 HELIX 6 AA6 HIS A 475 GLY A 489 1 15 SHEET 1 AA1 8 LEU A 300 ALA A 303 0 SHEET 2 AA1 8 THR A 467 PHE A 473 -1 O MSE A 470 N VAL A 302 SHEET 3 AA1 8 PHE A 446 ARG A 454 -1 N PHE A 446 O PHE A 473 SHEET 4 AA1 8 SER A 434 ARG A 440 -1 N ALA A 437 O PHE A 449 SHEET 5 AA1 8 ASP A 426 CYS A 431 -1 N LEU A 429 O ILE A 436 SHEET 6 AA1 8 GLN A 498 GLU A 508 -1 O LEU A 502 N LEU A 428 SHEET 7 AA1 8 CYS A 388 LYS A 393 -1 N ASN A 390 O ILE A 507 SHEET 8 AA1 8 THR A 381 GLU A 383 -1 N ILE A 382 O TYR A 389 SHEET 1 AA2 8 LEU A 300 ALA A 303 0 SHEET 2 AA2 8 THR A 467 PHE A 473 -1 O MSE A 470 N VAL A 302 SHEET 3 AA2 8 PHE A 446 ARG A 454 -1 N PHE A 446 O PHE A 473 SHEET 4 AA2 8 SER A 434 ARG A 440 -1 N ALA A 437 O PHE A 449 SHEET 5 AA2 8 ASP A 426 CYS A 431 -1 N LEU A 429 O ILE A 436 SHEET 6 AA2 8 GLN A 498 GLU A 508 -1 O LEU A 502 N LEU A 428 SHEET 7 AA2 8 ARG A 397 PHE A 400 -1 N ARG A 397 O LEU A 501 SHEET 8 AA2 8 GLN A 411 ASN A 412 1 O GLN A 411 N PHE A 400 LINK C GLN A 321 N CSD A 601 1555 1555 1.33 LINK N THR A 323 C CSD A 601 1555 1555 1.32 LINK C LEU A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N PHE A 329 1555 1555 1.34 LINK C VAL A 469 N MSE A 470 1555 1555 1.33 LINK C MSE A 470 N LEU A 471 1555 1555 1.33 LINK C ALA A 478 N MSE A 479 1555 1555 1.33 LINK C MSE A 479 N VAL A 480 1555 1555 1.33 CRYST1 119.010 120.670 34.170 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029265 0.00000