HEADER LYASE 11-JUL-22 8ADQ TITLE CRYSTAL STRUCTURE OF HOLO-SWHPA-MG (HYDROXY KETONE ALDOLASE) FROM TITLE 2 SPHINGOMONAS WITTICHII RW1 IN COMPLEX WITH HYDROXYPYRUVATE AND D- TITLE 3 GLYCERALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HPCH/HPAI ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZORHABDUS WITTICHII RW1; SOURCE 3 ORGANISM_TAXID: 392499; SOURCE 4 STRAIN: DSM 6014 / CCUG 31198 / JCM 15750 / NBRC 105917 / EY 4224 / SOURCE 5 RW1; SOURCE 6 GENE: SWIT_5035; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROXY-KETO ALDOLASE; ALDOL CONDENSATION; ALDOL CLEAVAGE; KEYWDS 2 STEREOSPECIFICITY; TIM BARREL FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR I.JUSTO,S.R.MARSDEN,U.HANEFELD,I.BENTO REVDAT 3 31-JAN-24 8ADQ 1 REMARK REVDAT 2 07-DEC-22 8ADQ 1 JRNL REVDAT 1 23-NOV-22 8ADQ 0 JRNL AUTH S.R.MARSDEN,H.J.WIJMA,M.K.F.MOHR,I.JUSTO,P.L.HAGEDOORN, JRNL AUTH 2 J.LAUSTSEN,C.M.JEFFRIES,D.SVERGUN,L.MESTROM,D.G.G.MCMILLAN, JRNL AUTH 3 I.BENTO,U.HANEFELD JRNL TITL SUBSTRATE INDUCED MOVEMENT OF THE METAL COFACTOR BETWEEN JRNL TITL 2 ACTIVE AND RESTING STATE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 13338 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 36214476 JRNL DOI 10.1002/ANIE.202213338 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.7600 - 2.9900 1.00 2650 154 0.1547 0.1895 REMARK 3 2 2.9900 - 2.6100 1.00 2642 132 0.1789 0.2224 REMARK 3 3 2.6100 - 2.3700 1.00 2586 151 0.1584 0.1989 REMARK 3 4 2.3700 - 2.2000 1.00 2588 139 0.1621 0.2086 REMARK 3 5 2.2000 - 2.0700 1.00 2587 121 0.1793 0.2151 REMARK 3 6 2.0700 - 1.9700 1.00 2571 144 0.1840 0.1991 REMARK 3 7 1.9700 - 1.8800 1.00 2553 139 0.1884 0.2319 REMARK 3 8 1.8800 - 1.8100 1.00 2564 129 0.2128 0.2663 REMARK 3 9 1.8100 - 1.7500 1.00 2565 121 0.2397 0.2670 REMARK 3 10 1.7500 - 1.6900 1.00 2564 122 0.2869 0.3388 REMARK 3 11 1.6900 - 1.6400 1.00 2535 141 0.2744 0.3360 REMARK 3 12 1.6400 - 1.6000 1.00 2534 141 0.2818 0.3219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.201 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1979 REMARK 3 ANGLE : 1.164 2678 REMARK 3 CHIRALITY : 0.064 303 REMARK 3 PLANARITY : 0.014 356 REMARK 3 DIHEDRAL : 12.551 293 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9994 28.4677 36.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.2809 T22: 0.4243 REMARK 3 T33: 0.3503 T12: -0.0580 REMARK 3 T13: -0.0450 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 3.4925 L22: 3.5088 REMARK 3 L33: 2.8446 L12: 0.5324 REMARK 3 L13: -1.1960 L23: 0.2365 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.7242 S13: 0.0486 REMARK 3 S21: 0.4688 S22: -0.1409 S23: 0.3662 REMARK 3 S31: 0.0119 S32: -0.0313 S33: 0.0757 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2421 23.8614 26.1153 REMARK 3 T TENSOR REMARK 3 T11: 0.2797 T22: 0.3420 REMARK 3 T33: 0.3114 T12: -0.0698 REMARK 3 T13: -0.0552 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 0.6369 L22: 1.3606 REMARK 3 L33: 0.9902 L12: 0.1531 REMARK 3 L13: 0.3112 L23: -0.1383 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.1096 S13: 0.0727 REMARK 3 S21: -0.0921 S22: -0.0158 S23: 0.1435 REMARK 3 S31: 0.0539 S32: -0.1272 S33: -0.0163 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6128 39.7401 22.9426 REMARK 3 T TENSOR REMARK 3 T11: 0.2932 T22: 0.3279 REMARK 3 T33: 0.4204 T12: -0.0169 REMARK 3 T13: -0.1079 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 1.5796 L22: 1.6455 REMARK 3 L33: 1.0878 L12: 1.2606 REMARK 3 L13: 0.3795 L23: 0.2753 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: -0.1275 S13: 0.3278 REMARK 3 S21: -0.1019 S22: -0.0535 S23: 0.4178 REMARK 3 S31: -0.0919 S32: -0.2308 S33: 0.1205 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ADQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976200 REMARK 200 MONOCHROMATOR : MD2 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 30.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 39.90 REMARK 200 R MERGE FOR SHELL (I) : 2.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6R62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.44 M-0.65 M SODIUM CITRATE 0.1 M REMARK 280 HEPES AT PH 7.0., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 57.89650 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 57.89650 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 57.89650 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 57.89650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 57.89650 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 57.89650 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 57.89650 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 57.89650 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 57.89650 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 57.89650 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 57.89650 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 57.89650 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 57.89650 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 57.89650 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 57.89650 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 57.89650 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 57.89650 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 57.89650 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 57.89650 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 57.89650 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 57.89650 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 57.89650 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 57.89650 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 57.89650 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 57.89650 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 57.89650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 57.89650 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 57.89650 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 57.89650 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 57.89650 REMARK 350 BIOMT2 5 0.000000 0.000000 -1.000000 57.89650 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 57.89650 REMARK 350 BIOMT1 6 0.000000 0.000000 -1.000000 57.89650 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 57.89650 REMARK 350 BIOMT3 6 -1.000000 0.000000 0.000000 57.89650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 587 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 595 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 637 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 41 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 44 66.77 -109.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 242 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 304 REMARK 610 PEG A 305 REMARK 610 PEG A 306 REMARK 610 PEG A 307 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 313 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 31 O REMARK 620 2 LEU A 33 O 77.6 REMARK 620 3 TYR A 35 O 103.0 86.3 REMARK 620 4 GLY A 63 O 89.9 167.4 98.2 REMARK 620 5 HOH A 545 O 81.6 103.9 169.6 72.2 REMARK 620 6 HOH A 593 O 177.7 103.8 79.0 88.7 96.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE1 REMARK 620 2 ASP A 171 OD2 91.4 REMARK 620 3 3PY A 301 O1 94.4 91.5 REMARK 620 4 3PY A 301 O3 103.9 161.1 76.5 REMARK 620 5 HOH A 435 O 170.7 80.1 89.7 85.2 REMARK 620 6 HOH A 456 O 86.5 97.9 170.5 94.1 90.8 REMARK 620 N 1 2 3 4 5 DBREF 8ADQ A 2 251 UNP A5VH82 A5VH82_RHIWR 2 251 SEQADV 8ADQ MET A -5 UNP A5VH82 INITIATING METHIONINE SEQADV 8ADQ HIS A -4 UNP A5VH82 EXPRESSION TAG SEQADV 8ADQ HIS A -3 UNP A5VH82 EXPRESSION TAG SEQADV 8ADQ HIS A -2 UNP A5VH82 EXPRESSION TAG SEQADV 8ADQ HIS A -1 UNP A5VH82 EXPRESSION TAG SEQADV 8ADQ HIS A 0 UNP A5VH82 EXPRESSION TAG SEQADV 8ADQ HIS A 1 UNP A5VH82 EXPRESSION TAG SEQRES 1 A 257 MET HIS HIS HIS HIS HIS HIS ASN LYS VAL ARG THR CYS SEQRES 2 A 257 TRP ASN GLU GLY ARG PRO ALA LEU ALA GLY TRP LEU GLN SEQRES 3 A 257 LEU PRO GLY THR LEU HIS ALA GLU ALA LEU ALA ARG LEU SEQRES 4 A 257 ASP TYR ASP ALA VAL VAL ILE ASP MET GLN HIS SER PRO SEQRES 5 A 257 ILE ASP PHE GLY GLN VAL ALA PRO MET LEU ILE ALA ILE SEQRES 6 A 257 GLU LEU GLY GLY ALA GLU PRO PHE VAL ARG THR GLN VAL SEQRES 7 A 257 ASN ASP PRO SER ASP ILE MET LYS LEU LEU ASP ALA GLY SEQRES 8 A 257 ALA TYR GLY ILE ILE ALA PRO MET VAL ASN THR ARG ALA SEQRES 9 A 257 GLU ALA GLN THR LEU ALA SER ALA LEU HIS TYR SER PRO SEQRES 10 A 257 ARG GLY LEU ARG SER PHE GLY PRO ARG ARG PRO SER LEU SEQRES 11 A 257 ARG TYR GLY SER GLY TYR LEU ALA GLN ALA SER GLU THR SEQRES 12 A 257 VAL VAL GLY LEU ALA MET ILE GLU THR ARG GLU ALA LEU SEQRES 13 A 257 ALA ASN ILE ASP GLU ILE LEU SER VAL ASP GLY ILE ASP SEQRES 14 A 257 GLY VAL PHE ILE GLY PRO THR ASP LEU ALA LEU ASP LEU SEQRES 15 A 257 GLY HIS ALA PRO LEU VAL ASP THR GLU GLU ALA GLU VAL SEQRES 16 A 257 VAL SER ALA ILE ALA HIS VAL ARG GLU ARG ALA HIS ALA SEQRES 17 A 257 ALA GLY LYS ARG VAL GLY ILE PHE CYS GLY SER GLY GLY SEQRES 18 A 257 PHE ALA ARG VAL LYS LEU ALA GLU GLY PHE ASP PHE VAL SEQRES 19 A 257 THR ALA ALA PRO ASP LEU ALA MET LEU SER ALA ALA ALA SEQRES 20 A 257 ARG GLN VAL ILE ALA ASP ALA ARG ALA LEU HET 3PY A 301 10 HET 3GR A 302 12 HET 3GR A 303 12 HET PEG A 304 9 HET PEG A 305 4 HET PEG A 306 9 HET PEG A 307 9 HET PEG A 308 17 HET MG A 309 1 HET BR A 310 1 HET BR A 311 1 HET BR A 312 1 HET K A 313 1 HETNAM 3PY 3-HYDROXYPYRUVIC ACID HETNAM 3GR D-GLYCERALDEHYDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETNAM BR BROMIDE ION HETNAM K POTASSIUM ION HETSYN 3GR GLYCERALDEHYDE; (2R)-2,3-DIHYDROXYPROPANAL FORMUL 2 3PY C3 H4 O4 FORMUL 3 3GR 2(C3 H6 O3) FORMUL 5 PEG 5(C4 H10 O3) FORMUL 10 MG MG 2+ FORMUL 11 BR 3(BR 1-) FORMUL 14 K K 1+ FORMUL 15 HOH *241(H2 O) HELIX 1 AA1 ASN A 2 GLU A 10 1 9 HELIX 2 AA2 THR A 24 ARG A 32 1 9 HELIX 3 AA3 ASP A 48 GLY A 63 1 16 HELIX 4 AA4 ASP A 74 ALA A 84 1 11 HELIX 5 AA5 THR A 96 HIS A 108 1 13 HELIX 6 AA6 PRO A 119 GLY A 127 1 9 HELIX 7 AA7 GLY A 129 ALA A 134 1 6 HELIX 8 AA8 SER A 135 VAL A 138 5 4 HELIX 9 AA9 THR A 146 ASN A 152 1 7 HELIX 10 AB1 ASN A 152 SER A 158 1 7 HELIX 11 AB2 GLY A 168 LEU A 176 1 9 HELIX 12 AB3 GLU A 186 ALA A 203 1 18 HELIX 13 AB4 SER A 213 GLY A 224 1 12 HELIX 14 AB5 ASP A 233 ALA A 250 1 18 SHEET 1 AA1 9 ALA A 14 LEU A 19 0 SHEET 2 AA1 9 ALA A 37 ASP A 41 1 O VAL A 39 N LEU A 19 SHEET 3 AA1 9 GLU A 65 ARG A 69 1 O PHE A 67 N ILE A 40 SHEET 4 AA1 9 GLY A 88 ALA A 91 1 O ILE A 90 N VAL A 68 SHEET 5 AA1 9 VAL A 139 ILE A 144 1 O LEU A 141 N ILE A 89 SHEET 6 AA1 9 GLY A 164 ILE A 167 1 O GLY A 164 N ALA A 142 SHEET 7 AA1 9 ARG A 206 PHE A 210 1 O GLY A 208 N ILE A 167 SHEET 8 AA1 9 PHE A 227 PRO A 232 1 O THR A 229 N ILE A 209 SHEET 9 AA1 9 ALA A 14 LEU A 19 1 N ALA A 16 O VAL A 228 LINK O ALA A 31 K K A 313 1555 1555 2.62 LINK O LEU A 33 K K A 313 1555 1555 2.64 LINK O TYR A 35 K K A 313 1555 1555 2.77 LINK O GLY A 63 K K A 313 1555 1555 2.93 LINK OE1 GLU A 145 MG MG A 309 1555 1555 2.04 LINK OD2 ASP A 171 MG MG A 309 1555 1555 2.07 LINK O1 3PY A 301 MG MG A 309 1555 1555 1.99 LINK O3 3PY A 301 MG MG A 309 1555 1555 2.15 LINK MG MG A 309 O HOH A 435 1555 9555 2.17 LINK MG MG A 309 O HOH A 456 1555 1555 2.05 LINK K K A 313 O HOH A 545 1555 1555 2.88 LINK K K A 313 O HOH A 593 1555 1555 2.69 CISPEP 1 SER A 110 PRO A 111 0 8.87 CISPEP 2 ALA A 230 ALA A 231 0 -18.99 CRYST1 115.793 115.793 115.793 90.00 90.00 90.00 P 42 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008636 0.00000