HEADER OXIDOREDUCTASE 13-JUL-22 8AEQ
TITLE MALONYL-COA REDUCTASE FROM CHLOROFLEXUS AURANTIACUS - C-TERMINAL R773Q
TITLE 2 VARIANT
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROFLEXUS AURANTIACUS J-10-FL;
SOURCE 3 ORGANISM_TAXID: 324602;
SOURCE 4 STRAIN: ATCC 29366 / DSM 635 / J-10-FL;
SOURCE 5 GENE: CAUR_2614;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ROSSMANN FOLD, SITE-DIRECTED MUTAGENESIS, BI-FUNCTIONAL ENZYME,
KEYWDS 2 REDUCTASE, MALONYL-COA, 3-HYDROXYPROPIONATE, 3-HP CYCLE,
KEYWDS 3 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR B.V.KABASAKAL,J.W.MURRAY
REVDAT 4 07-FEB-24 8AEQ 1 REMARK
REVDAT 3 06-DEC-23 8AEQ 1 JRNL
REVDAT 2 22-NOV-23 8AEQ 1 JRNL
REVDAT 1 05-APR-23 8AEQ 0
JRNL AUTH B.V.KABASAKAL,C.A.R.COTTON,J.W.MURRAY
JRNL TITL DYNAMIC LID DOMAIN OF CHLOROFLEXUS AURANTIACUS MALONYL-COA
JRNL TITL 2 REDUCTASE CONTROLS THE REACTION.
JRNL REF BIOCHIMIE V. 219 12 2023
JRNL REFN ISSN 0300-9084
JRNL PMID 37952891
JRNL DOI 10.1016/J.BIOCHI.2023.11.003
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH B.V.KABASAKAL,C.A.R.COTTON,J.W.MURRAY
REMARK 1 TITL DYNAMIC LID DOMAIN OF CHLOROFLEXUS AURANTIACUS
REMARK 1 TITL 2 MALONYL-COA REDUCTASE CONTROLS THE REACTION
REMARK 1 REF BIORXIV 2023
REMARK 1 REFN ISSN 2692-8205
REMARK 1 DOI 10.1101/2023.03.21.533589
REMARK 2
REMARK 2 RESOLUTION. 1.64 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6
REMARK 3 NUMBER OF REFLECTIONS : 104644
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.181
REMARK 3 R VALUE (WORKING SET) : 0.180
REMARK 3 FREE R VALUE : 0.206
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850
REMARK 3 FREE R VALUE TEST SET COUNT : 5076
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 10.0000 - 5.0900 0.99 3462 199 0.1628 0.1865
REMARK 3 2 5.0900 - 4.0400 0.99 3424 172 0.1363 0.1509
REMARK 3 3 4.0400 - 3.5300 0.98 3385 175 0.1419 0.1672
REMARK 3 4 3.5300 - 3.2100 0.98 3378 172 0.1638 0.1954
REMARK 3 5 3.2100 - 2.9800 0.98 3431 160 0.1808 0.1993
REMARK 3 6 2.9800 - 2.8000 0.98 3385 182 0.1849 0.2188
REMARK 3 7 2.8000 - 2.6600 0.98 3300 211 0.1888 0.2291
REMARK 3 8 2.6600 - 2.5500 0.98 3378 176 0.1826 0.2099
REMARK 3 9 2.5500 - 2.4500 0.97 3379 161 0.1791 0.2029
REMARK 3 10 2.4500 - 2.3600 0.97 3323 141 0.1802 0.1941
REMARK 3 11 2.3600 - 2.2900 0.97 3354 155 0.1781 0.1924
REMARK 3 12 2.2900 - 2.2300 0.97 3332 170 0.1785 0.2078
REMARK 3 13 2.2300 - 2.1700 0.97 3321 166 0.1867 0.2142
REMARK 3 14 2.1700 - 2.1100 0.96 3320 158 0.1964 0.2386
REMARK 3 15 2.1100 - 2.0700 0.97 3363 162 0.1942 0.2256
REMARK 3 16 2.0700 - 2.0200 0.97 3343 165 0.1913 0.2236
REMARK 3 17 2.0200 - 1.9800 0.96 3323 152 0.1971 0.2420
REMARK 3 18 1.9800 - 1.9400 0.96 3297 143 0.2009 0.2428
REMARK 3 19 1.9400 - 1.9100 0.96 3269 159 0.2104 0.2433
REMARK 3 20 1.9100 - 1.8800 0.96 3296 174 0.2184 0.2633
REMARK 3 21 1.8800 - 1.8500 0.96 3276 179 0.2387 0.2387
REMARK 3 22 1.8500 - 1.8200 0.96 3254 171 0.2655 0.2974
REMARK 3 23 1.8200 - 1.7900 0.96 3313 165 0.2853 0.3326
REMARK 3 24 1.7900 - 1.7700 0.96 3267 186 0.2909 0.3375
REMARK 3 25 1.7700 - 1.7400 0.95 3237 176 0.2801 0.3109
REMARK 3 26 1.7400 - 1.7200 0.95 3240 170 0.2814 0.2994
REMARK 3 27 1.7200 - 1.7000 0.95 3249 191 0.2800 0.2833
REMARK 3 28 1.7000 - 1.6800 0.95 3224 179 0.2978 0.3034
REMARK 3 29 1.6800 - 1.6600 0.95 3261 158 0.3080 0.3093
REMARK 3 30 1.6600 - 1.6400 0.93 3184 148 0.3188 0.3560
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 26.22
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.006 4889
REMARK 3 ANGLE : 0.765 6633
REMARK 3 CHIRALITY : 0.047 763
REMARK 3 PLANARITY : 0.007 872
REMARK 3 DIHEDRAL : 12.646 1812
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 559 THROUGH 784 )
REMARK 3 ORIGIN FOR THE GROUP (A): -7.2263 5.4252 15.9677
REMARK 3 T TENSOR
REMARK 3 T11: 0.1609 T22: 0.1945
REMARK 3 T33: 0.1731 T12: 0.0307
REMARK 3 T13: 0.0280 T23: 0.0331
REMARK 3 L TENSOR
REMARK 3 L11: 1.0527 L22: 2.4027
REMARK 3 L33: 1.5942 L12: -0.6041
REMARK 3 L13: 0.0849 L23: 0.5430
REMARK 3 S TENSOR
REMARK 3 S11: -0.0482 S12: -0.1173 S13: -0.2283
REMARK 3 S21: 0.1998 S22: 0.0221 S23: 0.2003
REMARK 3 S31: 0.2515 S32: 0.0297 S33: 0.0195
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 785 THROUGH 937 )
REMARK 3 ORIGIN FOR THE GROUP (A): -33.9105 25.9684 9.6670
REMARK 3 T TENSOR
REMARK 3 T11: 0.1970 T22: 0.2702
REMARK 3 T33: 0.4719 T12: 0.0533
REMARK 3 T13: 0.0020 T23: -0.0285
REMARK 3 L TENSOR
REMARK 3 L11: 1.4580 L22: 2.4740
REMARK 3 L33: 0.5863 L12: -1.5356
REMARK 3 L13: -0.3145 L23: 0.7071
REMARK 3 S TENSOR
REMARK 3 S11: -0.0292 S12: 0.1462 S13: -0.4308
REMARK 3 S21: 0.0100 S22: -0.2459 S23: 0.8342
REMARK 3 S31: -0.1308 S32: -0.2307 S33: 0.2117
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 938 THROUGH 1200 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.6360 37.1761 17.2457
REMARK 3 T TENSOR
REMARK 3 T11: 0.2828 T22: 0.2225
REMARK 3 T33: 0.1445 T12: -0.0225
REMARK 3 T13: 0.0191 T23: 0.0267
REMARK 3 L TENSOR
REMARK 3 L11: 0.7636 L22: 2.5046
REMARK 3 L33: 1.4558 L12: -0.4815
REMARK 3 L13: -0.4402 L23: 1.2290
REMARK 3 S TENSOR
REMARK 3 S11: 0.0553 S12: 0.0501 S13: 0.1241
REMARK 3 S21: -0.2427 S22: 0.0401 S23: -0.1750
REMARK 3 S31: -0.4240 S32: 0.1211 S33: -0.0614
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8AEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-22.
REMARK 100 THE DEPOSITION ID IS D_1292124293.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-OCT-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS
REMARK 200 DATA SCALING SOFTWARE : DIALS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 196275
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640
REMARK 200 RESOLUTION RANGE LOW (A) : 47.670
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6
REMARK 200 DATA REDUNDANCY : 1.900
REMARK 200 R MERGE (I) : 0.02829
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 11.0800
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70
REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6
REMARK 200 DATA REDUNDANCY IN SHELL : 1.90
REMARK 200 R MERGE FOR SHELL (I) : 0.83410
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 1.560
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 8A30
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.07
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, PH 6.5, 1.4 M
REMARK 280 SODIUM ACETATE TRIHYDRATE, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.03450
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.82600
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.03450
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.82600
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 47420 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1319 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1811 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 550
REMARK 465 ALA A 551
REMARK 465 THR A 552
REMARK 465 THR A 553
REMARK 465 GLY A 554
REMARK 465 ALA A 555
REMARK 465 ARG A 556
REMARK 465 SER A 557
REMARK 465 ALA A 558
REMARK 465 ARG A 775
REMARK 465 GLY A 776
REMARK 465 THR A 777
REMARK 465 GLY A 778
REMARK 465 GLU A 779
REMARK 465 ARG A 780
REMARK 465 PRO A 781
REMARK 465 GLU A 962
REMARK 465 LEU A 963
REMARK 465 ARG A 1171
REMARK 465 ALA A 1172
REMARK 465 GLU A 1173
REMARK 465 GLU A 1174
REMARK 465 PRO A 1175
REMARK 465 ARG A 1176
REMARK 465 ASP A 1177
REMARK 465 PRO A 1178
REMARK 465 HIS A 1179
REMARK 465 PRO A 1201
REMARK 465 GLU A 1202
REMARK 465 ALA A 1203
REMARK 465 ASP A 1204
REMARK 465 THR A 1205
REMARK 465 ARG A 1206
REMARK 465 TYR A 1207
REMARK 465 ALA A 1208
REMARK 465 GLY A 1209
REMARK 465 ARG A 1210
REMARK 465 ILE A 1211
REMARK 465 HIS A 1212
REMARK 465 ARG A 1213
REMARK 465 GLY A 1214
REMARK 465 ARG A 1215
REMARK 465 ALA A 1216
REMARK 465 ILE A 1217
REMARK 465 THR A 1218
REMARK 465 VAL A 1219
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A1169 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 692 -56.49 -126.86
REMARK 500 SER A 718 -154.50 -84.11
REMARK 500 GLU A 985 -54.11 -157.10
REMARK 500 THR A1069 75.43 -113.87
REMARK 500 LEU A1084 118.14 -36.59
REMARK 500 LEU A1097 -57.30 -126.57
REMARK 500 ARG A1168 -126.53 -87.42
REMARK 500 PRO A1198 -164.72 -72.38
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1836 DISTANCE = 5.92 ANGSTROMS
REMARK 525 HOH A1837 DISTANCE = 6.48 ANGSTROMS
REMARK 525 HOH A1838 DISTANCE = 6.91 ANGSTROMS
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 8A30 RELATED DB: PDB
REMARK 900 8A30 IS THE APO FORM
REMARK 900 RELATED ID: 8A7S RELATED DB: PDB
REMARK 900 8A7S IS THE NADP BOUND FORM
REMARK 900 RELATED ID: 8A8T RELATED DB: PDB
REMARK 900 8A8T IS THE NADP AND MALONATE BOUND FORM
REMARK 900 RELATED ID: 8AEO RELATED DB: PDB
REMARK 900 8AEO IS THE R773A VARIANT
DBREF 8AEQ A 550 1219 UNP A9WIU3 A9WIU3_CHLAA 550 1219
SEQADV 8AEQ GLN A 773 UNP A9WIU3 ARG 773 VARIANT
SEQRES 1 A 670 SER ALA THR THR GLY ALA ARG SER ALA SER VAL GLY TRP
SEQRES 2 A 670 ALA GLU SER LEU ILE GLY LEU HIS LEU GLY LYS VAL ALA
SEQRES 3 A 670 LEU ILE THR GLY GLY SER ALA GLY ILE GLY GLY GLN ILE
SEQRES 4 A 670 GLY ARG LEU LEU ALA LEU SER GLY ALA ARG VAL MET LEU
SEQRES 5 A 670 ALA ALA ARG ASP ARG HIS LYS LEU GLU GLN MET GLN ALA
SEQRES 6 A 670 MET ILE GLN SER GLU LEU ALA GLU VAL GLY TYR THR ASP
SEQRES 7 A 670 VAL GLU ASP ARG VAL HIS ILE ALA PRO GLY CYS ASP VAL
SEQRES 8 A 670 SER SER GLU ALA GLN LEU ALA ASP LEU VAL GLU ARG THR
SEQRES 9 A 670 LEU SER ALA PHE GLY THR VAL ASP TYR LEU ILE ASN ASN
SEQRES 10 A 670 ALA GLY ILE ALA GLY VAL GLU GLU MET VAL ILE ASP MET
SEQRES 11 A 670 PRO VAL GLU GLY TRP ARG HIS THR LEU PHE ALA ASN LEU
SEQRES 12 A 670 ILE SER ASN TYR SER LEU MET ARG LYS LEU ALA PRO LEU
SEQRES 13 A 670 MET LYS LYS GLN GLY SER GLY TYR ILE LEU ASN VAL SER
SEQRES 14 A 670 SER TYR PHE GLY GLY GLU LYS ASP ALA ALA ILE PRO TYR
SEQRES 15 A 670 PRO ASN ARG ALA ASP TYR ALA VAL SER LYS ALA GLY GLN
SEQRES 16 A 670 ARG ALA MET ALA GLU VAL PHE ALA ARG PHE LEU GLY PRO
SEQRES 17 A 670 GLU ILE GLN ILE ASN ALA ILE ALA PRO GLY PRO VAL GLU
SEQRES 18 A 670 GLY ASP GLN LEU ARG GLY THR GLY GLU ARG PRO GLY LEU
SEQRES 19 A 670 PHE ALA ARG ARG ALA ARG LEU ILE LEU GLU ASN LYS ARG
SEQRES 20 A 670 LEU ASN GLU LEU HIS ALA ALA LEU ILE ALA ALA ALA ARG
SEQRES 21 A 670 THR ASP GLU ARG SER MET HIS GLU LEU VAL GLU LEU LEU
SEQRES 22 A 670 LEU PRO ASN ASP VAL ALA ALA LEU GLU GLN ASN PRO ALA
SEQRES 23 A 670 ALA PRO THR ALA LEU ARG GLU LEU ALA ARG ARG PHE ARG
SEQRES 24 A 670 SER GLU GLY ASP PRO ALA ALA SER SER SER SER ALA LEU
SEQRES 25 A 670 LEU ASN ARG SER ILE ALA ALA LYS LEU LEU ALA ARG LEU
SEQRES 26 A 670 HIS ASN GLY GLY TYR VAL LEU PRO ALA ASP ILE PHE ALA
SEQRES 27 A 670 ASN LEU PRO ASN PRO PRO ASP PRO PHE PHE THR ARG ALA
SEQRES 28 A 670 GLN ILE ASP ARG GLU ALA ARG LYS VAL ARG ASP GLY ILE
SEQRES 29 A 670 MET GLY MET LEU TYR LEU GLN ARG MET PRO THR GLU PHE
SEQRES 30 A 670 ASP VAL ALA MET ALA THR VAL TYR TYR LEU ALA ASP ARG
SEQRES 31 A 670 ASN VAL SER GLY GLU THR PHE HIS PRO SER GLY GLY LEU
SEQRES 32 A 670 ARG TYR GLU ARG THR PRO THR GLY GLY GLU LEU PHE GLY
SEQRES 33 A 670 LEU PRO SER PRO GLU ARG LEU ALA GLU LEU VAL GLY SER
SEQRES 34 A 670 THR VAL TYR LEU ILE GLY GLU HIS LEU THR GLU HIS LEU
SEQRES 35 A 670 ASN LEU LEU ALA ARG ALA TYR LEU GLU ARG TYR GLY ALA
SEQRES 36 A 670 ARG GLN VAL VAL MET ILE VAL GLU THR GLU THR GLY ALA
SEQRES 37 A 670 GLU THR MET ARG ARG LEU LEU HIS ASP HIS VAL GLU ALA
SEQRES 38 A 670 GLY ARG LEU MET THR ILE VAL ALA GLY ASP GLN ILE GLU
SEQRES 39 A 670 ALA ALA ILE ASP GLN ALA ILE THR ARG TYR GLY ARG PRO
SEQRES 40 A 670 GLY PRO VAL VAL CYS THR PRO PHE ARG PRO LEU PRO THR
SEQRES 41 A 670 VAL PRO LEU VAL GLY ARG LYS ASP SER ASP TRP SER THR
SEQRES 42 A 670 VAL LEU SER GLU ALA GLU PHE ALA GLU LEU CYS GLU HIS
SEQRES 43 A 670 GLN LEU THR HIS HIS PHE ARG VAL ALA ARG LYS ILE ALA
SEQRES 44 A 670 LEU SER ASP GLY ALA SER LEU ALA LEU VAL THR PRO GLU
SEQRES 45 A 670 THR THR ALA THR SER THR THR GLU GLN PHE ALA LEU ALA
SEQRES 46 A 670 ASN PHE ILE LYS THR THR LEU HIS ALA PHE THR ALA THR
SEQRES 47 A 670 ILE GLY VAL GLU SER GLU ARG THR ALA GLN ARG ILE LEU
SEQRES 48 A 670 ILE ASN GLN VAL ASP LEU THR ARG ARG ALA ARG ALA GLU
SEQRES 49 A 670 GLU PRO ARG ASP PRO HIS GLU ARG GLN GLN GLU LEU GLU
SEQRES 50 A 670 ARG PHE ILE GLU ALA VAL LEU LEU VAL THR ALA PRO LEU
SEQRES 51 A 670 PRO PRO GLU ALA ASP THR ARG TYR ALA GLY ARG ILE HIS
SEQRES 52 A 670 ARG GLY ARG ALA ILE THR VAL
FORMUL 2 HOH *538(H2 O)
HELIX 1 AA1 ALA A 582 SER A 595 1 14
HELIX 2 AA2 ASP A 605 GLY A 624 1 20
HELIX 3 AA3 ASP A 627 ASP A 630 5 4
HELIX 4 AA4 SER A 642 GLY A 658 1 17
HELIX 5 AA5 MET A 675 MET A 679 5 5
HELIX 6 AA6 PRO A 680 LEU A 692 1 13
HELIX 7 AA7 LEU A 692 GLY A 710 1 19
HELIX 8 AA8 SER A 719 GLY A 723 5 5
HELIX 9 AA9 ARG A 734 GLY A 756 1 23
HELIX 10 AB1 PHE A 784 THR A 810 1 27
HELIX 11 AB2 SER A 814 LEU A 821 1 8
HELIX 12 AB3 ASP A 826 GLN A 832 1 7
HELIX 13 AB4 PRO A 837 GLU A 850 1 14
HELIX 14 AB5 ALA A 855 SER A 859 5 5
HELIX 15 AB6 ASN A 863 GLY A 877 1 15
HELIX 16 AB7 THR A 898 LEU A 917 1 20
HELIX 17 AB8 THR A 924 ALA A 937 1 14
HELIX 18 AB9 SER A 968 GLU A 974 1 7
HELIX 19 AC1 LEU A 987 ARG A 1001 1 15
HELIX 20 AC2 THR A 1013 LEU A 1024 1 12
HELIX 21 AC3 LEU A 1024 ALA A 1030 1 7
HELIX 22 AC4 GLN A 1041 GLY A 1054 1 14
HELIX 23 AC5 SER A 1085 LEU A 1097 1 13
HELIX 24 AC6 LEU A 1097 ALA A 1108 1 12
HELIX 25 AC7 THR A 1127 SER A 1152 1 26
HELIX 26 AC8 GLU A 1153 THR A 1155 5 3
HELIX 27 AC9 ARG A 1181 ALA A 1197 1 17
SHEET 1 AA1 7 VAL A 632 ALA A 635 0
SHEET 2 AA1 7 ARG A 598 ALA A 602 1 N VAL A 599 O HIS A 633
SHEET 3 AA1 7 VAL A 574 THR A 578 1 N ALA A 575 O ARG A 598
SHEET 4 AA1 7 TYR A 662 ASN A 665 1 O ILE A 664 N LEU A 576
SHEET 5 AA1 7 GLY A 712 VAL A 717 1 O LEU A 715 N LEU A 663
SHEET 6 AA1 7 ILE A 759 ILE A 764 1 O GLN A 760 N ILE A 714
SHEET 7 AA1 7 THR A 945 PHE A 946 1 O PHE A 946 N ALA A 763
SHEET 1 AA2 2 ALA A 727 ALA A 728 0
SHEET 2 AA2 2 THR A 957 PRO A 958 -1 O THR A 957 N ALA A 728
SHEET 1 AA3 6 LEU A1033 VAL A1037 0
SHEET 2 AA3 6 GLN A1006 VAL A1011 1 N MET A1009 O MET A1034
SHEET 3 AA3 6 THR A 979 ILE A 983 1 N LEU A 982 O ILE A1010
SHEET 4 AA3 6 PRO A1058 CYS A1061 1 O VAL A1060 N ILE A 983
SHEET 5 AA3 6 SER A1114 VAL A1118 1 O ALA A1116 N CYS A1061
SHEET 6 AA3 6 LEU A1160 VAL A1164 1 O LEU A1160 N LEU A1115
CISPEP 1 GLY A 756 PRO A 757 0 0.96
CISPEP 2 ASP A 894 PRO A 895 0 -2.58
CRYST1 102.069 123.652 74.252 90.00 105.50 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009797 0.000000 0.002717 0.00000
SCALE2 0.000000 0.008087 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013976 0.00000