HEADER VIRAL PROTEIN 14-JUL-22 8AEZ TITLE X-RAY STRUCTURE OF THE DEGLYCOSYLATED RECEPTOR BINDING DOMAIN OF ENV TITLE 2 GLYCOPROTEIN OF SIMIAN FOAMY VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP130; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENV POLYPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN FOAMY VIRUS; SOURCE 3 ORGANISM_TAXID: 11642; SOURCE 4 VARIANT: BAK74; SOURCE 5 GENE: ENV; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCHNEIDER; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: 2 KEYWDS RECEPTOR BINDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BACKOVIC REVDAT 2 15-MAR-23 8AEZ 1 JRNL REVDAT 1 22-FEB-23 8AEZ 0 JRNL AUTH I.FERNANDEZ,L.T.DYNESEN,Y.COQUIN,R.PEDERZOLI,D.BRUN,A.HAOUZ, JRNL AUTH 2 A.GESSAIN,F.A.REY,F.BUSEYNE,M.BACKOVIC JRNL TITL THE CRYSTAL STRUCTURE OF A SIMIAN FOAMY VIRUS RECEPTOR JRNL TITL 2 BINDING DOMAIN PROVIDES CLUES ABOUT ENTRY INTO HOST CELLS. JRNL REF NAT COMMUN V. 14 1262 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36878926 JRNL DOI 10.1038/S41467-023-36923-0 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1052 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2885 REMARK 3 BIN FREE R VALUE : 0.2989 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 22 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2711 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 203 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63730 REMARK 3 B22 (A**2) : 1.63730 REMARK 3 B33 (A**2) : -3.27470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.285 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.232 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.289 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.236 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3016 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4129 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1069 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 490 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3016 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 426 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2143 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.50 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.1361 -36.3317 18.3941 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: 0.0644 REMARK 3 T33: -0.0778 T12: -0.0031 REMARK 3 T13: 0.0474 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 3.0074 L22: 0.8424 REMARK 3 L33: 1.9227 L12: -1.3078 REMARK 3 L13: 1.099 L23: -0.7704 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.055 S13: -0.11 REMARK 3 S21: 0.055 S22: 0.0847 S23: -0.1245 REMARK 3 S31: -0.11 S32: -0.1245 S33: -0.1259 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124233. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS ` REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.574 REMARK 200 RESOLUTION RANGE LOW (A) : 49.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.20510 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93620 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 3.5M SODIUM FORMATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.40600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.20300 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.20300 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.40600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 420 REMARK 465 PRO A 421 REMARK 465 HIS A 422 REMARK 465 ARG A 423 REMARK 465 ARG A 424 REMARK 465 PHE A 425 REMARK 465 ASN A 426 REMARK 465 ASP A 553 REMARK 465 ASP A 554 REMARK 465 ASP A 555 REMARK 465 ASP A 556 REMARK 465 LYS A 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 476 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 525 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 300 -141.58 -109.92 REMARK 500 ARG A 308 59.41 -144.05 REMARK 500 LYS A 325 -18.98 -45.82 REMARK 500 LEU A 370 -58.00 -122.58 REMARK 500 CYS A 403 19.14 56.59 REMARK 500 LYS A 418 55.61 -166.68 REMARK 500 TRP A 435 -61.33 -95.97 REMARK 500 MET A 475 12.16 -69.13 REMARK 500 GLN A 492 150.37 75.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AIC RELATED DB: PDB REMARK 900 THE SAME PROTEIN, GLYCOSYLATED DBREF 8AEZ A 218 552 UNP K7YEW5 K7YEW5_9RETR 218 552 SEQADV 8AEZ ASP A 553 UNP K7YEW5 EXPRESSION TAG SEQADV 8AEZ ASP A 554 UNP K7YEW5 EXPRESSION TAG SEQADV 8AEZ ASP A 555 UNP K7YEW5 EXPRESSION TAG SEQADV 8AEZ ASP A 556 UNP K7YEW5 EXPRESSION TAG SEQADV 8AEZ LYS A 557 UNP K7YEW5 EXPRESSION TAG SEQRES 1 A 340 ARG ASP GLN GLU GLN TYR ILE HIS ARG LYS CYS TYR GLN SEQRES 2 A 340 GLU PHE ALA HIS CYS TYR LEU VAL LYS TYR LYS THR PRO SEQRES 3 A 340 GLN PRO TRP PRO ASN GLU GLY LEU ILE ALA ASP GLN CYS SEQRES 4 A 340 PRO LEU PRO GLY LEU ALA ASP VAL SER PHE TYR PRO TYR SEQRES 5 A 340 GLN ALA ILE TRP ASP TYR TYR ALA LYS ILE GLU ASN ILE SEQRES 6 A 340 ARG PRO ALA ASN TRP THR SER SER LYS LEU TYR GLY LYS SEQRES 7 A 340 ALA ARG MET GLY SER TYR TYR ILE PRO LYS ARG LEU ARG SEQRES 8 A 340 ASN ILE ASN ASN THR HIS ILE LEU PHE CYS SER ASP VAL SEQRES 9 A 340 LEU TYR SER LYS TRP TYR ASN LEU GLN ASN SER ILE LEU SEQRES 10 A 340 GLN ASN GLU ASN GLU LEU THR LYS ARG LEU SER ASN LEU SEQRES 11 A 340 THR ILE GLY ASN LYS LEU LYS ASN ARG ALA LEU PRO TYR SEQRES 12 A 340 GLU TRP ALA LYS GLY GLY LEU ASN ARG LEU PHE ARG ASN SEQRES 13 A 340 ILE SER VAL LEU ASP VAL CYS SER ARG PRO GLU MET VAL SEQRES 14 A 340 LEU LEU LEU ASN LYS THR TYR TYR THR PHE SER LEU TRP SEQRES 15 A 340 GLU GLY ASP CYS ASN ILE THR ARG TYR ASN VAL ASN GLU SEQRES 16 A 340 THR VAL PRO GLU CYS LYS ASP PHE PRO HIS ARG ARG PHE SEQRES 17 A 340 ASN ASP HIS PRO TYR SER CYS ARG LEU TRP ARG TYR ARG SEQRES 18 A 340 GLU GLY LYS GLU GLU VAL LYS CYS LEU THR SER ASP HIS SEQRES 19 A 340 THR ARG CYS LEU TYR TYR PRO GLU TYR SER ASN PRO GLU SEQRES 20 A 340 ALA LEU PHE ASP PHE GLY PHE LEU SER TYR MET ARG ASN SEQRES 21 A 340 PHE PRO GLY PRO GLN CYS ILE GLU SER THR SER ILE ARG SEQRES 22 A 340 GLN GLN ASP TYR GLU VAL TYR SER ILE TYR GLN GLU CYS SEQRES 23 A 340 LYS LEU ALA SER LYS THR TYR GLY ILE ASP SER VAL LEU SEQRES 24 A 340 PHE SER LEU LYS ASN PHE LEU ASN TYR THR GLY LYS PRO SEQRES 25 A 340 VAL ASN GLU MET PRO ASN ALA ARG ALA PHE VAL GLY LEU SEQRES 26 A 340 ILE ASP PRO LYS PHE PRO PRO THR TYR PRO ASP ASP ASP SEQRES 27 A 340 ASP LYS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET MAN C 7 11 HET MAN C 8 11 HET NAG A 601 14 HET NAG A 602 14 HET NAG A 603 14 HET NAG A 604 14 HET NAG A 605 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 9(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 9 HOH *31(H2 O) HELIX 1 AA1 ARG A 218 ALA A 233 1 16 HELIX 2 AA2 GLN A 270 TYR A 276 5 7 HELIX 3 AA3 THR A 288 LEU A 292 5 5 HELIX 4 AA4 PRO A 304 ARG A 308 5 5 HELIX 5 AA5 SER A 332 LEU A 347 1 16 HELIX 6 AA6 ASN A 355 LEU A 358 5 4 HELIX 7 AA7 LEU A 377 ARG A 382 1 6 HELIX 8 AA8 ARG A 382 ASN A 390 1 9 HELIX 9 AA9 GLY A 401 ILE A 405 5 5 HELIX 10 AB1 ASN A 409 VAL A 414 1 6 HELIX 11 AB2 ASP A 468 MET A 475 1 8 HELIX 12 AB3 ILE A 499 GLY A 511 1 13 HELIX 13 AB4 GLY A 511 LEU A 523 1 13 HELIX 14 AB5 PRO A 529 MET A 533 5 5 SHEET 1 AA1 4 GLU A 495 SER A 498 0 SHEET 2 AA1 4 CYS A 235 LYS A 239 -1 N LYS A 239 O GLU A 495 SHEET 3 AA1 4 HIS A 314 CYS A 318 -1 O ILE A 315 N VAL A 238 SHEET 4 AA1 4 PHE A 539 LEU A 542 -1 O VAL A 540 N LEU A 316 SHEET 1 AA2 2 GLY A 250 LEU A 251 0 SHEET 2 AA2 2 TYR A 301 TYR A 302 -1 O TYR A 301 N LEU A 251 SHEET 1 AA3 3 ILE A 282 ARG A 283 0 SHEET 2 AA3 3 CYS A 454 TYR A 457 -1 O CYS A 454 N ARG A 283 SHEET 3 AA3 3 GLU A 443 LYS A 445 -1 N LYS A 445 O LEU A 455 SHEET 1 AA4 2 THR A 348 ILE A 349 0 SHEET 2 AA4 2 LYS A 352 LEU A 353 -1 O LYS A 352 N ILE A 349 SHEET 1 AA5 2 THR A 392 TYR A 394 0 SHEET 2 AA5 2 SER A 486 SER A 488 -1 O THR A 487 N TYR A 393 SHEET 1 AA6 2 TYR A 437 ARG A 438 0 SHEET 2 AA6 2 TYR A 460 SER A 461 -1 O SER A 461 N TYR A 437 SSBOND 1 CYS A 228 CYS A 503 1555 1555 2.04 SSBOND 2 CYS A 235 CYS A 318 1555 1555 2.05 SSBOND 3 CYS A 256 CYS A 380 1555 1555 2.04 SSBOND 4 CYS A 403 CYS A 483 1555 1555 2.06 SSBOND 5 CYS A 417 CYS A 432 1555 1555 2.04 SSBOND 6 CYS A 446 CYS A 454 1555 1555 2.04 LINK ND2 ASN A 286 C1 NAG A 605 1555 1555 1.43 LINK ND2 ASN A 311 C1 NAG A 602 1555 1555 1.43 LINK ND2 ASN A 346 C1 NAG A 601 1555 1555 1.43 LINK ND2 ASN A 373 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 390 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 404 C1 NAG A 603 1555 1555 1.43 LINK ND2 ASN A 524 C1 NAG A 604 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.41 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.42 LINK O6 BMA C 3 C1 MAN C 7 1555 1555 1.41 LINK O2 MAN C 4 C1 MAN C 5 1555 1555 1.43 LINK O2 MAN C 5 C1 MAN C 6 1555 1555 1.44 LINK O3 MAN C 7 C1 MAN C 8 1555 1555 1.42 CISPEP 1 PHE A 547 PRO A 548 0 -2.26 CRYST1 99.451 99.451 120.609 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010055 0.005805 0.000000 0.00000 SCALE2 0.000000 0.011611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008291 0.00000