HEADER ONCOPROTEIN 16-JUL-22 8AFD TITLE CRYSTAL STRUCTURE OF BIT-BLOCKED KRAS-G12V-S39C IN COMPLEX WITH TITLE 2 COMPOUND 20A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS, GTPASE, G12C, COMPLEX, INHIBITOR, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BOETTCHER,D.KESSLER REVDAT 3 31-JAN-24 8AFD 1 REMARK REVDAT 2 23-NOV-22 8AFD 1 JRNL ATOM REVDAT 1 09-NOV-22 8AFD 0 JRNL AUTH J.BROKER,A.G.WATERSON,C.SMETHURST,D.KESSLER,J.BOTTCHER, JRNL AUTH 2 M.MAYER,G.GMASCHITZ,J.PHAN,A.LITTLE,J.R.ABBOTT,Q.SUN, JRNL AUTH 3 M.GMACHL,D.RUDOLPH,H.ARNHOF,K.RUMPEL,F.SAVARESE, JRNL AUTH 4 T.GERSTBERGER,N.MISCHERIKOW,M.TREU,L.HERDEIS,T.WUNBERG, JRNL AUTH 5 A.GOLLNER,H.WEINSTABL,A.MANTOULIDIS,O.KRAMER,D.B.MCCONNELL, JRNL AUTH 6 S.W FESIK JRNL TITL FRAGMENT OPTIMIZATION OF REVERSIBLE BINDING TO THE SWITCH II JRNL TITL 2 POCKET ON KRAS LEADS TO A POTENT, IN VIVO ACTIVE KRAS G12C JRNL TITL 3 INHIBITOR. JRNL REF J.MED.CHEM. V. 65 14614 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36300829 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01120 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (3-FEB-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 55.7 REMARK 3 NUMBER OF REFLECTIONS : 47945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.470 REMARK 3 FREE R VALUE TEST SET COUNT : 1663 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.76 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 920 REMARK 3 BIN R VALUE (WORKING SET) : 0.2949 REMARK 3 BIN FREE R VALUE : 0.3917 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 210 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.42230 REMARK 3 B22 (A**2) : 2.27010 REMARK 3 B33 (A**2) : -3.69230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.229 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.184 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.563 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.182 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 10734 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 19337 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3281 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1811 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5274 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 720 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8586 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.11 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.34 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE FULLY REFINED WITH ZERO REMARK 3 OCCUPANCY AT NUCLEAR POSITION. REFINEMENT NOTES. NUMBER OF REMARK 3 REFINEMENT NOTES : 1 NOTE 1 : IDEAL-DIST CONTACT TERM CONTACT REMARK 3 SETUP. ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 8AFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999882 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.633 REMARK 200 RESOLUTION RANGE LOW (A) : 74.058 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 55.7 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 8.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 1.18700 REMARK 200 R SYM FOR SHELL (I) : 1.18700 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7U90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM PCB PH 5.9, 20% PEG 1500, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.05800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.05800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.44550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.30700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.44550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.30700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.05800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.44550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.30700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.05800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.44550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.30700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 ASP B 105 REMARK 465 SER B 106 REMARK 465 GLU B 107 REMARK 465 LYS B 167 REMARK 465 GLU B 168 REMARK 465 LYS B 169 REMARK 465 GLY C 60 REMARK 465 GLN C 61 REMARK 465 GLU C 62 REMARK 465 GLU C 63 REMARK 465 TYR C 64 REMARK 465 SER C 65 REMARK 465 ALA C 66 REMARK 465 GLU C 168 REMARK 465 LYS C 169 REMARK 465 GLY D 60 REMARK 465 GLN D 61 REMARK 465 GLU D 62 REMARK 465 GLU D 63 REMARK 465 TYR D 64 REMARK 465 SER D 65 REMARK 465 ALA D 66 REMARK 465 MET D 67 REMARK 465 ARG D 68 REMARK 465 LYS D 167 REMARK 465 GLU D 168 REMARK 465 LYS D 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 71 HG1 THR B 74 1.51 REMARK 500 O TYR A 71 HG1 THR A 74 1.52 REMARK 500 O TYR D 71 HG1 THR D 74 1.52 REMARK 500 O ASP A 154 HG1 THR A 158 1.54 REMARK 500 OE1 GLU B 37 HH22 ARG B 68 1.55 REMARK 500 OE2 GLU B 37 HH12 ARG B 68 1.58 REMARK 500 HE22 GLN A 129 O HOH A 309 1.59 REMARK 500 HZ3 LYS A 16 O3B GDP A 201 1.60 REMARK 500 HZ3 LYS D 16 O3B GDP D 201 1.60 REMARK 500 OE2 GLU C 3 O HOH C 301 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 117.61 -33.72 REMARK 500 TYR A 64 52.46 -106.60 REMARK 500 LYS A 117 31.62 77.02 REMARK 500 SER A 122 48.79 -76.41 REMARK 500 ARG A 149 6.49 82.48 REMARK 500 GLU B 31 55.87 -117.99 REMARK 500 TYR B 64 54.93 -105.84 REMARK 500 LYS B 117 32.16 78.98 REMARK 500 SER B 122 48.46 -77.10 REMARK 500 ARG B 149 -0.65 82.45 REMARK 500 LYS C 117 31.55 74.85 REMARK 500 SER C 122 48.81 -77.59 REMARK 500 ARG C 149 6.50 83.02 REMARK 500 GLU D 31 32.43 -153.62 REMARK 500 LYS D 117 34.75 70.09 REMARK 500 LYS D 117 34.16 70.09 REMARK 500 SER D 122 48.34 -77.74 REMARK 500 ARG D 149 5.91 83.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 415 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH C 416 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH D 387 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O1B 92.5 REMARK 620 3 HOH A 306 O 89.0 92.6 REMARK 620 4 HOH A 315 O 89.2 86.7 178.0 REMARK 620 5 HOH A 329 O 174.8 87.1 85.9 96.0 REMARK 620 6 HOH A 334 O 98.7 164.2 98.6 82.4 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 201 O1B 99.5 REMARK 620 3 HOH B 302 O 87.3 97.6 REMARK 620 4 HOH B 308 O 173.1 85.5 87.3 REMARK 620 5 HOH B 311 O 100.7 80.1 171.9 84.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 GDP C 201 O1B 91.4 REMARK 620 3 HOH C 303 O 89.1 77.6 REMARK 620 4 HOH C 323 O 85.5 99.7 173.9 REMARK 620 5 HOH C 341 O 171.3 92.6 99.3 86.2 REMARK 620 6 HOH C 345 O 91.4 165.1 87.9 95.1 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 17 OG REMARK 620 2 GDP D 201 O2B 89.0 REMARK 620 3 HOH D 301 O 95.3 103.0 REMARK 620 4 HOH D 312 O 100.2 151.8 102.6 REMARK 620 5 HOH D 321 O 176.9 90.0 87.8 79.4 REMARK 620 6 HOH D 322 O 88.5 82.9 173.1 70.9 88.6 REMARK 620 N 1 2 3 4 5 DBREF 8AFD A 1 164 UNP P01116 RASK_HUMAN 1 164 DBREF 8AFD B 1 164 UNP P01116 RASK_HUMAN 1 164 DBREF 8AFD C 1 164 UNP P01116 RASK_HUMAN 1 164 DBREF 8AFD D 1 164 UNP P01116 RASK_HUMAN 1 164 SEQADV 8AFD GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 8AFD VAL A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8AFD CYS A 39 UNP P01116 SER 39 ENGINEERED MUTATION SEQADV 8AFD SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 8AFD GLY A 151 UNP P01116 ARG 151 ENGINEERED MUTATION SEQADV 8AFD ASP A 153 UNP P01116 GLU 153 ENGINEERED MUTATION SEQADV 8AFD LYS A 165 UNP P01116 EXPRESSION TAG SEQADV 8AFD HIS A 166 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS A 167 UNP P01116 EXPRESSION TAG SEQADV 8AFD GLU A 168 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS A 169 UNP P01116 EXPRESSION TAG SEQADV 8AFD GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 8AFD VAL B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8AFD CYS B 39 UNP P01116 SER 39 ENGINEERED MUTATION SEQADV 8AFD SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 8AFD GLY B 151 UNP P01116 ARG 151 ENGINEERED MUTATION SEQADV 8AFD ASP B 153 UNP P01116 GLU 153 ENGINEERED MUTATION SEQADV 8AFD LYS B 165 UNP P01116 EXPRESSION TAG SEQADV 8AFD HIS B 166 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS B 167 UNP P01116 EXPRESSION TAG SEQADV 8AFD GLU B 168 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS B 169 UNP P01116 EXPRESSION TAG SEQADV 8AFD GLY C 0 UNP P01116 EXPRESSION TAG SEQADV 8AFD VAL C 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8AFD CYS C 39 UNP P01116 SER 39 ENGINEERED MUTATION SEQADV 8AFD SER C 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 8AFD GLY C 151 UNP P01116 ARG 151 ENGINEERED MUTATION SEQADV 8AFD ASP C 153 UNP P01116 GLU 153 ENGINEERED MUTATION SEQADV 8AFD LYS C 165 UNP P01116 EXPRESSION TAG SEQADV 8AFD HIS C 166 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS C 167 UNP P01116 EXPRESSION TAG SEQADV 8AFD GLU C 168 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS C 169 UNP P01116 EXPRESSION TAG SEQADV 8AFD GLY D 0 UNP P01116 EXPRESSION TAG SEQADV 8AFD VAL D 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8AFD CYS D 39 UNP P01116 SER 39 ENGINEERED MUTATION SEQADV 8AFD SER D 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 8AFD GLY D 151 UNP P01116 ARG 151 ENGINEERED MUTATION SEQADV 8AFD ASP D 153 UNP P01116 GLU 153 ENGINEERED MUTATION SEQADV 8AFD LYS D 165 UNP P01116 EXPRESSION TAG SEQADV 8AFD HIS D 166 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS D 167 UNP P01116 EXPRESSION TAG SEQADV 8AFD GLU D 168 UNP P01116 EXPRESSION TAG SEQADV 8AFD LYS D 169 UNP P01116 EXPRESSION TAG SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 CYS TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 CYS TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS SEQRES 1 C 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL SEQRES 2 C 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 170 CYS TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 C 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 C 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 C 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 C 170 LYS SEQRES 1 D 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL SEQRES 2 D 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 D 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 D 170 CYS TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 D 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 D 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 D 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 D 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 D 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 D 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 D 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 D 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 D 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 D 170 LYS HET GDP A 201 40 HET 2XO A 202 18 HET MG A 203 1 HET LXU A 204 42 HET GDP B 201 40 HET MG B 202 1 HET 2XO B 203 18 HET LXU B 204 42 HET GDP C 201 40 HET MG C 202 1 HET 2XO C 203 18 HET GDP D 201 40 HET MG D 202 1 HET 2XO D 203 18 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM 2XO 1H-BENZIMIDAZOL-2-YLMETHANETHIOL HETNAM MG MAGNESIUM ION HETNAM LXU (4~{S})-4-[3-(4-AMINOPHENYL)-1,2,4-OXADIAZOL-5-YL]-2- HETNAM 2 LXU AZANYL-4-METHYL-6,7-DIHYDRO-5~{H}-1-BENZOTHIOPHENE-3- HETNAM 3 LXU CARBONITRILE FORMUL 5 GDP 4(C10 H15 N5 O11 P2) FORMUL 6 2XO 4(C8 H8 N2 S) FORMUL 7 MG 4(MG 2+) FORMUL 8 LXU 2(C18 H17 N5 O S) FORMUL 19 HOH *394(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 HIS A 166 1 16 HELIX 6 AA6 GLY B 15 ASN B 26 1 12 HELIX 7 AA7 SER B 65 THR B 74 1 10 HELIX 8 AA8 ASN B 86 LYS B 104 1 19 HELIX 9 AA9 ASP B 126 GLY B 138 1 13 HELIX 10 AB1 GLY B 151 HIS B 166 1 16 HELIX 11 AB2 GLY C 15 ASN C 26 1 12 HELIX 12 AB3 ARG C 68 GLY C 75 1 8 HELIX 13 AB4 ASN C 86 ASP C 105 1 20 HELIX 14 AB5 ASP C 126 GLY C 138 1 13 HELIX 15 AB6 GLY C 151 LYS C 167 1 17 HELIX 16 AB7 GLY D 15 ASN D 26 1 12 HELIX 17 AB8 GLN D 70 THR D 74 1 5 HELIX 18 AB9 ASN D 86 ASP D 105 1 20 HELIX 19 AC1 ASP D 126 GLY D 138 1 13 HELIX 20 AC2 GLY D 151 HIS D 166 1 16 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O LEU B 53 N LYS B 42 SHEET 3 AA2 6 THR B 2 GLY B 10 1 N TYR B 4 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 6 ASP C 38 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N VAL C 8 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 PHE C 141 GLU C 143 1 O ILE C 142 N LEU C 113 SHEET 1 AA4 6 ASP D 38 ILE D 46 0 SHEET 2 AA4 6 GLU D 49 ASP D 57 -1 O LEU D 53 N LYS D 42 SHEET 3 AA4 6 THR D 2 GLY D 10 1 N TYR D 4 O ASP D 54 SHEET 4 AA4 6 GLY D 77 ALA D 83 1 O VAL D 81 N VAL D 9 SHEET 5 AA4 6 MET D 111 ASN D 116 1 O ASN D 116 N PHE D 82 SHEET 6 AA4 6 PHE D 141 GLU D 143 1 O ILE D 142 N LEU D 113 LINK SG CYS A 39 SAH 2XO A 202 1555 1555 2.02 LINK SG CYS B 39 SAH 2XO B 203 1555 1555 2.11 LINK SG CYS C 39 SAH 2XO C 203 1555 1555 1.99 LINK SG CYS D 39 SAH 2XO D 203 1555 1555 2.01 LINK OG SER A 17 MG MG A 203 1555 1555 1.97 LINK O1B GDP A 201 MG MG A 203 1555 1555 2.18 LINK MG MG A 203 O HOH A 306 1555 1555 2.19 LINK MG MG A 203 O HOH A 315 1555 1555 2.24 LINK MG MG A 203 O HOH A 329 1555 1555 2.21 LINK MG MG A 203 O HOH A 334 1555 1555 2.21 LINK OG SER B 17 MG MG B 202 1555 1555 2.17 LINK O1B GDP B 201 MG MG B 202 1555 1555 2.11 LINK MG MG B 202 O HOH B 302 1555 1555 2.28 LINK MG MG B 202 O HOH B 308 1555 1555 2.38 LINK MG MG B 202 O HOH B 311 1555 1555 2.06 LINK OG SER C 17 MG MG C 202 1555 1555 2.23 LINK O1B GDP C 201 MG MG C 202 1555 1555 2.12 LINK MG MG C 202 O HOH C 303 1555 1555 2.41 LINK MG MG C 202 O HOH C 323 1555 1555 2.00 LINK MG MG C 202 O HOH C 341 1555 1555 2.13 LINK MG MG C 202 O HOH C 345 1555 1555 2.13 LINK OG SER D 17 MG MG D 202 1555 1555 1.94 LINK O2B GDP D 201 MG MG D 202 1555 1555 2.13 LINK MG MG D 202 O HOH D 301 1555 1555 2.10 LINK MG MG D 202 O HOH D 312 1555 1555 2.31 LINK MG MG D 202 O HOH D 321 1555 1555 2.05 LINK MG MG D 202 O HOH D 322 1555 1555 2.30 CRYST1 94.891 98.614 148.116 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006751 0.00000