data_8AFO # _entry.id 8AFO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8AFO pdb_00008afo 10.2210/pdb8afo/pdb WWPDB D_1292124047 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8AFO _pdbx_database_status.recvd_initial_deposition_date 2022-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guedez, G.' 1 ? 'Loew, C.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Faseb J.' _citation.journal_id_ASTM FAJOEC _citation.journal_id_CSD 2074 _citation.journal_id_ISSN 1530-6860 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 37 _citation.language ? _citation.page_first e22823 _citation.page_last e22823 _citation.title 'X-ray structure and function of fibronectin domains two and three of the neural cell adhesion molecule L1.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1096/fj.202201511R _citation.pdbx_database_id_PubMed 36809668 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guedez, G.' 1 0000-0002-3711-8470 primary 'Loers, G.' 2 0000-0003-1851-562X primary 'Jeffries, C.M.' 3 0000-0002-8718-7343 primary 'Kozak, S.' 4 ? primary 'Meijers, R.' 5 ? primary 'Svergun, D.I.' 6 0000-0003-0830-5696 primary 'Schachner, M.' 7 ? primary 'Low, C.' 8 0000-0003-0764-7483 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8AFO _cell.details ? _cell.formula_units_Z ? _cell.length_a 56.083 _cell.length_a_esd ? _cell.length_b 96.749 _cell.length_b_esd ? _cell.length_c 105.853 _cell.length_c_esd ? _cell.volume 574355.643 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8AFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Neural cell adhesion molecule L1' 24377.211 1 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 4 ? ? ? ? 4 water nat water 18.015 168 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name N-CAM-L1,NCAM-L1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GTAAPEKNPVDVKGEGNETTNMVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSDPFLVVSNTSTFVPYEIKVQ AVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWREGSQRKHSKRHIHKD HVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEFTFSTPEGVELHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GTAAPEKNPVDVKGEGNETTNMVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSDPFLVVSNTSTFVPYEIKVQ AVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWREGSQRKHSKRHIHKD HVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEFTFSTPEGVELHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 THR n 1 3 ALA n 1 4 ALA n 1 5 PRO n 1 6 GLU n 1 7 LYS n 1 8 ASN n 1 9 PRO n 1 10 VAL n 1 11 ASP n 1 12 VAL n 1 13 LYS n 1 14 GLY n 1 15 GLU n 1 16 GLY n 1 17 ASN n 1 18 GLU n 1 19 THR n 1 20 THR n 1 21 ASN n 1 22 MET n 1 23 VAL n 1 24 ILE n 1 25 THR n 1 26 TRP n 1 27 LYS n 1 28 PRO n 1 29 LEU n 1 30 ARG n 1 31 TRP n 1 32 MET n 1 33 ASP n 1 34 TRP n 1 35 ASN n 1 36 ALA n 1 37 PRO n 1 38 GLN n 1 39 VAL n 1 40 GLN n 1 41 TYR n 1 42 ARG n 1 43 VAL n 1 44 GLN n 1 45 TRP n 1 46 ARG n 1 47 PRO n 1 48 GLN n 1 49 GLY n 1 50 THR n 1 51 ARG n 1 52 GLY n 1 53 PRO n 1 54 TRP n 1 55 GLN n 1 56 GLU n 1 57 GLN n 1 58 ILE n 1 59 VAL n 1 60 SER n 1 61 ASP n 1 62 PRO n 1 63 PHE n 1 64 LEU n 1 65 VAL n 1 66 VAL n 1 67 SER n 1 68 ASN n 1 69 THR n 1 70 SER n 1 71 THR n 1 72 PHE n 1 73 VAL n 1 74 PRO n 1 75 TYR n 1 76 GLU n 1 77 ILE n 1 78 LYS n 1 79 VAL n 1 80 GLN n 1 81 ALA n 1 82 VAL n 1 83 ASN n 1 84 SER n 1 85 GLN n 1 86 GLY n 1 87 LYS n 1 88 GLY n 1 89 PRO n 1 90 GLU n 1 91 PRO n 1 92 GLN n 1 93 VAL n 1 94 THR n 1 95 ILE n 1 96 GLY n 1 97 TYR n 1 98 SER n 1 99 GLY n 1 100 GLU n 1 101 ASP n 1 102 TYR n 1 103 PRO n 1 104 GLN n 1 105 ALA n 1 106 ILE n 1 107 PRO n 1 108 GLU n 1 109 LEU n 1 110 GLU n 1 111 GLY n 1 112 ILE n 1 113 GLU n 1 114 ILE n 1 115 LEU n 1 116 ASN n 1 117 SER n 1 118 SER n 1 119 ALA n 1 120 VAL n 1 121 LEU n 1 122 VAL n 1 123 LYS n 1 124 TRP n 1 125 ARG n 1 126 PRO n 1 127 VAL n 1 128 ASP n 1 129 LEU n 1 130 ALA n 1 131 GLN n 1 132 VAL n 1 133 LYS n 1 134 GLY n 1 135 HIS n 1 136 LEU n 1 137 ARG n 1 138 GLY n 1 139 TYR n 1 140 ASN n 1 141 VAL n 1 142 THR n 1 143 TYR n 1 144 TRP n 1 145 ARG n 1 146 GLU n 1 147 GLY n 1 148 SER n 1 149 GLN n 1 150 ARG n 1 151 LYS n 1 152 HIS n 1 153 SER n 1 154 LYS n 1 155 ARG n 1 156 HIS n 1 157 ILE n 1 158 HIS n 1 159 LYS n 1 160 ASP n 1 161 HIS n 1 162 VAL n 1 163 VAL n 1 164 VAL n 1 165 PRO n 1 166 ALA n 1 167 ASN n 1 168 THR n 1 169 THR n 1 170 SER n 1 171 VAL n 1 172 ILE n 1 173 LEU n 1 174 SER n 1 175 GLY n 1 176 LEU n 1 177 ARG n 1 178 PRO n 1 179 TYR n 1 180 SER n 1 181 SER n 1 182 TYR n 1 183 HIS n 1 184 LEU n 1 185 GLU n 1 186 VAL n 1 187 GLN n 1 188 ALA n 1 189 PHE n 1 190 ASN n 1 191 GLY n 1 192 ARG n 1 193 GLY n 1 194 SER n 1 195 GLY n 1 196 PRO n 1 197 ALA n 1 198 SER n 1 199 GLU n 1 200 PHE n 1 201 THR n 1 202 PHE n 1 203 SER n 1 204 THR n 1 205 PRO n 1 206 GLU n 1 207 GLY n 1 208 VAL n 1 209 GLU n 1 210 LEU n 1 211 HIS n 1 212 HIS n 1 213 HIS n 1 214 HIS n 1 215 HIS n 1 216 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 216 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'L1CAM, CAML1, MIC5' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'HEK293 GnTI-' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code L1CAM_HUMAN _struct_ref.pdbx_db_accession P32004 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAPEKNPVDVKGEGNETTNMVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSDPFLVVSNTSTFVPYEIKVQAV NSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWREGSQRKHSKRHIHKDHV VVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEFTFSTPEGV ; _struct_ref.pdbx_align_begin 712 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8AFO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 208 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P32004 _struct_ref_seq.db_align_beg 712 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 917 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 712 _struct_ref_seq.pdbx_auth_seq_align_end 917 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8AFO GLY A 1 ? UNP P32004 ? ? 'expression tag' 710 1 1 8AFO THR A 2 ? UNP P32004 ? ? 'expression tag' 711 2 1 8AFO GLU A 209 ? UNP P32004 ? ? 'expression tag' 918 3 1 8AFO LEU A 210 ? UNP P32004 ? ? 'expression tag' 919 4 1 8AFO HIS A 211 ? UNP P32004 ? ? 'expression tag' 920 5 1 8AFO HIS A 212 ? UNP P32004 ? ? 'expression tag' 921 6 1 8AFO HIS A 213 ? UNP P32004 ? ? 'expression tag' 922 7 1 8AFO HIS A 214 ? UNP P32004 ? ? 'expression tag' 923 8 1 8AFO HIS A 215 ? UNP P32004 ? ? 'expression tag' 924 9 1 8AFO HIS A 216 ? UNP P32004 ? ? 'expression tag' 925 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8AFO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '150 mM sodium citrate pH 5.5, 10.6% PEG 20.000, 10 mM sodium potassium tartrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-11-11 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9762 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9762 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)' _diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY' # _reflns.B_iso_Wilson_estimate 43.43 _reflns.entry_id 8AFO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.99 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18884 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.02 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.08 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 1.99 _reflns_shell.d_res_low 2.1 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1022 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.0 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.69 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 53.62 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8AFO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.99 _refine.ls_d_res_low 48.52 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18884 _refine.ls_number_reflns_R_free 938 _refine.ls_number_reflns_R_work 17946 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.02 _refine.ls_percent_reflns_R_free 4.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1949 _refine.ls_R_factor_R_free 0.2392 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1927 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model . _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.4086 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1850 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.99 _refine_hist.d_res_low 48.52 _refine_hist.number_atoms_solvent 168 _refine_hist.number_atoms_total 1818 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1566 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0093 ? 1696 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1580 ? 2318 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0896 ? 265 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0097 ? 295 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 31.3142 ? 250 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.99 2.10 . . 88 1679 62.79 . . . 0.3281 . 0.2911 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.10 2.23 . . 140 2625 97.74 . . . 0.2990 . 0.2454 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.23 2.40 . . 134 2638 97.61 . . . 0.3088 . 0.2394 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.40 2.64 . . 142 2694 99.79 . . . 0.2563 . 0.2295 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.64 3.02 . . 142 2718 99.83 . . . 0.2558 . 0.2159 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.02 3.81 . . 143 2738 99.90 . . . 0.2747 . 0.1890 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.81 48.52 . . 149 2854 99.77 . . . 0.1926 . 0.1645 . . . . . . . . . . . # _struct.entry_id 8AFO _struct.title 'Structure of fibronectin 2 and 3 of L1CAM at 2.0 Angstrom' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8AFO _struct_keywords.text 'cell adhesion, fibronectin, glycans, L1CAM' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 30 ? TRP A 34 ? ARG A 739 TRP A 743 5 ? 5 HELX_P HELX_P2 AA2 ASP A 128 ? VAL A 132 ? ASP A 837 VAL A 841 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A ASN 17 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 726 A NAG 1001 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale2 covale one ? A ASN 68 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 777 A NAG 1002 1_555 ? ? ? ? ? ? ? 1.421 ? N-Glycosylation covale3 covale one ? A ASN 116 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 825 A NAG 1003 1_555 ? ? ? ? ? ? ? 1.418 ? N-Glycosylation covale4 covale one ? A ASN 140 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 849 B NAG 1 1_555 ? ? ? ? ? ? ? 1.422 ? N-Glycosylation covale5 covale one ? A ASN 167 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 876 A NAG 1004 1_555 ? ? ? ? ? ? ? 1.425 ? N-Glycosylation covale6 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.452 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 3 ? AA5 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 13 ? GLU A 15 ? LYS A 722 GLU A 724 AA1 2 ASN A 21 ? THR A 25 ? ASN A 730 THR A 734 AA1 3 PHE A 63 ? SER A 67 ? PHE A 772 SER A 776 AA2 1 GLN A 55 ? VAL A 59 ? GLN A 764 VAL A 768 AA2 2 GLN A 40 ? PRO A 47 ? GLN A 749 PRO A 756 AA2 3 PRO A 74 ? ASN A 83 ? PRO A 783 ASN A 792 AA2 4 GLY A 86 ? LYS A 87 ? GLY A 795 LYS A 796 AA3 1 GLN A 55 ? VAL A 59 ? GLN A 764 VAL A 768 AA3 2 GLN A 40 ? PRO A 47 ? GLN A 749 PRO A 756 AA3 3 PRO A 74 ? ASN A 83 ? PRO A 783 ASN A 792 AA3 4 THR A 94 ? TYR A 97 ? THR A 803 TYR A 806 AA4 1 LEU A 109 ? ASN A 116 ? LEU A 818 ASN A 825 AA4 2 ALA A 119 ? TRP A 124 ? ALA A 828 TRP A 833 AA4 3 SER A 170 ? LEU A 173 ? SER A 879 LEU A 882 AA5 1 ASP A 160 ? PRO A 165 ? ASP A 869 PRO A 874 AA5 2 GLY A 138 ? GLY A 147 ? GLY A 847 GLY A 856 AA5 3 SER A 181 ? PHE A 189 ? SER A 890 PHE A 898 AA5 4 SER A 198 ? SER A 203 ? SER A 907 SER A 912 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 13 ? N LYS A 722 O THR A 25 ? O THR A 734 AA1 2 3 N ILE A 24 ? N ILE A 733 O LEU A 64 ? O LEU A 773 AA2 1 2 O VAL A 59 ? O VAL A 768 N TYR A 41 ? N TYR A 750 AA2 2 3 N ARG A 42 ? N ARG A 751 O GLN A 80 ? O GLN A 789 AA2 3 4 N ASN A 83 ? N ASN A 792 O GLY A 86 ? O GLY A 795 AA3 1 2 O VAL A 59 ? O VAL A 768 N TYR A 41 ? N TYR A 750 AA3 2 3 N ARG A 42 ? N ARG A 751 O GLN A 80 ? O GLN A 789 AA3 3 4 N TYR A 75 ? N TYR A 784 O GLY A 96 ? O GLY A 805 AA4 1 2 N GLU A 110 ? N GLU A 819 O LYS A 123 ? O LYS A 832 AA4 2 3 N VAL A 122 ? N VAL A 831 O VAL A 171 ? O VAL A 880 AA5 1 2 O ASP A 160 ? O ASP A 869 N TYR A 143 ? N TYR A 852 AA5 2 3 N THR A 142 ? N THR A 851 O GLU A 185 ? O GLU A 894 AA5 3 4 N TYR A 182 ? N TYR A 891 O PHE A 202 ? O PHE A 911 # _atom_sites.entry_id 8AFO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.017831 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010336 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009447 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 710 710 GLY GLY A . n A 1 2 THR 2 711 711 THR THR A . n A 1 3 ALA 3 712 712 ALA ALA A . n A 1 4 ALA 4 713 713 ALA ALA A . n A 1 5 PRO 5 714 714 PRO PRO A . n A 1 6 GLU 6 715 715 GLU GLU A . n A 1 7 LYS 7 716 716 LYS LYS A . n A 1 8 ASN 8 717 717 ASN ASN A . n A 1 9 PRO 9 718 718 PRO PRO A . n A 1 10 VAL 10 719 719 VAL VAL A . n A 1 11 ASP 11 720 720 ASP ASP A . n A 1 12 VAL 12 721 721 VAL VAL A . n A 1 13 LYS 13 722 722 LYS LYS A . n A 1 14 GLY 14 723 723 GLY GLY A . n A 1 15 GLU 15 724 724 GLU GLU A . n A 1 16 GLY 16 725 725 GLY GLY A . n A 1 17 ASN 17 726 726 ASN ASN A . n A 1 18 GLU 18 727 727 GLU GLU A . n A 1 19 THR 19 728 728 THR THR A . n A 1 20 THR 20 729 729 THR THR A . n A 1 21 ASN 21 730 730 ASN ASN A . n A 1 22 MET 22 731 731 MET MET A . n A 1 23 VAL 23 732 732 VAL VAL A . n A 1 24 ILE 24 733 733 ILE ILE A . n A 1 25 THR 25 734 734 THR THR A . n A 1 26 TRP 26 735 735 TRP TRP A . n A 1 27 LYS 27 736 736 LYS LYS A . n A 1 28 PRO 28 737 737 PRO PRO A . n A 1 29 LEU 29 738 738 LEU LEU A . n A 1 30 ARG 30 739 739 ARG ARG A . n A 1 31 TRP 31 740 740 TRP TRP A . n A 1 32 MET 32 741 741 MET MET A . n A 1 33 ASP 33 742 742 ASP ASP A . n A 1 34 TRP 34 743 743 TRP TRP A . n A 1 35 ASN 35 744 744 ASN ASN A . n A 1 36 ALA 36 745 745 ALA ALA A . n A 1 37 PRO 37 746 746 PRO PRO A . n A 1 38 GLN 38 747 747 GLN GLN A . n A 1 39 VAL 39 748 748 VAL VAL A . n A 1 40 GLN 40 749 749 GLN GLN A . n A 1 41 TYR 41 750 750 TYR TYR A . n A 1 42 ARG 42 751 751 ARG ARG A . n A 1 43 VAL 43 752 752 VAL VAL A . n A 1 44 GLN 44 753 753 GLN GLN A . n A 1 45 TRP 45 754 754 TRP TRP A . n A 1 46 ARG 46 755 755 ARG ARG A . n A 1 47 PRO 47 756 756 PRO PRO A . n A 1 48 GLN 48 757 757 GLN GLN A . n A 1 49 GLY 49 758 758 GLY GLY A . n A 1 50 THR 50 759 759 THR THR A . n A 1 51 ARG 51 760 760 ARG ARG A . n A 1 52 GLY 52 761 761 GLY GLY A . n A 1 53 PRO 53 762 762 PRO PRO A . n A 1 54 TRP 54 763 763 TRP TRP A . n A 1 55 GLN 55 764 764 GLN GLN A . n A 1 56 GLU 56 765 765 GLU GLU A . n A 1 57 GLN 57 766 766 GLN GLN A . n A 1 58 ILE 58 767 767 ILE ILE A . n A 1 59 VAL 59 768 768 VAL VAL A . n A 1 60 SER 60 769 769 SER SER A . n A 1 61 ASP 61 770 770 ASP ASP A . n A 1 62 PRO 62 771 771 PRO PRO A . n A 1 63 PHE 63 772 772 PHE PHE A . n A 1 64 LEU 64 773 773 LEU LEU A . n A 1 65 VAL 65 774 774 VAL VAL A . n A 1 66 VAL 66 775 775 VAL VAL A . n A 1 67 SER 67 776 776 SER SER A . n A 1 68 ASN 68 777 777 ASN ASN A . n A 1 69 THR 69 778 778 THR THR A . n A 1 70 SER 70 779 779 SER SER A . n A 1 71 THR 71 780 780 THR THR A . n A 1 72 PHE 72 781 781 PHE PHE A . n A 1 73 VAL 73 782 782 VAL VAL A . n A 1 74 PRO 74 783 783 PRO PRO A . n A 1 75 TYR 75 784 784 TYR TYR A . n A 1 76 GLU 76 785 785 GLU GLU A . n A 1 77 ILE 77 786 786 ILE ILE A . n A 1 78 LYS 78 787 787 LYS LYS A . n A 1 79 VAL 79 788 788 VAL VAL A . n A 1 80 GLN 80 789 789 GLN GLN A . n A 1 81 ALA 81 790 790 ALA ALA A . n A 1 82 VAL 82 791 791 VAL VAL A . n A 1 83 ASN 83 792 792 ASN ASN A . n A 1 84 SER 84 793 793 SER SER A . n A 1 85 GLN 85 794 794 GLN GLN A . n A 1 86 GLY 86 795 795 GLY GLY A . n A 1 87 LYS 87 796 796 LYS LYS A . n A 1 88 GLY 88 797 797 GLY GLY A . n A 1 89 PRO 89 798 798 PRO PRO A . n A 1 90 GLU 90 799 799 GLU GLU A . n A 1 91 PRO 91 800 800 PRO PRO A . n A 1 92 GLN 92 801 801 GLN GLN A . n A 1 93 VAL 93 802 802 VAL VAL A . n A 1 94 THR 94 803 803 THR THR A . n A 1 95 ILE 95 804 804 ILE ILE A . n A 1 96 GLY 96 805 805 GLY GLY A . n A 1 97 TYR 97 806 806 TYR TYR A . n A 1 98 SER 98 807 807 SER SER A . n A 1 99 GLY 99 808 808 GLY GLY A . n A 1 100 GLU 100 809 809 GLU GLU A . n A 1 101 ASP 101 810 810 ASP ASP A . n A 1 102 TYR 102 811 811 TYR TYR A . n A 1 103 PRO 103 812 812 PRO PRO A . n A 1 104 GLN 104 813 813 GLN GLN A . n A 1 105 ALA 105 814 814 ALA ALA A . n A 1 106 ILE 106 815 815 ILE ILE A . n A 1 107 PRO 107 816 816 PRO PRO A . n A 1 108 GLU 108 817 817 GLU GLU A . n A 1 109 LEU 109 818 818 LEU LEU A . n A 1 110 GLU 110 819 819 GLU GLU A . n A 1 111 GLY 111 820 820 GLY GLY A . n A 1 112 ILE 112 821 821 ILE ILE A . n A 1 113 GLU 113 822 822 GLU GLU A . n A 1 114 ILE 114 823 823 ILE ILE A . n A 1 115 LEU 115 824 824 LEU LEU A . n A 1 116 ASN 116 825 825 ASN ASN A . n A 1 117 SER 117 826 826 SER SER A . n A 1 118 SER 118 827 827 SER SER A . n A 1 119 ALA 119 828 828 ALA ALA A . n A 1 120 VAL 120 829 829 VAL VAL A . n A 1 121 LEU 121 830 830 LEU LEU A . n A 1 122 VAL 122 831 831 VAL VAL A . n A 1 123 LYS 123 832 832 LYS LYS A . n A 1 124 TRP 124 833 833 TRP TRP A . n A 1 125 ARG 125 834 834 ARG ARG A . n A 1 126 PRO 126 835 835 PRO PRO A . n A 1 127 VAL 127 836 836 VAL VAL A . n A 1 128 ASP 128 837 837 ASP ASP A . n A 1 129 LEU 129 838 838 LEU LEU A . n A 1 130 ALA 130 839 839 ALA ALA A . n A 1 131 GLN 131 840 840 GLN GLN A . n A 1 132 VAL 132 841 841 VAL VAL A . n A 1 133 LYS 133 842 842 LYS LYS A . n A 1 134 GLY 134 843 843 GLY GLY A . n A 1 135 HIS 135 844 844 HIS HIS A . n A 1 136 LEU 136 845 845 LEU LEU A . n A 1 137 ARG 137 846 846 ARG ARG A . n A 1 138 GLY 138 847 847 GLY GLY A . n A 1 139 TYR 139 848 848 TYR TYR A . n A 1 140 ASN 140 849 849 ASN ASN A . n A 1 141 VAL 141 850 850 VAL VAL A . n A 1 142 THR 142 851 851 THR THR A . n A 1 143 TYR 143 852 852 TYR TYR A . n A 1 144 TRP 144 853 853 TRP TRP A . n A 1 145 ARG 145 854 854 ARG ARG A . n A 1 146 GLU 146 855 855 GLU GLU A . n A 1 147 GLY 147 856 856 GLY GLY A . n A 1 148 SER 148 857 857 SER SER A . n A 1 149 GLN 149 858 ? ? ? A . n A 1 150 ARG 150 859 ? ? ? A . n A 1 151 LYS 151 860 ? ? ? A . n A 1 152 HIS 152 861 ? ? ? A . n A 1 153 SER 153 862 ? ? ? A . n A 1 154 LYS 154 863 ? ? ? A . n A 1 155 ARG 155 864 ? ? ? A . n A 1 156 HIS 156 865 ? ? ? A . n A 1 157 ILE 157 866 866 ILE ILE A . n A 1 158 HIS 158 867 867 HIS HIS A . n A 1 159 LYS 159 868 868 LYS LYS A . n A 1 160 ASP 160 869 869 ASP ASP A . n A 1 161 HIS 161 870 870 HIS HIS A . n A 1 162 VAL 162 871 871 VAL VAL A . n A 1 163 VAL 163 872 872 VAL VAL A . n A 1 164 VAL 164 873 873 VAL VAL A . n A 1 165 PRO 165 874 874 PRO PRO A . n A 1 166 ALA 166 875 875 ALA ALA A . n A 1 167 ASN 167 876 876 ASN ASN A . n A 1 168 THR 168 877 877 THR THR A . n A 1 169 THR 169 878 878 THR THR A . n A 1 170 SER 170 879 879 SER SER A . n A 1 171 VAL 171 880 880 VAL VAL A . n A 1 172 ILE 172 881 881 ILE ILE A . n A 1 173 LEU 173 882 882 LEU LEU A . n A 1 174 SER 174 883 883 SER SER A . n A 1 175 GLY 175 884 884 GLY GLY A . n A 1 176 LEU 176 885 885 LEU LEU A . n A 1 177 ARG 177 886 886 ARG ARG A . n A 1 178 PRO 178 887 887 PRO PRO A . n A 1 179 TYR 179 888 888 TYR TYR A . n A 1 180 SER 180 889 889 SER SER A . n A 1 181 SER 181 890 890 SER SER A . n A 1 182 TYR 182 891 891 TYR TYR A . n A 1 183 HIS 183 892 892 HIS HIS A . n A 1 184 LEU 184 893 893 LEU LEU A . n A 1 185 GLU 185 894 894 GLU GLU A . n A 1 186 VAL 186 895 895 VAL VAL A . n A 1 187 GLN 187 896 896 GLN GLN A . n A 1 188 ALA 188 897 897 ALA ALA A . n A 1 189 PHE 189 898 898 PHE PHE A . n A 1 190 ASN 190 899 899 ASN ASN A . n A 1 191 GLY 191 900 900 GLY GLY A . n A 1 192 ARG 192 901 901 ARG ARG A . n A 1 193 GLY 193 902 902 GLY GLY A . n A 1 194 SER 194 903 903 SER SER A . n A 1 195 GLY 195 904 904 GLY GLY A . n A 1 196 PRO 196 905 905 PRO PRO A . n A 1 197 ALA 197 906 906 ALA ALA A . n A 1 198 SER 198 907 907 SER SER A . n A 1 199 GLU 199 908 908 GLU GLU A . n A 1 200 PHE 200 909 909 PHE PHE A . n A 1 201 THR 201 910 910 THR THR A . n A 1 202 PHE 202 911 911 PHE PHE A . n A 1 203 SER 203 912 912 SER SER A . n A 1 204 THR 204 913 913 THR THR A . n A 1 205 PRO 205 914 914 PRO PRO A . n A 1 206 GLU 206 915 915 GLU GLU A . n A 1 207 GLY 207 916 916 GLY GLY A . n A 1 208 VAL 208 917 ? ? ? A . n A 1 209 GLU 209 918 ? ? ? A . n A 1 210 LEU 210 919 ? ? ? A . n A 1 211 HIS 211 920 ? ? ? A . n A 1 212 HIS 212 921 ? ? ? A . n A 1 213 HIS 213 922 ? ? ? A . n A 1 214 HIS 214 923 ? ? ? A . n A 1 215 HIS 215 924 ? ? ? A . n A 1 216 HIS 216 925 ? ? ? A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email christian.loew@embl-hamburg.de _pdbx_contact_author.name_first Christian _pdbx_contact_author.name_last Loew _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0764-7483 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 1001 950 NAG NAG A . D 3 NAG 1 1002 953 NAG NAG A . E 3 NAG 1 1003 955 NAG NAG A . F 3 NAG 1 1004 960 NAG NAG A . G 4 HOH 1 1101 1080 HOH HOH A . G 4 HOH 2 1102 1168 HOH HOH A . G 4 HOH 3 1103 1114 HOH HOH A . G 4 HOH 4 1104 1074 HOH HOH A . G 4 HOH 5 1105 1031 HOH HOH A . G 4 HOH 6 1106 1167 HOH HOH A . G 4 HOH 7 1107 1051 HOH HOH A . G 4 HOH 8 1108 1071 HOH HOH A . G 4 HOH 9 1109 1052 HOH HOH A . G 4 HOH 10 1110 1066 HOH HOH A . G 4 HOH 11 1111 1134 HOH HOH A . G 4 HOH 12 1112 1033 HOH HOH A . G 4 HOH 13 1113 1043 HOH HOH A . G 4 HOH 14 1114 1003 HOH HOH A . G 4 HOH 15 1115 1058 HOH HOH A . G 4 HOH 16 1116 1094 HOH HOH A . G 4 HOH 17 1117 1088 HOH HOH A . G 4 HOH 18 1118 1024 HOH HOH A . G 4 HOH 19 1119 1042 HOH HOH A . G 4 HOH 20 1120 1012 HOH HOH A . G 4 HOH 21 1121 1020 HOH HOH A . G 4 HOH 22 1122 1076 HOH HOH A . G 4 HOH 23 1123 1049 HOH HOH A . G 4 HOH 24 1124 1028 HOH HOH A . G 4 HOH 25 1125 1023 HOH HOH A . G 4 HOH 26 1126 1160 HOH HOH A . G 4 HOH 27 1127 1021 HOH HOH A . G 4 HOH 28 1128 1087 HOH HOH A . G 4 HOH 29 1129 1119 HOH HOH A . G 4 HOH 30 1130 1045 HOH HOH A . G 4 HOH 31 1131 1027 HOH HOH A . G 4 HOH 32 1132 1156 HOH HOH A . G 4 HOH 33 1133 1132 HOH HOH A . G 4 HOH 34 1134 1067 HOH HOH A . G 4 HOH 35 1135 1136 HOH HOH A . G 4 HOH 36 1136 1073 HOH HOH A . G 4 HOH 37 1137 1105 HOH HOH A . G 4 HOH 38 1138 1047 HOH HOH A . G 4 HOH 39 1139 1085 HOH HOH A . G 4 HOH 40 1140 1061 HOH HOH A . G 4 HOH 41 1141 1090 HOH HOH A . G 4 HOH 42 1142 1001 HOH HOH A . G 4 HOH 43 1143 1069 HOH HOH A . G 4 HOH 44 1144 1018 HOH HOH A . G 4 HOH 45 1145 1017 HOH HOH A . G 4 HOH 46 1146 1148 HOH HOH A . G 4 HOH 47 1147 1064 HOH HOH A . G 4 HOH 48 1148 1056 HOH HOH A . G 4 HOH 49 1149 1117 HOH HOH A . G 4 HOH 50 1150 1026 HOH HOH A . G 4 HOH 51 1151 1098 HOH HOH A . G 4 HOH 52 1152 1082 HOH HOH A . G 4 HOH 53 1153 1152 HOH HOH A . G 4 HOH 54 1154 1002 HOH HOH A . G 4 HOH 55 1155 1010 HOH HOH A . G 4 HOH 56 1156 1036 HOH HOH A . G 4 HOH 57 1157 1014 HOH HOH A . G 4 HOH 58 1158 1107 HOH HOH A . G 4 HOH 59 1159 1135 HOH HOH A . G 4 HOH 60 1160 1065 HOH HOH A . G 4 HOH 61 1161 1084 HOH HOH A . G 4 HOH 62 1162 1095 HOH HOH A . G 4 HOH 63 1163 1157 HOH HOH A . G 4 HOH 64 1164 1015 HOH HOH A . G 4 HOH 65 1165 1081 HOH HOH A . G 4 HOH 66 1166 1011 HOH HOH A . G 4 HOH 67 1167 1041 HOH HOH A . G 4 HOH 68 1168 1110 HOH HOH A . G 4 HOH 69 1169 1089 HOH HOH A . G 4 HOH 70 1170 1099 HOH HOH A . G 4 HOH 71 1171 1129 HOH HOH A . G 4 HOH 72 1172 1155 HOH HOH A . G 4 HOH 73 1173 1111 HOH HOH A . G 4 HOH 74 1174 1146 HOH HOH A . G 4 HOH 75 1175 1140 HOH HOH A . G 4 HOH 76 1176 1016 HOH HOH A . G 4 HOH 77 1177 1154 HOH HOH A . G 4 HOH 78 1178 1123 HOH HOH A . G 4 HOH 79 1179 1169 HOH HOH A . G 4 HOH 80 1180 1037 HOH HOH A . G 4 HOH 81 1181 1057 HOH HOH A . G 4 HOH 82 1182 1096 HOH HOH A . G 4 HOH 83 1183 1034 HOH HOH A . G 4 HOH 84 1184 1091 HOH HOH A . G 4 HOH 85 1185 1053 HOH HOH A . G 4 HOH 86 1186 1141 HOH HOH A . G 4 HOH 87 1187 1139 HOH HOH A . G 4 HOH 88 1188 1077 HOH HOH A . G 4 HOH 89 1189 1046 HOH HOH A . G 4 HOH 90 1190 1013 HOH HOH A . G 4 HOH 91 1191 1019 HOH HOH A . G 4 HOH 92 1192 1048 HOH HOH A . G 4 HOH 93 1193 1144 HOH HOH A . G 4 HOH 94 1194 1007 HOH HOH A . G 4 HOH 95 1195 1159 HOH HOH A . G 4 HOH 96 1196 1100 HOH HOH A . G 4 HOH 97 1197 1079 HOH HOH A . G 4 HOH 98 1198 1143 HOH HOH A . G 4 HOH 99 1199 1078 HOH HOH A . G 4 HOH 100 1200 1008 HOH HOH A . G 4 HOH 101 1201 1063 HOH HOH A . G 4 HOH 102 1202 1035 HOH HOH A . G 4 HOH 103 1203 1009 HOH HOH A . G 4 HOH 104 1204 1153 HOH HOH A . G 4 HOH 105 1205 1030 HOH HOH A . G 4 HOH 106 1206 1158 HOH HOH A . G 4 HOH 107 1207 1039 HOH HOH A . G 4 HOH 108 1208 1022 HOH HOH A . G 4 HOH 109 1209 1083 HOH HOH A . G 4 HOH 110 1210 1050 HOH HOH A . G 4 HOH 111 1211 1145 HOH HOH A . G 4 HOH 112 1212 1116 HOH HOH A . G 4 HOH 113 1213 1122 HOH HOH A . G 4 HOH 114 1214 1137 HOH HOH A . G 4 HOH 115 1215 1005 HOH HOH A . G 4 HOH 116 1216 1093 HOH HOH A . G 4 HOH 117 1217 1032 HOH HOH A . G 4 HOH 118 1218 1044 HOH HOH A . G 4 HOH 119 1219 1054 HOH HOH A . G 4 HOH 120 1220 1151 HOH HOH A . G 4 HOH 121 1221 1025 HOH HOH A . G 4 HOH 122 1222 1070 HOH HOH A . G 4 HOH 123 1223 1029 HOH HOH A . G 4 HOH 124 1224 1062 HOH HOH A . G 4 HOH 125 1225 1106 HOH HOH A . G 4 HOH 126 1226 1115 HOH HOH A . G 4 HOH 127 1227 1038 HOH HOH A . G 4 HOH 128 1228 1125 HOH HOH A . G 4 HOH 129 1229 1131 HOH HOH A . G 4 HOH 130 1230 1128 HOH HOH A . G 4 HOH 131 1231 1138 HOH HOH A . G 4 HOH 132 1232 1108 HOH HOH A . G 4 HOH 133 1233 1004 HOH HOH A . G 4 HOH 134 1234 1150 HOH HOH A . G 4 HOH 135 1235 1113 HOH HOH A . G 4 HOH 136 1236 1162 HOH HOH A . G 4 HOH 137 1237 1104 HOH HOH A . G 4 HOH 138 1238 1133 HOH HOH A . G 4 HOH 139 1239 1163 HOH HOH A . G 4 HOH 140 1240 1101 HOH HOH A . G 4 HOH 141 1241 1120 HOH HOH A . G 4 HOH 142 1242 1059 HOH HOH A . G 4 HOH 143 1243 1130 HOH HOH A . G 4 HOH 144 1244 1055 HOH HOH A . G 4 HOH 145 1245 1166 HOH HOH A . G 4 HOH 146 1246 1109 HOH HOH A . G 4 HOH 147 1247 1149 HOH HOH A . G 4 HOH 148 1248 1068 HOH HOH A . G 4 HOH 149 1249 1097 HOH HOH A . G 4 HOH 150 1250 1092 HOH HOH A . G 4 HOH 151 1251 1161 HOH HOH A . G 4 HOH 152 1252 1060 HOH HOH A . G 4 HOH 153 1253 1000 HOH HOH A . G 4 HOH 154 1254 1127 HOH HOH A . G 4 HOH 155 1255 1072 HOH HOH A . G 4 HOH 156 1256 1126 HOH HOH A . G 4 HOH 157 1257 1165 HOH HOH A . G 4 HOH 158 1258 1112 HOH HOH A . G 4 HOH 159 1259 1142 HOH HOH A . G 4 HOH 160 1260 1075 HOH HOH A . G 4 HOH 161 1261 1164 HOH HOH A . G 4 HOH 162 1262 1102 HOH HOH A . G 4 HOH 163 1263 1086 HOH HOH A . G 4 HOH 164 1264 1124 HOH HOH A . G 4 HOH 165 1265 1118 HOH HOH A . G 4 HOH 166 1266 1121 HOH HOH A . G 4 HOH 167 1267 1040 HOH HOH A . G 4 HOH 168 1268 1103 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-03-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 5 x+1/2,y+1/2,z 6 x+1/2,-y+1/2,-z 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -17.7962692944 _pdbx_refine_tls.origin_y -24.4805560412 _pdbx_refine_tls.origin_z 10.7070149513 _pdbx_refine_tls.T[1][1] 0.340661729476 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.029637397916 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.065533916947 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.371814179239 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0383485172331 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.386959951046 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.298325950236 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.317934041121 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.629872725937 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.05680754634 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -1.33957831343 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.7275582332 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0338407847081 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0312575298504 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.0775165844335 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.106430709217 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0832415400272 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0254404588581 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.145760788587 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0898796172727 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 4.66116479377e-05 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 710 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 1169 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 8AFO _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A PRO 762 ? ? O A HOH 1101 ? ? 2.07 2 1 ND2 A ASN 777 ? ? O5 A NAG 1002 ? ? 2.10 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASN _pdbx_validate_rmsd_angle.auth_seq_id_1 825 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASN _pdbx_validate_rmsd_angle.auth_seq_id_2 825 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASN _pdbx_validate_rmsd_angle.auth_seq_id_3 825 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.91 _pdbx_validate_rmsd_angle.angle_target_value 110.40 _pdbx_validate_rmsd_angle.angle_deviation -12.49 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 771 ? ? -84.59 36.82 2 1 PHE A 781 ? ? 26.91 74.35 3 1 ASN A 899 ? ? -119.72 -160.30 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 1268 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.88 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 858 ? A GLN 149 2 1 Y 1 A ARG 859 ? A ARG 150 3 1 Y 1 A LYS 860 ? A LYS 151 4 1 Y 1 A HIS 861 ? A HIS 152 5 1 Y 1 A SER 862 ? A SER 153 6 1 Y 1 A LYS 863 ? A LYS 154 7 1 Y 1 A ARG 864 ? A ARG 155 8 1 Y 1 A HIS 865 ? A HIS 156 9 1 Y 1 A VAL 917 ? A VAL 208 10 1 Y 1 A GLU 918 ? A GLU 209 11 1 Y 1 A LEU 919 ? A LEU 210 12 1 Y 1 A HIS 920 ? A HIS 211 13 1 Y 1 A HIS 921 ? A HIS 212 14 1 Y 1 A HIS 922 ? A HIS 213 15 1 Y 1 A HIS 923 ? A HIS 214 16 1 Y 1 A HIS 924 ? A HIS 215 17 1 Y 1 A HIS 925 ? A HIS 216 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 956 n B 2 NAG 2 B NAG 2 A NAG 957 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'C 2 2 21' _space_group.name_Hall 'C 2c 2' _space_group.IT_number 20 _space_group.crystal_system orthorhombic _space_group.id 1 #