HEADER TRANSFERASE 18-JUL-22 8AFR TITLE PIM1 IN COMPLEX WITH 4-((6-HYDROXYBENZOFURAN-3-YL)METHYL)BENZOIC ACID TITLE 2 AND PIMTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PIMTIDE; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS SERINE KINASE, KINASE, COMPLEX, PIM1, PIM, PIM-1, INHIBITOR, KEYWDS 2 TUMORIGENISIS, CANCER, PIMTIDE, PROTO ONCOGEN, ATP, PHOSPHORYLATION, KEYWDS 3 APOPTOSIS, CELL CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.M.HOCHBAN,A.HEINE,W.E.DIEDERICH REVDAT 3 13-NOV-24 8AFR 1 REMARK REVDAT 2 07-FEB-24 8AFR 1 REMARK REVDAT 1 01-FEB-23 8AFR 0 JRNL AUTH L.HEYDER,P.M.M.HOCHBAN,C.TAYLOR,F.CHEVILLARD,C.SIEFKER, JRNL AUTH 2 C.IKING,H.BORCHARDT,A.AIGNER,G.KLEBE,A.HEINE,P.KOLB, JRNL AUTH 3 W.E.DIEDERICH JRNL TITL POSE, DUPLICATE, THEN ELABORATE: STEPS TOWARDS INCREASED JRNL TITL 2 AFFINITY FOR INHIBITORS TARGETING THE SPECIFICITY SURFACE OF JRNL TITL 3 THE PIM-1 KINASE. JRNL REF EUR.J.MED.CHEM. V. 245 14914 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36410167 JRNL DOI 10.1016/J.EJMECH.2022.114914 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 22813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2200 - 4.2900 0.99 2787 147 0.1556 0.1647 REMARK 3 2 4.2900 - 3.4100 0.99 2728 144 0.1528 0.1706 REMARK 3 3 3.4100 - 2.9800 0.99 2729 144 0.1750 0.2343 REMARK 3 4 2.9800 - 2.7100 0.98 2707 142 0.1721 0.1827 REMARK 3 5 2.7100 - 2.5100 0.99 2715 143 0.1786 0.2266 REMARK 3 6 2.5100 - 2.3600 0.99 2699 142 0.1763 0.2365 REMARK 3 7 2.3600 - 2.2500 0.98 2692 142 0.1732 0.2217 REMARK 3 8 2.2500 - 2.1500 0.95 2614 138 0.1939 0.2390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.159 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.978 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2266 REMARK 3 ANGLE : 0.626 3079 REMARK 3 CHIRALITY : 0.046 331 REMARK 3 PLANARITY : 0.005 415 REMARK 3 DIHEDRAL : 20.039 1344 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.1103 210.7660 1.9729 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.3295 REMARK 3 T33: 0.2879 T12: -0.0197 REMARK 3 T13: -0.0138 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.1240 L22: 1.2319 REMARK 3 L33: 2.3594 L12: -0.1598 REMARK 3 L13: 0.1062 L23: 0.4941 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: -0.0208 S13: -0.0400 REMARK 3 S21: 0.1539 S22: 0.0334 S23: 0.0144 REMARK 3 S31: 0.0042 S32: -0.1385 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.8354 202.0784 13.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.6464 T22: 0.5349 REMARK 3 T33: 0.4460 T12: 0.1103 REMARK 3 T13: -0.1296 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.4287 L22: 0.1258 REMARK 3 L33: 0.2478 L12: 0.2161 REMARK 3 L13: -0.3040 L23: -0.1603 REMARK 3 S TENSOR REMARK 3 S11: 0.4519 S12: -0.2911 S13: -0.2969 REMARK 3 S21: 0.5751 S22: -0.1618 S23: -0.1005 REMARK 3 S31: 0.4303 S32: 0.0617 S33: 0.0199 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 124.1260 198.4751 -4.7156 REMARK 3 T TENSOR REMARK 3 T11: 0.3535 T22: 0.6639 REMARK 3 T33: 0.5470 T12: 0.0769 REMARK 3 T13: -0.0345 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.3644 L22: 0.7006 REMARK 3 L33: 1.3526 L12: 0.2868 REMARK 3 L13: -0.0355 L23: 0.3099 REMARK 3 S TENSOR REMARK 3 S11: 0.3633 S12: 0.2553 S13: -0.0674 REMARK 3 S21: -0.2273 S22: -0.3346 S23: -0.1512 REMARK 3 S31: 0.6139 S32: 0.7262 S33: 0.0421 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.2870 199.4592 -11.7051 REMARK 3 T TENSOR REMARK 3 T11: 0.3754 T22: 0.4652 REMARK 3 T33: 0.4760 T12: 0.0595 REMARK 3 T13: 0.0019 T23: -0.1305 REMARK 3 L TENSOR REMARK 3 L11: 0.2515 L22: 0.1721 REMARK 3 L33: 0.1097 L12: 0.0504 REMARK 3 L13: 0.1379 L23: -0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: 0.5606 S13: 0.1169 REMARK 3 S21: -0.4936 S22: 0.0816 S23: 0.0974 REMARK 3 S31: -0.0783 S32: 0.2797 S33: 0.0118 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 115.8297 204.5968 -0.1557 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.5260 REMARK 3 T33: 0.4092 T12: 0.0403 REMARK 3 T13: -0.0596 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 0.7853 L22: 0.6154 REMARK 3 L33: 1.0869 L12: -0.5267 REMARK 3 L13: -0.3728 L23: -0.2418 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: -0.2705 S13: 0.0409 REMARK 3 S21: 0.0179 S22: 0.1248 S23: -0.3466 REMARK 3 S31: 0.0387 S32: 0.7237 S33: 0.0771 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292120081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 - 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : SAGITALLY BENDED SI111-CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.02 REMARK 200 DATA SCALING SOFTWARE : XDS 1.02 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NDT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-PROPANE (PH7.0), 10 % REMARK 280 ETHYLENE GLYCOL, 0.3% DMSO, 20% PEG3350, 200 MM LICL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.50000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.75000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.12500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.37500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 LEU A 12 REMARK 465 ARG A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 CYS A 17 REMARK 465 ASN A 18 REMARK 465 ASP A 19 REMARK 465 LEU A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 PHE A 49 REMARK 465 GLY A 50 REMARK 465 PRO A 81 REMARK 465 ASN A 82 REMARK 465 GLY A 83 REMARK 465 SER A 306 REMARK 465 PRO A 307 REMARK 465 GLY A 308 REMARK 465 PRO A 309 REMARK 465 SER A 310 REMARK 465 ALA C 1 REMARK 465 PRO C 11 REMARK 465 PRO C 12 REMARK 465 THR C 13 REMARK 465 ALA C 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 33 CG CD REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 VAL A 40 CG1 CG2 REMARK 470 SER A 54 OG REMARK 470 ILE A 56 CG1 CG2 CD1 REMARK 470 VAL A 58 CG1 REMARK 470 SER A 59 OG REMARK 470 ASN A 61 OD1 ND2 REMARK 470 GLU A 70 OE2 REMARK 470 ASP A 72 CG OD1 OD2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 SER A 75 OG REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 THR A 84 OG1 CG2 REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CE NZ REMARK 470 SER A 98 OG REMARK 470 SER A 101 OG REMARK 470 ARG A 105 CZ NH1 NH2 REMARK 470 ASP A 114 OD1 REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 ARG A 179 CZ NH1 NH2 REMARK 470 ARG A 214 NH1 NH2 REMARK 470 ARG A 217 CD NE CZ NH1 NH2 REMARK 470 GLU A 246 OE2 REMARK 470 ILE A 249 CD1 REMARK 470 GLN A 252 OE1 NE2 REMARK 470 GLU A 262 OE1 OE2 REMARK 470 ARG A 274 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 295 CD1 REMARK 470 GLN A 297 CD OE1 NE2 REMARK 470 LYS C 3 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 16.61 -155.18 REMARK 500 SER A 98 -159.83 -171.63 REMARK 500 ASP A 167 45.10 -147.97 REMARK 500 ASP A 186 83.44 55.61 REMARK 500 SER C 9 -95.32 -104.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QB2 RELATED DB: PDB REMARK 900 7QB2 CONTAINS THE SAME PROTEIN COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 7QFM RELATED DB: PDB REMARK 900 7QFM CONTAINS THE SAME PROTEIN COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 7Z6U RELATED DB: PDB REMARK 900 7Z6U CONTAINS THE SAME PROTEIN COMPLEXED WITH ANOTHER INHIBITOR DBREF 8AFR A 1 310 UNP P11309 PIM1_HUMAN 1 312 DBREF 8AFR C 1 14 PDB 8AFR 8AFR 1 14 SEQADV 8AFR SER A 0 UNP P11309 EXPRESSION TAG SEQADV 8AFR A UNP P11309 GLY 47 DELETION SEQADV 8AFR A UNP P11309 GLY 48 DELETION SEQADV 8AFR GLY A 250 UNP P11309 ARG 250 ENGINEERED MUTATION SEQADV 8AFR A UNP P11309 SER 306 DELETION SEQADV 8AFR A UNP P11309 LEU 307 DELETION SEQRES 1 A 309 SER MET LEU LEU SER LYS ILE ASN SER LEU ALA HIS LEU SEQRES 2 A 309 ARG ALA ALA PRO CYS ASN ASP LEU HIS ALA THR LYS LEU SEQRES 3 A 309 ALA PRO GLY LYS GLU LYS GLU PRO LEU GLU SER GLN TYR SEQRES 4 A 309 GLN VAL GLY PRO LEU LEU GLY SER PHE GLY SER VAL TYR SEQRES 5 A 309 SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA ILE SEQRES 6 A 309 LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY GLU SEQRES 7 A 309 LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL LEU SEQRES 8 A 309 LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE ARG SEQRES 9 A 309 LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL LEU SEQRES 10 A 309 ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE ASP SEQRES 11 A 309 PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU ALA SEQRES 12 A 309 ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG HIS SEQRES 13 A 309 CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS ASP SEQRES 14 A 309 GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU LYS SEQRES 15 A 309 LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP THR SEQRES 16 A 309 VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO SEQRES 17 A 309 PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG SER SEQRES 18 A 309 ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET SEQRES 19 A 309 VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU ILE SEQRES 20 A 309 ILE GLY GLY GLN VAL PHE PHE ARG GLN ARG VAL SER SEP SEQRES 21 A 309 GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU ARG SEQRES 22 A 309 PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN HIS SEQRES 23 A 309 PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR ALA SEQRES 24 A 309 GLU ILE HIS LEU HIS SER PRO GLY PRO SER SEQRES 1 C 14 ALA ARG LYS ARG ARG ARG HIS PRO SER GLY PRO PRO THR SEQRES 2 C 14 ALA MODRES 8AFR SEP A 261 SER MODIFIED RESIDUE HET SEP A 261 10 HET M0F A 401 20 HETNAM SEP PHOSPHOSERINE HETNAM M0F 4-((6-HYDROXYBENZOFURAN-3-YL)METHYL)BENZOIC ACID HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 M0F C16 H12 O4 FORMUL 4 HOH *111(H2 O) HELIX 1 AA1 PRO A 33 GLN A 37 1 5 HELIX 2 AA2 ASP A 72 ILE A 74 5 3 HELIX 3 AA3 MET A 88 SER A 97 1 10 HELIX 4 AA4 LEU A 129 GLY A 137 1 9 HELIX 5 AA5 GLN A 140 CYS A 161 1 22 HELIX 6 AA6 LYS A 169 GLU A 171 5 3 HELIX 7 AA7 THR A 204 SER A 208 5 5 HELIX 8 AA8 PRO A 209 HIS A 216 1 8 HELIX 9 AA9 HIS A 219 GLY A 238 1 20 HELIX 10 AB1 HIS A 244 GLY A 251 1 8 HELIX 11 AB2 SER A 260 LEU A 271 1 12 HELIX 12 AB3 ARG A 274 ARG A 278 5 5 HELIX 13 AB4 THR A 280 ASN A 286 1 7 HELIX 14 AB5 HIS A 287 GLN A 291 5 5 HELIX 15 AB6 LEU A 295 LEU A 304 1 10 SHEET 1 AA1 5 TYR A 38 LEU A 43 0 SHEET 2 AA1 5 VAL A 52 ARG A 57 -1 O SER A 54 N GLY A 41 SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O VAL A 64 N GLY A 55 SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67 SHEET 5 AA1 5 LEU A 106 GLU A 111 -1 N LEU A 107 O ILE A 119 SHEET 1 AA2 2 TRP A 77 GLY A 78 0 SHEET 2 AA2 2 VAL A 86 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 AA3 3 VAL A 126 ASP A 128 0 SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 AA4 2 VAL A 163 LEU A 164 0 SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 LINK C SER A 260 N SEP A 261 1555 1555 1.33 LINK C SEP A 261 N GLU A 262 1555 1555 1.33 CISPEP 1 GLU A 124 PRO A 125 0 -2.08 CRYST1 96.437 96.437 80.250 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010369 0.005987 0.000000 0.00000 SCALE2 0.000000 0.011974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012461 0.00000