HEADER HYDROLASE 20-JUL-22 8AGG TITLE STRUCTURE OF THE LEGIONELLA PHOSPHOCHOLINE HYDROLASE LEM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOCHOLINE HYDROLASE LEM3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEPHOSPHOCHOLINASE LEM3; COMPND 5 EC: 3.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 5 GENE: LEM3, LPG0696; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL KEYWDS BACTERIAL EFFECTOR, DEPHOSPHOCHOLINASE, LEGIONELLA PNEUMOPHILA, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KASPERS,A.ITZEN,V.POGENBERG REVDAT 3 01-MAY-24 8AGG 1 REMARK REVDAT 2 03-MAY-23 8AGG 1 JRNL REVDAT 1 12-APR-23 8AGG 0 JRNL AUTH M.S.KASPERS,V.POGENBERG,C.PETT,S.ERNST,F.ECKER,P.OCHTROP, JRNL AUTH 2 M.GROLL,C.HEDBERG,A.ITZEN JRNL TITL DEPHOSPHOCHOLINATION BY LEGIONELLA EFFECTOR LEM3 FUNCTIONS JRNL TITL 2 THROUGH REMODELLING OF THE SWITCH II REGION OF RAB1B. JRNL REF NAT COMMUN V. 14 2245 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37076474 JRNL DOI 10.1038/S41467-023-37621-7 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 8675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.5400 - 5.1900 0.98 2900 134 0.2523 0.2515 REMARK 3 2 5.1900 - 4.1200 0.99 2697 145 0.2682 0.3507 REMARK 3 3 4.1200 - 3.6000 0.99 2669 130 0.2929 0.3720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.565 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 171.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 3900 REMARK 3 ANGLE : 0.376 5263 REMARK 3 CHIRALITY : 0.038 613 REMARK 3 PLANARITY : 0.002 676 REMARK 3 DIHEDRAL : 11.406 1443 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2922 -27.0372 -1.7333 REMARK 3 T TENSOR REMARK 3 T11: 1.2948 T22: 1.4755 REMARK 3 T33: 1.6654 T12: -0.0190 REMARK 3 T13: 0.0890 T23: 0.5002 REMARK 3 L TENSOR REMARK 3 L11: 1.2878 L22: 3.9288 REMARK 3 L33: 4.0615 L12: -0.8802 REMARK 3 L13: 1.8012 L23: -2.3429 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: 0.2408 S13: -0.3298 REMARK 3 S21: -0.0002 S22: 0.2945 S23: -0.0299 REMARK 3 S31: -0.2221 S32: 0.1144 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 469 THROUGH 508 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2015 -65.8716 25.3958 REMARK 3 T TENSOR REMARK 3 T11: 1.9791 T22: 1.5608 REMARK 3 T33: 2.9195 T12: 0.2028 REMARK 3 T13: 0.1331 T23: 0.9048 REMARK 3 L TENSOR REMARK 3 L11: 0.6840 L22: 0.5302 REMARK 3 L33: 0.4893 L12: 0.0592 REMARK 3 L13: -0.5474 L23: -0.2893 REMARK 3 S TENSOR REMARK 3 S11: -0.4002 S12: 0.3716 S13: -0.9948 REMARK 3 S21: 0.1515 S22: -0.0874 S23: 0.4275 REMARK 3 S31: 0.9966 S32: -0.4443 S33: -0.1592 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 509 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4127 -70.3611 28.8404 REMARK 3 T TENSOR REMARK 3 T11: 1.9861 T22: 1.5039 REMARK 3 T33: 2.3571 T12: 0.1463 REMARK 3 T13: -0.1069 T23: 0.5620 REMARK 3 L TENSOR REMARK 3 L11: 0.4623 L22: 0.0654 REMARK 3 L33: 0.1739 L12: 0.0852 REMARK 3 L13: 0.1518 L23: -0.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.3345 S12: 0.4965 S13: -0.9891 REMARK 3 S21: -0.0073 S22: -0.5951 S23: 0.4145 REMARK 3 S31: 1.2648 S32: 0.1581 S33: -0.0082 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8684 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 67.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 24.60 REMARK 200 R MERGE (I) : 0.17090 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 24.60 REMARK 200 R MERGE FOR SHELL (I) : 1.07600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: LEM3_APO REMARK 200 REMARK 200 REMARK: HEXAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES 0.1M PH 5, PEG6000 5%, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.33800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 254.67600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 191.00700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 318.34500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.66900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 127.33800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 254.67600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 318.34500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 191.00700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 63.66900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 TYR A 5 REMARK 465 ILE A 6 REMARK 465 ILE A 7 REMARK 465 ASN A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 LYS A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 PHE A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 CYS A 17 REMARK 465 ASN A 18 REMARK 465 PRO A 148 REMARK 465 LYS A 149 REMARK 465 ALA A 150 REMARK 465 SER A 151 REMARK 465 ASP A 152 REMARK 465 LYS A 153 REMARK 465 LYS A 154 REMARK 465 GLN A 155 REMARK 465 THR A 156 REMARK 465 ALA A 157 REMARK 465 PRO A 158 REMARK 465 LYS A 159 REMARK 465 THR A 160 REMARK 465 LEU A 161 REMARK 465 GLN A 162 REMARK 465 HIS A 163 REMARK 465 ALA A 234 REMARK 465 LEU A 235 REMARK 465 LEU A 236 REMARK 465 VAL A 237 REMARK 465 ARG A 238 REMARK 465 GLN A 239 REMARK 465 THR A 240 REMARK 465 LEU A 241 REMARK 465 GLY A 365 REMARK 465 LEU A 366 REMARK 465 SER A 367 REMARK 465 ASP A 368 REMARK 465 GLY A 369 REMARK 465 ILE A 370 REMARK 465 THR A 371 REMARK 465 TYR A 372 REMARK 465 PHE A 373 REMARK 465 GLU A 374 REMARK 465 THR A 487 REMARK 465 GLY A 488 REMARK 465 LEU A 489 REMARK 465 ASP A 490 REMARK 465 SER A 491 REMARK 465 LYS A 492 REMARK 465 LYS A 493 REMARK 465 GLU A 527 REMARK 465 ILE A 528 REMARK 465 LYS A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 THR A 532 REMARK 465 GLY A 533 REMARK 465 VAL A 534 REMARK 465 PHE A 535 REMARK 465 GLN A 536 REMARK 465 THR A 537 REMARK 465 LEU A 538 REMARK 465 PHE A 539 REMARK 465 GLY A 540 REMARK 465 GLU A 541 REMARK 465 ASN A 542 REMARK 465 GLN A 543 REMARK 465 LYS A 566 REMARK 465 ASN A 567 REMARK 465 GLU A 568 REMARK 465 LEU A 569 REMARK 465 LYS A 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 19 CG SD CE REMARK 470 PHE A 46 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 TYR A 212 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 GLN A 327 CG CD OE1 NE2 REMARK 470 HIS A 385 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 424 CG CD1 CD2 REMARK 470 ASN A 494 CG OD1 ND2 REMARK 470 TYR A 495 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 GLU A 562 CG CD OE1 OE2 REMARK 470 GLU A 564 CG CD OE1 OE2 REMARK 470 ASN A 565 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 -169.78 -166.32 REMARK 500 ASP A 91 -151.61 -81.83 REMARK 500 ALA A 166 117.56 -164.03 REMARK 500 ASP A 197 -162.26 -115.91 REMARK 500 THR A 217 70.33 -112.50 REMARK 500 VAL A 256 -71.13 -102.74 REMARK 500 THR A 268 -146.76 -94.71 REMARK 500 ASP A 270 15.08 -148.16 REMARK 500 LEU A 288 18.30 -141.44 REMARK 500 TYR A 293 73.46 55.54 REMARK 500 SER A 334 71.56 54.50 REMARK 500 LYS A 336 -30.89 -131.52 REMARK 500 HIS A 350 58.71 -92.68 REMARK 500 GLU A 460 47.17 -102.75 REMARK 500 TYR A 495 -115.98 -107.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD1 REMARK 620 2 ASP A 105 OD2 60.3 REMARK 620 3 ASP A 254 OD1 128.7 68.4 REMARK 620 4 ASP A 254 OD2 113.4 85.8 62.1 REMARK 620 5 ASP A 394 OD1 116.3 133.2 97.0 127.7 REMARK 620 6 ASP A 394 OD2 142.7 152.2 87.1 70.7 60.2 REMARK 620 N 1 2 3 4 5 DBREF 8AGG A 1 570 UNP Q5ZXN5 LEM3_LEGPH 1 570 SEQADV 8AGG GLY A -1 UNP Q5ZXN5 EXPRESSION TAG SEQADV 8AGG HIS A 0 UNP Q5ZXN5 EXPRESSION TAG SEQRES 1 A 572 GLY HIS MET LYS LEU ARG TYR ILE ILE ASN GLU ASN LYS SEQRES 2 A 572 LEU VAL PHE THR SER CYS ASN MET ARG ASP LYS ILE ILE SEQRES 3 A 572 THR GLY LYS LYS ILE ILE PHE SER GLN SER VAL ALA LYS SEQRES 4 A 572 ASP GLN THR LYS ASN LEU SER SER PHE LEU SER GLU ARG SEQRES 5 A 572 PHE TYR SER VAL ASN GLN SER HIS ASN HIS SER ILE ILE SEQRES 6 A 572 ILE GLY SER SER LEU SER HIS GLN GLU ASN ASP ILE GLU SEQRES 7 A 572 HIS ASP THR ILE LEU ASP THR SER GLY VAL LEU VAL THR SEQRES 8 A 572 THR ASP THR ASN GLY ILE VAL ASN GLY ALA ARG VAL ALA SEQRES 9 A 572 ILE THR ASP GLY LEU GLY GLY GLY ASN GLY ASP GLN GLU SEQRES 10 A 572 GLU ASP ASP GLU ILE TYR ARG VAL SER HIS SER SER CYS SEQRES 11 A 572 GLU ASN PHE LEU ASN CYS ASP GLN ASN ILE ASP THR THR SEQRES 12 A 572 LEU SER LEU ILE THR GLN PRO LYS ALA SER ASP LYS LYS SEQRES 13 A 572 GLN THR ALA PRO LYS THR LEU GLN HIS THR GLU ALA SER SEQRES 14 A 572 MET ALA ALA PHE ILE TYR GLN ASN HIS PRO GLY LYS GLY SEQRES 15 A 572 TYR ILE GLY GLU PHE ALA ASN ILE GLY ASP GLY LEU ILE SEQRES 16 A 572 ILE ILE LEU ASP LYS ARG PHE LYS ILE LYS HIS MET VAL SEQRES 17 A 572 SER ALA CYS HIS ILE TYR ARG GLY PHE GLY THR TRP THR SEQRES 18 A 572 PRO PRO SER LEU GLN ALA LEU ALA THR THR ALA ASN LYS SEQRES 19 A 572 ASP ALA LEU LEU VAL ARG GLN THR LEU LYS LEU ALA GLU SEQRES 20 A 572 GLY ASP ILE ILE ILE SER MET THR ASP GLY VAL TRP GLY SEQRES 21 A 572 GLU LEU LYS THR SER LEU ILE ALA GLN THR ASN ASP ARG SEQRES 22 A 572 ARG ASP ILE GLY VAL ASP LYS GLU TYR PHE LYS THR LEU SEQRES 23 A 572 PHE ASP GLU LEU THR ASP ALA PRO TYR PRO SER SER PHE SEQRES 24 A 572 ASP ILE ALA ARG ILE ILE THR GLN ARG ALA MET SER ARG SEQRES 25 A 572 SER LEU GLU ARG ARG LYS THR LEU ILE LYS LEU ILE ASN SEQRES 26 A 572 GLU ILE GLU GLN GLN HIS PHE HIS GLU LYS SER VAL LYS SEQRES 27 A 572 THR ILE ASN GLU VAL LEU GLU TYR PHE ILE LYS THR GLY SEQRES 28 A 572 HIS VAL GLU THR ALA GLN THR LEU LYS ALA ILE LEU PHE SEQRES 29 A 572 GLU ASP GLY LEU SER ASP GLY ILE THR TYR PHE GLU ASN SEQRES 30 A 572 ILE GLU ILE PRO LEU GLU MET VAL MET HIS ASP LEU LYS SEQRES 31 A 572 SER ARG THR VAL GLY ASP CYS SER THR ILE ASN VAL THR SEQRES 32 A 572 ARG ILE PRO TYR HIS LEU ASP GLU LEU ILE ARG GLY PHE SEQRES 33 A 572 ILE ASN TYR PRO GLU LYS HIS GLN ILE LEU ALA PRO LEU SEQRES 34 A 572 PHE LYS ALA ARG VAL LYS SER GLU ALA ASP LEU GLU GLU SEQRES 35 A 572 ALA PHE HIS ARG LEU SER LEU GLU MET VAL GLN PRO GLU SEQRES 36 A 572 ILE GLU CYS PRO ILE SER GLU THR HIS PHE GLU ARG ALA SEQRES 37 A 572 PHE LYS LYS GLU THR LEU ASP LYS THR GLN ALA VAL LEU SEQRES 38 A 572 THR HIS TYR PHE ARG ILE SER THR GLY LEU ASP SER LYS SEQRES 39 A 572 LYS ASN TYR GLN GLU ARG LEU ASN ASP LEU SER ALA TYR SEQRES 40 A 572 LEU SER LYS GLU SER SER LEU GLU LYS ASN ASP ILE LYS SEQRES 41 A 572 LEU LEU LEU SER MET LEU ASP SER GLU ILE LYS PRO LYS SEQRES 42 A 572 THR GLY VAL PHE GLN THR LEU PHE GLY GLU ASN GLN ASN SEQRES 43 A 572 LYS LEU TYR LYS ALA PHE HIS LYS LYS ILE GLU LEU GLN SEQRES 44 A 572 LEU LEU ASP SER GLU ILE GLU ASN LYS ASN GLU LEU LYS HET MG A 601 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ HELIX 1 AA1 SER A 34 GLN A 39 1 6 HELIX 2 AA2 ASN A 42 ARG A 50 1 9 HELIX 3 AA3 ASP A 113 CYS A 134 1 22 HELIX 4 AA4 ASN A 137 THR A 146 1 10 HELIX 5 AA5 SER A 222 ALA A 227 5 6 HELIX 6 AA6 THR A 253 GLY A 258 1 6 HELIX 7 AA7 ASP A 277 LEU A 284 1 8 HELIX 8 AA8 PHE A 285 THR A 289 5 5 HELIX 9 AA9 SER A 295 GLN A 327 1 33 HELIX 10 AB1 THR A 337 GLY A 349 1 13 HELIX 11 AB2 HIS A 350 ASP A 364 1 15 HELIX 12 AB3 PRO A 379 SER A 389 1 11 HELIX 13 AB4 TYR A 405 TYR A 417 1 13 HELIX 14 AB5 PRO A 418 HIS A 421 5 4 HELIX 15 AB6 LEU A 424 VAL A 432 1 9 HELIX 16 AB7 SER A 434 LEU A 447 1 14 HELIX 17 AB8 LYS A 468 SER A 486 1 19 HELIX 18 AB9 TYR A 495 GLU A 509 1 15 HELIX 19 AC1 GLU A 513 ASN A 515 5 3 HELIX 20 AC2 ASP A 516 SER A 526 1 11 HELIX 21 AC3 LYS A 545 GLU A 564 1 20 SHEET 1 AA1 5 LYS A 22 ILE A 24 0 SHEET 2 AA1 5 ASP A 82 THR A 90 -1 O VAL A 86 N ILE A 23 SHEET 3 AA1 5 VAL A 96 GLY A 106 -1 O ALA A 102 N GLY A 85 SHEET 4 AA1 5 ALA A 166 HIS A 176 -1 O ALA A 169 N ILE A 103 SHEET 5 AA1 5 GLY A 180 ILE A 188 -1 O ILE A 182 N GLN A 174 SHEET 1 AA2 2 ILE A 29 SER A 32 0 SHEET 2 AA2 2 ILE A 75 THR A 79 -1 O ILE A 75 N SER A 32 SHEET 1 AA3 7 ILE A 202 VAL A 206 0 SHEET 2 AA3 7 LEU A 192 LEU A 196 -1 N ILE A 195 O LYS A 203 SHEET 3 AA3 7 ILE A 248 MET A 252 -1 O ILE A 248 N LEU A 196 SHEET 4 AA3 7 CYS A 395 ARG A 402 -1 O THR A 401 N ILE A 249 SHEET 5 AA3 7 HIS A 60 SER A 66 -1 N GLY A 65 O SER A 396 SHEET 6 AA3 7 PHE A 51 SER A 57 -1 N VAL A 54 O ILE A 62 SHEET 7 AA3 7 GLU A 455 PRO A 457 -1 O CYS A 456 N SER A 53 SHEET 1 AA4 2 ILE A 211 TYR A 212 0 SHEET 2 AA4 2 TRP A 218 THR A 219 -1 O THR A 219 N ILE A 211 SHEET 1 AA5 2 THR A 262 GLN A 267 0 SHEET 2 AA5 2 ARG A 272 VAL A 276 -1 O ASP A 273 N ALA A 266 SHEET 1 AA6 2 MET A 449 VAL A 450 0 SHEET 2 AA6 2 GLU A 464 ARG A 465 -1 O GLU A 464 N VAL A 450 LINK OD1 ASP A 105 MG MG A 601 1555 1555 2.23 LINK OD2 ASP A 105 MG MG A 601 1555 1555 2.11 LINK OD1 ASP A 254 MG MG A 601 1555 1555 2.13 LINK OD2 ASP A 254 MG MG A 601 1555 1555 2.12 LINK OD1 ASP A 394 MG MG A 601 1555 1555 2.17 LINK OD2 ASP A 394 MG MG A 601 1555 1555 2.18 CRYST1 78.022 78.022 382.014 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012817 0.007400 0.000000 0.00000 SCALE2 0.000000 0.014800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002618 0.00000