HEADER CHAPERONE 20-JUL-22 8AGL TITLE STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN TITLE 2 (HSP90-NTD) VARIANT K112R IN COMPLEX WITH JMC31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN HSP 90-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEAT SHOCK 86 KDA,HSP86,LIPOPOLYSACCHARIDE-ASSOCIATED COMPND 5 PROTEIN 2,LPS-ASSOCIATED PROTEIN 2,RENAL CARCINOMA ANTIGEN NY-REN-38; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSP90AA1, HSP90A, HSPC1, HSPCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS HSP90, NTD, K112R, 1, 2, 3-TRIAZOLE-BASED COMPOUND, COMPLEX, KEYWDS 2 CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR G.TASSONE,C.POZZI,M.MAZZORANA,S.MANGANI,S.MARAMAI REVDAT 2 31-JAN-24 8AGL 1 REMARK REVDAT 1 07-SEP-22 8AGL 0 JRNL AUTH G.TASSONE,M.MAZZORANA,S.MANGANI,E.PETRICCI,E.CINI, JRNL AUTH 2 G.GIANNINI,C.POZZI,S.MARAMAI JRNL TITL STRUCTURAL CHARACTERIZATION OF HUMAN HEAT SHOCK PROTEIN 90 JRNL TITL 2 N-TERMINAL DOMAIN AND ITS VARIANTS K112R AND K112A IN JRNL TITL 3 COMPLEX WITH A POTENT 1,2,3-TRIAZOLE-BASED INHIBITOR. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36012721 JRNL DOI 10.3390/IJMS23169458 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1393 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2048 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.246 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3325 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4503 ; 1.566 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 7.101 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;34.042 ;23.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;17.760 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;23.877 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2465 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8AGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124438. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29864 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 210.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6GQ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% WT/VOL PEG-4000, 200 MM MAGNESIUM REMARK 280 CHLORIDE AND 100 MM TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.26300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.43200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.43200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 157.89450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.43200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.43200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.63150 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.43200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.43200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 157.89450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.43200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.43200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.63150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.26300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 ASP A 9 REMARK 465 GLN A 10 REMARK 465 PRO A 11 REMARK 465 MET A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 ARG A 226 REMARK 465 ASP A 227 REMARK 465 LYS A 228 REMARK 465 GLU A 229 REMARK 465 VAL A 230 REMARK 465 SER A 231 REMARK 465 ASP A 232 REMARK 465 ASP A 233 REMARK 465 GLU A 234 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 GLN B 6 REMARK 465 THR B 7 REMARK 465 GLN B 8 REMARK 465 ASP B 9 REMARK 465 GLN B 10 REMARK 465 PRO B 11 REMARK 465 MET B 12 REMARK 465 GLU B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 GLU B 223 REMARK 465 LYS B 224 REMARK 465 GLU B 225 REMARK 465 ARG B 226 REMARK 465 ASP B 227 REMARK 465 LYS B 228 REMARK 465 GLU B 229 REMARK 465 VAL B 230 REMARK 465 SER B 231 REMARK 465 ASP B 232 REMARK 465 ASP B 233 REMARK 465 GLU B 234 REMARK 465 ALA B 235 REMARK 465 GLU B 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 74 CE NZ REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 LYS A 84 NZ REMARK 470 GLN A 85 CD OE1 NE2 REMARK 470 LYS A 116 CE NZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 192 CD OE1 OE2 REMARK 470 ARG A 201 CD NE CZ NH1 NH2 REMARK 470 LYS A 208 CE NZ REMARK 470 LYS A 224 CD CE NZ REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 69 CE NZ REMARK 470 LYS B 74 CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 MET B 130 CG SD CE REMARK 470 LYS B 147 CE NZ REMARK 470 GLU B 163 CD OE1 OE2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 LYS B 204 CE NZ REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 GLN B 212 CG CD OE1 NE2 REMARK 470 VAL B 222 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 23 37.82 -86.12 REMARK 500 ALA A 24 -153.32 -150.73 REMARK 500 PHE B 22 27.96 -164.53 REMARK 500 ASP B 66 90.83 -174.52 REMARK 500 ASN B 83 102.72 -165.19 REMARK 500 ALA B 124 -10.89 -152.78 REMARK 500 GLN B 194 34.38 -143.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 456 DISTANCE = 6.07 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AGI RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) IN COMPLEX WITH JMC31 REMARK 900 RELATED ID: 8AGJ RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN HEAT SHOCK PROTEIN 90-ALPHA N-TERMINAL DOMAIN REMARK 900 (HSP90-NTD) VARIANT K112A IN COMPLEX WITH JMC31 DBREF 8AGL A 1 236 UNP P07900 HS90A_HUMAN 1 236 DBREF 8AGL B 1 236 UNP P07900 HS90A_HUMAN 1 236 SEQADV 8AGL MET A -19 UNP P07900 INITIATING METHIONINE SEQADV 8AGL GLY A -18 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER A -17 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER A -16 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS A -15 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS A -14 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS A -13 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS A -12 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS A -11 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS A -10 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER A -9 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER A -8 UNP P07900 EXPRESSION TAG SEQADV 8AGL GLY A -7 UNP P07900 EXPRESSION TAG SEQADV 8AGL LEU A -6 UNP P07900 EXPRESSION TAG SEQADV 8AGL VAL A -5 UNP P07900 EXPRESSION TAG SEQADV 8AGL PRO A -4 UNP P07900 EXPRESSION TAG SEQADV 8AGL ARG A -3 UNP P07900 EXPRESSION TAG SEQADV 8AGL GLY A -2 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER A -1 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS A 0 UNP P07900 EXPRESSION TAG SEQADV 8AGL ARG A 112 UNP P07900 LYS 112 ENGINEERED MUTATION SEQADV 8AGL MET B -19 UNP P07900 INITIATING METHIONINE SEQADV 8AGL GLY B -18 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER B -17 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER B -16 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS B -15 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS B -14 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS B -13 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS B -12 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS B -11 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS B -10 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER B -9 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER B -8 UNP P07900 EXPRESSION TAG SEQADV 8AGL GLY B -7 UNP P07900 EXPRESSION TAG SEQADV 8AGL LEU B -6 UNP P07900 EXPRESSION TAG SEQADV 8AGL VAL B -5 UNP P07900 EXPRESSION TAG SEQADV 8AGL PRO B -4 UNP P07900 EXPRESSION TAG SEQADV 8AGL ARG B -3 UNP P07900 EXPRESSION TAG SEQADV 8AGL GLY B -2 UNP P07900 EXPRESSION TAG SEQADV 8AGL SER B -1 UNP P07900 EXPRESSION TAG SEQADV 8AGL HIS B 0 UNP P07900 EXPRESSION TAG SEQADV 8AGL ARG B 112 UNP P07900 LYS 112 ENGINEERED MUTATION SEQRES 1 A 256 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 256 LEU VAL PRO ARG GLY SER HIS MET PRO GLU GLU THR GLN SEQRES 3 A 256 THR GLN ASP GLN PRO MET GLU GLU GLU GLU VAL GLU THR SEQRES 4 A 256 PHE ALA PHE GLN ALA GLU ILE ALA GLN LEU MET SER LEU SEQRES 5 A 256 ILE ILE ASN THR PHE TYR SER ASN LYS GLU ILE PHE LEU SEQRES 6 A 256 ARG GLU LEU ILE SER ASN SER SER ASP ALA LEU ASP LYS SEQRES 7 A 256 ILE ARG TYR GLU SER LEU THR ASP PRO SER LYS LEU ASP SEQRES 8 A 256 SER GLY LYS GLU LEU HIS ILE ASN LEU ILE PRO ASN LYS SEQRES 9 A 256 GLN ASP ARG THR LEU THR ILE VAL ASP THR GLY ILE GLY SEQRES 10 A 256 MET THR LYS ALA ASP LEU ILE ASN ASN LEU GLY THR ILE SEQRES 11 A 256 ALA ARG SER GLY THR LYS ALA PHE MET GLU ALA LEU GLN SEQRES 12 A 256 ALA GLY ALA ASP ILE SER MET ILE GLY GLN PHE GLY VAL SEQRES 13 A 256 GLY PHE TYR SER ALA TYR LEU VAL ALA GLU LYS VAL THR SEQRES 14 A 256 VAL ILE THR LYS HIS ASN ASP ASP GLU GLN TYR ALA TRP SEQRES 15 A 256 GLU SER SER ALA GLY GLY SER PHE THR VAL ARG THR ASP SEQRES 16 A 256 THR GLY GLU PRO MET GLY ARG GLY THR LYS VAL ILE LEU SEQRES 17 A 256 HIS LEU LYS GLU ASP GLN THR GLU TYR LEU GLU GLU ARG SEQRES 18 A 256 ARG ILE LYS GLU ILE VAL LYS LYS HIS SER GLN PHE ILE SEQRES 19 A 256 GLY TYR PRO ILE THR LEU PHE VAL GLU LYS GLU ARG ASP SEQRES 20 A 256 LYS GLU VAL SER ASP ASP GLU ALA GLU SEQRES 1 B 256 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 256 LEU VAL PRO ARG GLY SER HIS MET PRO GLU GLU THR GLN SEQRES 3 B 256 THR GLN ASP GLN PRO MET GLU GLU GLU GLU VAL GLU THR SEQRES 4 B 256 PHE ALA PHE GLN ALA GLU ILE ALA GLN LEU MET SER LEU SEQRES 5 B 256 ILE ILE ASN THR PHE TYR SER ASN LYS GLU ILE PHE LEU SEQRES 6 B 256 ARG GLU LEU ILE SER ASN SER SER ASP ALA LEU ASP LYS SEQRES 7 B 256 ILE ARG TYR GLU SER LEU THR ASP PRO SER LYS LEU ASP SEQRES 8 B 256 SER GLY LYS GLU LEU HIS ILE ASN LEU ILE PRO ASN LYS SEQRES 9 B 256 GLN ASP ARG THR LEU THR ILE VAL ASP THR GLY ILE GLY SEQRES 10 B 256 MET THR LYS ALA ASP LEU ILE ASN ASN LEU GLY THR ILE SEQRES 11 B 256 ALA ARG SER GLY THR LYS ALA PHE MET GLU ALA LEU GLN SEQRES 12 B 256 ALA GLY ALA ASP ILE SER MET ILE GLY GLN PHE GLY VAL SEQRES 13 B 256 GLY PHE TYR SER ALA TYR LEU VAL ALA GLU LYS VAL THR SEQRES 14 B 256 VAL ILE THR LYS HIS ASN ASP ASP GLU GLN TYR ALA TRP SEQRES 15 B 256 GLU SER SER ALA GLY GLY SER PHE THR VAL ARG THR ASP SEQRES 16 B 256 THR GLY GLU PRO MET GLY ARG GLY THR LYS VAL ILE LEU SEQRES 17 B 256 HIS LEU LYS GLU ASP GLN THR GLU TYR LEU GLU GLU ARG SEQRES 18 B 256 ARG ILE LYS GLU ILE VAL LYS LYS HIS SER GLN PHE ILE SEQRES 19 B 256 GLY TYR PRO ILE THR LEU PHE VAL GLU LYS GLU ARG ASP SEQRES 20 B 256 LYS GLU VAL SER ASP ASP GLU ALA GLU HET M0U A 301 36 HET M0U B 301 36 HETNAM M0U 1-[2,4-BIS(OXIDANYL)-5-PROPAN-2-YL-PHENYL]-5-[4- HETNAM 2 M0U [(CYCLOHEXYLMETHYLAMINO)METHYL]PHENYL]-~{N}-ETHYL-1,2, HETNAM 3 M0U 3-TRIAZOLE-4-CARBOXAMIDE FORMUL 3 M0U 2(C28 H37 N5 O3) FORMUL 5 HOH *125(H2 O) HELIX 1 AA1 GLU A 25 TYR A 38 1 14 HELIX 2 AA2 GLU A 42 ASP A 66 1 25 HELIX 3 AA3 PRO A 67 GLY A 73 5 7 HELIX 4 AA4 THR A 99 GLY A 108 1 10 HELIX 5 AA5 GLY A 108 ALA A 124 1 17 HELIX 6 AA6 ASP A 127 GLY A 135 5 9 HELIX 7 AA7 VAL A 136 LEU A 143 5 8 HELIX 8 AA8 GLU A 192 LEU A 198 5 7 HELIX 9 AA9 GLU A 199 GLN A 212 1 14 HELIX 10 AB1 ILE B 26 PHE B 37 1 12 HELIX 11 AB2 ASN B 40 GLU B 42 5 3 HELIX 12 AB3 ILE B 43 THR B 65 1 23 HELIX 13 AB4 ASP B 66 ASP B 71 5 6 HELIX 14 AB5 THR B 99 GLY B 108 1 10 HELIX 15 AB6 GLY B 108 GLN B 123 1 16 HELIX 16 AB7 ASP B 127 GLY B 135 5 9 HELIX 17 AB8 VAL B 136 LEU B 143 5 8 HELIX 18 AB9 GLU B 192 LEU B 198 5 7 HELIX 19 AC1 GLU B 199 SER B 211 1 13 SHEET 1 AA1 8 VAL A 17 ALA A 21 0 SHEET 2 AA1 8 SER A 169 THR A 174 -1 O PHE A 170 N PHE A 20 SHEET 3 AA1 8 TYR A 160 SER A 164 -1 N ALA A 161 O ARG A 173 SHEET 4 AA1 8 ALA A 145 LYS A 153 -1 N VAL A 150 O TRP A 162 SHEET 5 AA1 8 GLY A 183 LEU A 190 -1 O ILE A 187 N THR A 149 SHEET 6 AA1 8 THR A 88 ASP A 93 -1 N LEU A 89 O LEU A 188 SHEET 7 AA1 8 ILE A 78 ASN A 83 -1 N ASN A 79 O VAL A 92 SHEET 8 AA1 8 ILE A 218 LEU A 220 1 O THR A 219 N LEU A 80 SHEET 1 AA2 8 GLU B 18 ALA B 21 0 SHEET 2 AA2 8 SER B 169 THR B 174 -1 O PHE B 170 N PHE B 20 SHEET 3 AA2 8 GLN B 159 ALA B 166 -1 N ALA B 161 O ARG B 173 SHEET 4 AA2 8 ALA B 145 LYS B 153 -1 N VAL B 150 O TRP B 162 SHEET 5 AA2 8 GLY B 183 LEU B 190 -1 O HIS B 189 N GLU B 146 SHEET 6 AA2 8 THR B 88 ASP B 93 -1 N ILE B 91 O VAL B 186 SHEET 7 AA2 8 ILE B 78 ASN B 83 -1 N ILE B 81 O THR B 90 SHEET 8 AA2 8 ILE B 218 LEU B 220 1 O THR B 219 N LEU B 80 CRYST1 72.864 72.864 210.526 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004750 0.00000