HEADER TRANSFERASE 20-JUL-22 8AGQ TITLE CRYSTAL STRUCTURE OF ANTHOCYANIN-RELATED GSTF8 FROM POPULUS TITLE 2 TRICHOCARPA IN COMPLEX WITH (-)-CATECHIN AND GLUTATHIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TRICHOCARPA; SOURCE 3 ORGANISM_COMMON: BLACK COTTONWOOD; SOURCE 4 ORGANISM_TAXID: 3694; SOURCE 5 GENE: POPTR_017G138800; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ANTHOCYANIN, DEHYDRATASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.EICHENBERGER,S.HUEPPI,T.SCHWANDER,P.MITTL,M.R.BULLER REVDAT 3 08-NOV-23 8AGQ 1 JRNL REVDAT 2 27-SEP-23 8AGQ 1 JRNL REVDAT 1 30-AUG-23 8AGQ 0 JRNL AUTH M.EICHENBERGER,T.SCHWANDER,S.HUPPI,J.KREUZER,P.R.E.MITTL, JRNL AUTH 2 F.PECCATI,G.JIMENEZ-OSES,M.NAESBY,R.M.BULLER JRNL TITL THE CATALYTIC ROLE OF GLUTATHIONE TRANSFERASES IN JRNL TITL 2 HETEROLOGOUS ANTHOCYANIN BIOSYNTHESIS. JRNL REF NAT CATAL V. 6 927 2023 JRNL REFN ESSN 2520-1158 JRNL PMID 37881531 JRNL DOI 10.1038/S41929-023-01018-Y REMARK 2 REMARK 2 RESOLUTION. 1.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 100738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.881 REMARK 3 FREE R VALUE TEST SET COUNT : 4917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7056 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 338 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06200 REMARK 3 B22 (A**2) : -0.70200 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.70300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.026 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2013 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1857 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2756 ; 1.727 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4358 ; 0.626 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 8.589 ; 5.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 365 ;12.937 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 291 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2384 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 400 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 447 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 97 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 956 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 962 ; 2.808 ; 1.372 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 962 ; 2.807 ;14.686 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1238 ; 3.533 ; 2.065 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1239 ; 3.532 ; 2.152 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1051 ;11.445 ; 1.769 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1052 ;11.440 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1517 ; 7.808 ; 2.484 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1518 ; 7.805 ; 2.484 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2013 ;24.941 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999995 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.093 REMARK 200 RESOLUTION RANGE LOW (A) : 38.496 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5F07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 PART PROTEIN SOLUTION (30MM TRIS PH REMARK 280 8, 200MM NACL, 1MM EDTA) 1 PART BUFFER (100MM MES PH 6.4, 200MM REMARK 280 MGCL2, 17.9% PEG200), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.97400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.72350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.97400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.72350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -21.89010 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.22389 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 474 O HOH A 613 1.88 REMARK 500 O HOH A 405 O HOH A 586 1.93 REMARK 500 O HOH A 638 O HOH A 668 2.06 REMARK 500 O HOH A 472 O HOH A 616 2.08 REMARK 500 O HOH A 406 O HOH A 617 2.09 REMARK 500 O HOH A 465 O HOH A 569 2.10 REMARK 500 O HOH A 495 O HOH A 668 2.12 REMARK 500 O HOH A 512 O HOH A 678 2.12 REMARK 500 O HOH A 407 O HOH A 525 2.14 REMARK 500 O HOH A 638 O HOH A 707 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 477 O HOH A 614 2555 1.93 REMARK 500 OE2 GLU A 101 O HOH A 457 2556 2.11 REMARK 500 O HOH A 457 O HOH A 457 2556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 66 106.39 74.43 REMARK 500 ASN A 88 -60.17 -97.35 REMARK 500 HIS A 105 -72.18 -121.90 REMARK 500 ASN A 178 -89.06 -114.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 174 0.09 SIDE CHAIN REMARK 500 ARG A 189 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 710 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 711 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 55 O REMARK 620 2 GSH A 301 O11 119.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 197 OE1 REMARK 620 2 HOH A 411 O 61.8 REMARK 620 3 HOH A 462 O 60.5 6.2 REMARK 620 4 HOH A 647 O 56.1 7.8 4.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 451 O REMARK 620 2 HOH A 511 O 104.2 REMARK 620 3 HOH A 588 O 103.0 145.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 617 O REMARK 620 2 HOH A 694 O 115.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 482 O REMARK 620 2 HOH A 612 O 121.7 REMARK 620 3 HOH A 664 O 131.3 107.0 REMARK 620 N 1 2 DBREF 8AGQ A 1 214 UNP B9MWW0 B9MWW0_POPTR 1 214 SEQADV 8AGQ VAL A 10 UNP B9MWW0 MET 10 CONFLICT SEQADV 8AGQ LYS A 149 UNP B9MWW0 GLN 149 CONFLICT SEQADV 8AGQ MET A 209 UNP B9MWW0 ILE 209 CONFLICT SEQRES 1 A 214 MET VAL VAL LYS VAL TYR GLY PRO ALA VAL ALA VAL CYS SEQRES 2 A 214 PRO GLN ARG VAL MET ALA CYS LEU LEU GLU LYS GLY VAL SEQRES 3 A 214 GLU PHE ASP LEU VAL HIS VAL ASP LEU ASP SER GLY GLU SEQRES 4 A 214 GLN LYS LEU PRO GLU PHE LEU LEU LYS GLN PRO PHE GLY SEQRES 5 A 214 GLN VAL PRO VAL VAL GLU ASP GLY ASP PHE LYS LEU PHE SEQRES 6 A 214 GLU SER ARG ALA ILE ILE ARG TYR TYR ALA ALA LYS TYR SEQRES 7 A 214 GLU ASP ARG GLY PRO ASN LEU LEU GLY ASN THR LEU GLU SEQRES 8 A 214 GLU LYS ALA LEU VAL ASP GLN TRP LEU GLU ILE GLU ALA SEQRES 9 A 214 HIS ASN PHE ASN ASP LEU VAL PHE ASN ILE VAL PHE GLN SEQRES 10 A 214 VAL VAL ILE LEU PRO ARG ILE GLY GLN GLN GLY ASP SER SEQRES 11 A 214 GLU LEU VAL ARG THR TYR GLU GLU LYS LEU GLU LYS VAL SEQRES 12 A 214 LEU ASP VAL TYR GLU LYS ARG LEU SER LYS SER LYS TYR SEQRES 13 A 214 LEU ALA GLY ASP SER PHE THR LEU ALA ASP LEU SER HIS SEQRES 14 A 214 LEU PRO ALA THR ARG TYR LEU VAL ASN GLU ALA GLY LEU SEQRES 15 A 214 GLY HIS LEU VAL LYS ASP ARG LYS LYS LEU ASN ALA TRP SEQRES 16 A 214 TRP GLU ASP ILE SER SER ARG PRO ALA TRP LYS LYS LEU SEQRES 17 A 214 MET ASN LEU ALA GLY PHE HET GSH A 301 36 HET M5O A 302 35 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HET NA A 307 1 HETNAM GSH GLUTATHIONE HETNAM M5O (2~{S},3~{R})-2-[3,4-BIS(OXIDANYL)PHENYL]-3,4-DIHYDRO- HETNAM 2 M5O 2~{H}-CHROMENE-3,5,7-TRIOL HETNAM NA SODIUM ION HETSYN M5O (-)-CATECHIN FORMUL 2 GSH C10 H17 N3 O6 S FORMUL 3 M5O C15 H14 O6 FORMUL 4 NA 5(NA 1+) FORMUL 9 HOH *312(H2 O) HELIX 1 AA1 ALA A 11 LYS A 24 1 14 HELIX 2 AA2 ASP A 34 LYS A 41 5 8 HELIX 3 AA3 LEU A 42 LEU A 47 1 6 HELIX 4 AA4 GLU A 66 TYR A 78 1 13 HELIX 5 AA5 THR A 89 HIS A 105 1 17 HELIX 6 AA6 PHE A 107 VAL A 119 1 13 HELIX 7 AA7 VAL A 119 ILE A 124 1 6 HELIX 8 AA8 ASP A 129 SER A 154 1 26 HELIX 9 AA9 THR A 163 SER A 168 1 6 HELIX 10 AB1 HIS A 169 ASN A 178 1 10 HELIX 11 AB2 GLY A 183 ASP A 188 1 6 HELIX 12 AB3 ARG A 189 SER A 200 1 12 HELIX 13 AB4 ARG A 202 GLY A 213 1 12 SHEET 1 AA1 4 PHE A 28 VAL A 31 0 SHEET 2 AA1 4 VAL A 3 TYR A 6 1 N VAL A 5 O VAL A 31 SHEET 3 AA1 4 VAL A 56 ASP A 59 -1 O GLU A 58 N LYS A 4 SHEET 4 AA1 4 PHE A 62 PHE A 65 -1 O PHE A 62 N ASP A 59 LINK SG BCYS A 13 SG2 GSH A 301 1555 1555 2.16 LINK O PRO A 55 NA NA A 307 1555 1555 2.74 LINK OE1AGLU A 197 NA NA A 305 1555 4546 2.88 LINK O11 GSH A 301 NA NA A 307 1555 1555 2.81 LINK NA NA A 303 O HOH A 451 1555 2556 3.01 LINK NA NA A 303 O HOH A 511 1555 1555 3.09 LINK NA NA A 303 O HOH A 588 1555 1555 3.03 LINK NA NA A 304 O HOH A 617 1555 1555 2.81 LINK NA NA A 304 O HOH A 694 1555 1555 2.77 LINK NA NA A 305 O HOH A 411 1555 1555 2.81 LINK NA NA A 305 O HOH A 462 1555 4556 2.81 LINK NA NA A 305 O HOH A 647 1555 1555 2.57 LINK NA NA A 306 O HOH A 482 1555 1555 2.72 LINK NA NA A 306 O HOH A 612 1555 1555 2.83 LINK NA NA A 306 O HOH A 664 1555 1555 2.70 CISPEP 1 VAL A 54 PRO A 55 0 7.71 CRYST1 89.948 55.447 54.787 90.00 113.55 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011118 0.000000 0.004846 0.00000 SCALE2 0.000000 0.018035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019911 0.00000