HEADER SIGNALING PROTEIN 20-JUL-22 8AH2 TITLE CRYSTAL STRUCTURE OF HUMAN 14-3-3 ZETA FUSED TO THE NPM1 PEPTIDE TITLE 2 INCLUDING PHOSPHOSERINE-48 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN ZETA/DELTA,NUCLEOPHOSMIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1,NPM,NUCLEOLAR COMPND 5 PHOSPHOPROTEIN B23,NUCLEOLAR PROTEIN NO38,NUMATRIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: N-TERMIANL RESIDUES - GPH ARE TAG. C-TERMINAL GGGG - COMPND 9 LINKER, AND C-TERMINAL LRTV(SEP)LGAGAKD IS NPM1 PEPTIDE,N-TERMIANL COMPND 10 RESIDUES - GPH ARE TAG. C-TERMINAL GGGG - LINKER, AND C-TERMINAL COMPND 11 LRTV(SEP)LGAGAKD IS NPM1 PEPTIDE,N-TERMIANL RESIDUES - GPH ARE TAG. COMPND 12 C-TERMINAL GGGG - LINKER, AND C-TERMINAL LRTV(SEP)LGAGAKD IS NPM1 COMPND 13 PEPTIDE,N-TERMIANL RESIDUES - GPH ARE TAG. C-TERMINAL GGGG - LINKER, COMPND 14 AND C-TERMINAL LRTV(SEP)LGAGAKD IS NPM1 PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAZ, NPM1, NPM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 14-3-3, NUCLEOPHOSMIN 1, NPM1, B23, NUMATRIN, SER48, PHOSPHOSERINE KEYWDS 2 BINDER, PHOSPHOTHREONINE BINDER, PENTAMER, PHOSPHORYLATION, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,A.A.KAPITONOVA,K.V.TUGAEVA,L.A.VARFOLOMEEVA,N.N.SLUCHANKO REVDAT 3 16-OCT-24 8AH2 1 REMARK REVDAT 2 31-JAN-24 8AH2 1 REMARK REVDAT 1 14-SEP-22 8AH2 0 JRNL AUTH A.A.KAPITONOVA,K.V.TUGAEVA,L.A.VARFOLOMEEVA,K.M.BOYKO, JRNL AUTH 2 R.B.COOLEY,N.N.SLUCHANKO JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION BY 14-3-3 PROTEINS OF A JRNL TITL 2 CONDITIONAL BINDING SITE WITHIN THE OLIGOMERIZATION DOMAIN JRNL TITL 3 OF HUMAN NUCLEOPHOSMIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 627 176 2022 JRNL REFN ESSN 1090-2104 JRNL PMID 36041327 JRNL DOI 10.1016/J.BBRC.2022.08.047 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 14615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.4550 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.70000 REMARK 3 B22 (A**2) : -6.05000 REMARK 3 B33 (A**2) : -4.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.340 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.479 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.478 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 64.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3580 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3167 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4853 ; 1.363 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7310 ; 0.473 ; 1.547 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.798 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ;11.171 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;17.668 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 557 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4203 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 705 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 243 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5246 24.1548 20.3821 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.4189 REMARK 3 T33: 0.2930 T12: 0.2854 REMARK 3 T13: -0.0916 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 2.9523 L22: 1.8027 REMARK 3 L33: 3.2980 L12: 0.4061 REMARK 3 L13: -1.2235 L23: 0.0128 REMARK 3 S TENSOR REMARK 3 S11: -0.4852 S12: -0.5941 S13: 0.0713 REMARK 3 S21: 0.2103 S22: 0.4037 S23: -0.1080 REMARK 3 S31: 0.0454 S32: 0.3198 S33: 0.0815 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 241 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2603 -8.0376 19.1678 REMARK 3 T TENSOR REMARK 3 T11: 0.2858 T22: 0.4145 REMARK 3 T33: 0.3837 T12: 0.3009 REMARK 3 T13: 0.0397 T23: 0.1307 REMARK 3 L TENSOR REMARK 3 L11: 1.5498 L22: 5.6087 REMARK 3 L33: 1.3868 L12: -0.0693 REMARK 3 L13: 0.0187 L23: 0.7607 REMARK 3 S TENSOR REMARK 3 S11: 0.1054 S12: 0.1533 S13: -0.0160 REMARK 3 S21: -0.2758 S22: -0.2015 S23: -0.4572 REMARK 3 S31: -0.1315 S32: 0.2019 S33: 0.0961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8AH2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 21.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 1.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6FNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COCL2, 0.1 M MES, PH 6.5, 2.2 M REMARK 280 (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.84800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.70650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.10350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.70650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.84800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.10350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.84800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.10350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.70650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.10350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.84800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.70650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -79.69600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 55.10350 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -55.10350 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 70 REMARK 465 GLY A 71 REMARK 465 LYS A 244 REMARK 465 ASP A 245 REMARK 465 GLY C -2 REMARK 465 PRO C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLU C 70 REMARK 465 GLY C 242 REMARK 465 ALA C 243 REMARK 465 LYS C 244 REMARK 465 ASP C 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 LYS A 9 CB CG CD CE NZ REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 LYS A 49 NZ REMARK 470 GLN A 67 CB CG CD OE1 NE2 REMARK 470 LYS A 68 CB CG CD CE NZ REMARK 470 GLN A 76 CG CD OE1 NE2 REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 ARG A 80 CD NE CZ NH1 NH2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLN A 111 CD OE1 NE2 REMARK 470 ASP A 136 CG OD1 OD2 REMARK 470 LYS A 139 CD CE NZ REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 ILE A 155 CD1 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 TYR A 211 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ASP C 2 CB CG OD1 OD2 REMARK 470 LYS C 3 CB CG CD CE NZ REMARK 470 GLU C 5 CB CG CD OE1 OE2 REMARK 470 GLN C 8 CG CD OE1 NE2 REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 LYS C 11 CG CD CE NZ REMARK 470 LEU C 12 CG CD1 CD2 REMARK 470 GLU C 39 CD OE1 OE2 REMARK 470 LYS C 49 CD CE NZ REMARK 470 GLN C 67 CB CG CD OE1 NE2 REMARK 470 LYS C 68 CG CD CE NZ REMARK 470 GLY C 71 N REMARK 470 GLN C 76 CB CG CD OE1 NE2 REMARK 470 GLN C 77 CG CD OE1 NE2 REMARK 470 MET C 78 CG SD CE REMARK 470 ARG C 80 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 LYS C 85 NZ REMARK 470 ILE C 86 CB CG1 CG2 CD1 REMARK 470 LYS C 103 CG CD CE NZ REMARK 470 ASP C 136 CG OD1 OD2 REMARK 470 LYS C 138 CG CD CE NZ REMARK 470 LYS C 139 CG CD CE NZ REMARK 470 VAL C 142 CG1 CG2 REMARK 470 GLN C 144 OE1 NE2 REMARK 470 GLN C 147 CB CG CD OE1 NE2 REMARK 470 ILE C 155 CD1 REMARK 470 ILE C 181 CD1 REMARK 470 GLU C 186 CG CD OE1 OE2 REMARK 470 LYS C 187 CG CD CE NZ REMARK 470 LYS C 193 CG CD CE NZ REMARK 470 THR C 205 CB OG1 CG2 REMARK 470 GLU C 208 CG CD OE1 OE2 REMARK 470 GLU C 209 CG CD OE1 OE2 REMARK 470 SER C 210 CB OG REMARK 470 LYS C 212 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 109 108.55 -57.60 REMARK 500 THR A 205 6.95 -69.55 REMARK 500 GLU A 209 -50.75 -29.42 REMARK 500 THR A 229 41.01 -108.76 REMARK 500 ALA C 72 -157.97 -170.92 REMARK 500 ALA C 73 -73.28 76.82 REMARK 500 ALA C 109 108.88 -53.40 REMARK 500 SER C 207 -141.65 -100.77 REMARK 500 GLU C 209 -49.17 69.50 REMARK 500 SER C 210 45.49 -75.07 REMARK 500 TYR C 211 -48.70 -139.94 REMARK 500 SEP C 238 -156.87 -118.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 242 ALA A 243 -146.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 18 0.08 SIDE CHAIN REMARK 500 ARG A 55 0.08 SIDE CHAIN REMARK 500 ARG A 167 0.08 SIDE CHAIN REMARK 500 ARG A 222 0.08 SIDE CHAIN REMARK 500 ARG C 18 0.08 SIDE CHAIN REMARK 500 ARG C 55 0.10 SIDE CHAIN REMARK 500 ARG C 83 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8AH2 A 1 229 UNP P63104 1433Z_HUMAN 1 229 DBREF 8AH2 A 234 245 UNP P06748 NPM_HUMAN 44 55 DBREF 8AH2 C 1 229 UNP P63104 1433Z_HUMAN 1 229 DBREF 8AH2 C 234 245 UNP P06748 NPM_HUMAN 44 55 SEQADV 8AH2 GLY A -2 UNP P63104 EXPRESSION TAG SEQADV 8AH2 PRO A -1 UNP P63104 EXPRESSION TAG SEQADV 8AH2 HIS A 0 UNP P63104 EXPRESSION TAG SEQADV 8AH2 ALA A 58 UNP P63104 SER 58 ENGINEERED MUTATION SEQADV 8AH2 ALA A 73 UNP P63104 GLU 73 ENGINEERED MUTATION SEQADV 8AH2 ALA A 74 UNP P63104 LYS 74 ENGINEERED MUTATION SEQADV 8AH2 ALA A 75 UNP P63104 LYS 75 ENGINEERED MUTATION SEQADV 8AH2 ALA A 157 UNP P63104 LYS 157 ENGINEERED MUTATION SEQADV 8AH2 ALA A 158 UNP P63104 LYS 158 ENGINEERED MUTATION SEQADV 8AH2 ALA A 159 UNP P63104 GLU 159 ENGINEERED MUTATION SEQADV 8AH2 GLY A 230 UNP P63104 LINKER SEQADV 8AH2 GLY A 231 UNP P63104 LINKER SEQADV 8AH2 GLY A 232 UNP P63104 LINKER SEQADV 8AH2 GLY A 233 UNP P63104 LINKER SEQADV 8AH2 GLY C -2 UNP P63104 EXPRESSION TAG SEQADV 8AH2 PRO C -1 UNP P63104 EXPRESSION TAG SEQADV 8AH2 HIS C 0 UNP P63104 EXPRESSION TAG SEQADV 8AH2 ALA C 58 UNP P63104 SER 58 ENGINEERED MUTATION SEQADV 8AH2 ALA C 73 UNP P63104 GLU 73 ENGINEERED MUTATION SEQADV 8AH2 ALA C 74 UNP P63104 LYS 74 ENGINEERED MUTATION SEQADV 8AH2 ALA C 75 UNP P63104 LYS 75 ENGINEERED MUTATION SEQADV 8AH2 ALA C 157 UNP P63104 LYS 157 ENGINEERED MUTATION SEQADV 8AH2 ALA C 158 UNP P63104 LYS 158 ENGINEERED MUTATION SEQADV 8AH2 ALA C 159 UNP P63104 GLU 159 ENGINEERED MUTATION SEQADV 8AH2 GLY C 230 UNP P63104 LINKER SEQADV 8AH2 GLY C 231 UNP P63104 LINKER SEQADV 8AH2 GLY C 232 UNP P63104 LINKER SEQADV 8AH2 GLY C 233 UNP P63104 LINKER SEQRES 1 A 248 GLY PRO HIS MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 A 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 A 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 A 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 A 248 ASN VAL VAL GLY ALA ARG ARG SER ALA TRP ARG VAL VAL SEQRES 6 A 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA ALA ALA ALA SEQRES 7 A 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 A 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 A 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 A 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 A 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 A 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 A 248 GLU ILE SER ALA ALA ALA MET GLN PRO THR HIS PRO ILE SEQRES 14 A 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 A 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 A 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 A 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 A 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR GLY GLY SEQRES 19 A 248 GLY GLY LEU ARG THR VAL SEP LEU GLY ALA GLY ALA LYS SEQRES 20 A 248 ASP SEQRES 1 C 248 GLY PRO HIS MET ASP LYS ASN GLU LEU VAL GLN LYS ALA SEQRES 2 C 248 LYS LEU ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA SEQRES 3 C 248 ALA CYS MET LYS SER VAL THR GLU GLN GLY ALA GLU LEU SEQRES 4 C 248 SER ASN GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS SEQRES 5 C 248 ASN VAL VAL GLY ALA ARG ARG SER ALA TRP ARG VAL VAL SEQRES 6 C 248 SER SER ILE GLU GLN LYS THR GLU GLY ALA ALA ALA ALA SEQRES 7 C 248 GLN GLN MET ALA ARG GLU TYR ARG GLU LYS ILE GLU THR SEQRES 8 C 248 GLU LEU ARG ASP ILE CYS ASN ASP VAL LEU SER LEU LEU SEQRES 9 C 248 GLU LYS PHE LEU ILE PRO ASN ALA SER GLN ALA GLU SER SEQRES 10 C 248 LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR TYR ARG SEQRES 11 C 248 TYR LEU ALA GLU VAL ALA ALA GLY ASP ASP LYS LYS GLY SEQRES 12 C 248 ILE VAL ASP GLN SER GLN GLN ALA TYR GLN GLU ALA PHE SEQRES 13 C 248 GLU ILE SER ALA ALA ALA MET GLN PRO THR HIS PRO ILE SEQRES 14 C 248 ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE TYR TYR SEQRES 15 C 248 GLU ILE LEU ASN SER PRO GLU LYS ALA CYS SER LEU ALA SEQRES 16 C 248 LYS THR ALA PHE ASP GLU ALA ILE ALA GLU LEU ASP THR SEQRES 17 C 248 LEU SER GLU GLU SER TYR LYS ASP SER THR LEU ILE MET SEQRES 18 C 248 GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR GLY GLY SEQRES 19 C 248 GLY GLY LEU ARG THR VAL SEP LEU GLY ALA GLY ALA LYS SEQRES 20 C 248 ASP MODRES 8AH2 SEP A 238 SER MODIFIED RESIDUE MODRES 8AH2 SEP C 238 SER MODIFIED RESIDUE HET SEP A 238 10 HET SEP C 238 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 HOH *14(H2 O) HELIX 1 AA1 ASP A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 THR A 69 1 33 HELIX 4 AA4 ALA A 73 PHE A 104 1 32 HELIX 5 AA5 PHE A 104 ALA A 109 1 6 HELIX 6 AA6 GLN A 111 GLU A 131 1 21 HELIX 7 AA7 GLY A 135 MET A 160 1 26 HELIX 8 AA8 HIS A 164 ILE A 181 1 18 HELIX 9 AA9 SER A 184 ALA A 201 1 18 HELIX 10 AB1 GLU A 202 LEU A 206 5 5 HELIX 11 AB2 SER A 207 GLU A 209 5 3 HELIX 12 AB3 SER A 210 THR A 229 1 20 HELIX 13 AB4 LYS C 3 ALA C 16 1 14 HELIX 14 AB5 ARG C 18 GLN C 32 1 15 HELIX 15 AB6 SER C 37 THR C 69 1 33 HELIX 16 AB7 ALA C 73 PHE C 104 1 32 HELIX 17 AB8 PHE C 104 ALA C 109 1 6 HELIX 18 AB9 GLN C 111 GLU C 131 1 21 HELIX 19 AC1 GLY C 135 MET C 160 1 26 HELIX 20 AC2 HIS C 164 ILE C 181 1 18 HELIX 21 AC3 SER C 184 ALA C 201 1 18 HELIX 22 AC4 TYR C 211 THR C 229 1 19 LINK C VAL A 237 N SEP A 238 1555 1555 1.34 LINK C SEP A 238 N LEU A 239 1555 1555 1.33 LINK C VAL C 237 N SEP C 238 1555 1555 1.34 LINK C SEP C 238 N LEU C 239 1555 1555 1.34 CRYST1 79.696 110.207 163.413 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006119 0.00000