HEADER HYDROLASE 20-JUL-22 8AH3 TITLE DG04279 GLYCOSIDE HYDROLASE FAMILY 172 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DG02479 GH127; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DYSGONOMONAS GADEI; SOURCE 3 ORGANISM_TAXID: 156974; SOURCE 4 GENE: HMPREF9455_02479; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ARABINOGALACTAN, GLYCOSIDE HYDROLASE FAMILY 172, GH172, KEYWDS 2 ARABINOFURANOSIDASE, HEXAMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.AL-JOURANI,E.C.LOWE,A.BASLE REVDAT 1 16-AUG-23 8AH3 0 JRNL AUTH O.AL-JOURANI,S.BENEDICT,J.ROSS,A.LAYTON,P.VAN DER PEET, JRNL AUTH 2 N.P.BAILEY,T.HEUNIS,V.MARANDO,J.MANION,F.MENSITIERI, JRNL AUTH 3 J.ABELLON-RUIZ,S.L.ORAM,L.PARSONS,A.CARTMEL,G.S.A.WRIGHT, JRNL AUTH 4 A.BASLE,M.TROST,L.L.KIESSLING,B.HENRISSAT,J.MUNOZ-MUNOZ, JRNL AUTH 5 A.LOVERING,R.P.HIRT,S.J.WILLIAMS,E.C.LOWE,P.J.MOYNIHAN JRNL TITL MINING THE HUMAN GUT MICROBIOME IDENTIFIES MYCOBACTERIAL JRNL TITL 2 D-ARABINAN DEGRADING ENZYMES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 87400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.065 REMARK 3 FREE R VALUE TEST SET COUNT : 4427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6027 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3960 REMARK 3 BIN FREE R VALUE SET COUNT : 334 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86500 REMARK 3 B22 (A**2) : 0.86500 REMARK 3 B33 (A**2) : -2.80500 REMARK 3 B12 (A**2) : 0.43200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.400 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3147 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2676 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4286 ; 1.703 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6260 ; 0.606 ; 1.551 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 7.685 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 19 ;12.547 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;13.062 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 421 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3641 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 679 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 496 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 158 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1506 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 155 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.087 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 8 ; 0.092 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1499 ; 2.049 ; 2.463 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1499 ; 2.009 ; 2.463 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1872 ; 2.497 ; 3.688 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1873 ; 2.498 ; 3.689 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1648 ; 3.162 ; 2.729 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1649 ; 3.161 ; 2.730 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2414 ; 4.584 ; 3.972 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2415 ; 4.584 ; 3.973 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XIA2, POINTLESS, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 68.112 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 68.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KQ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MOPS/HEPES PH 7.5, 20 MM 1,6 REMARK 280 -HEXANEDIOL; 20 MM 1-BUTANOL 20 MM 1,2-PROPANEDIOL; 20 MM 2- REMARK 280 PROPANOL; 20 MM 1,4-BUTANEDIOL; 20 MM 1,3-PROPANEDIOALCOHOL, 20 % REMARK 280 ETYLENE GLYCOL AND 10 % PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.57500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.73539 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 96.44000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.57500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.73539 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 96.44000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.57500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.73539 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.44000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.57500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.73539 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.44000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.57500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.73539 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.44000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.57500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.73539 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.44000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.47078 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 192.88000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.47078 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 192.88000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.47078 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 192.88000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.47078 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 192.88000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.47078 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 192.88000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.47078 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 192.88000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -446.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -44.57500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -77.20616 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 44.57500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -77.20616 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 44.57500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -25.73539 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -96.44000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -102.94155 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -96.44000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -44.57500 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 -25.73539 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -96.44000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 24 REMARK 465 GLY A 25 REMARK 465 LYS A 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 738 O HOH A 804 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 35 CD GLU A 35 OE2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 59 34.29 -86.83 REMARK 500 HIS A 83 134.27 -171.45 REMARK 500 TRP A 126 -130.85 58.28 REMARK 500 SER A 133 56.60 -144.16 REMARK 500 TRP A 212 13.77 58.45 REMARK 500 LYS A 287 47.82 -149.14 REMARK 500 PHE A 316 76.80 -110.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 44 0.08 SIDE CHAIN REMARK 500 ARG A 160 0.09 SIDE CHAIN REMARK 500 ARG A 226 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 53.4 REMARK 620 3 GLU A 35 OE1 0.0 53.4 REMARK 620 4 GLU A 35 OE2 53.4 0.0 53.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 56 O REMARK 620 2 ASP A 59 OD1 88.8 REMARK 620 3 ASP A 59 OD2 89.0 52.5 REMARK 620 4 ASP A 258 OD2 120.2 42.8 37.5 REMARK 620 5 HOH A 670 O 98.7 126.0 74.2 90.6 REMARK 620 6 HOH A 708 O 88.4 160.4 146.8 149.5 73.5 REMARK 620 7 HOH A 731 O 91.0 82.5 135.0 109.2 149.7 78.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 59 OD2 REMARK 620 2 GLU A 256 O 99.8 REMARK 620 3 ASP A 258 OD1 98.7 3.8 REMARK 620 4 THR A 274 O 102.0 4.3 3.2 REMARK 620 5 HOH A 621 O 102.6 51.3 55.1 54.7 REMARK 620 6 HOH A 670 O 77.2 165.5 161.7 162.2 143.1 REMARK 620 7 HOH A 799 O 84.9 124.2 127.8 127.7 73.2 70.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 226 O REMARK 620 2 HOH A 603 O 85.3 REMARK 620 3 HOH A 703 O 162.4 77.1 REMARK 620 N 1 2 DBREF 8AH3 A 26 401 UNP F5IZG2 F5IZG2_9BACT 26 401 SEQADV 8AH3 MET A 24 UNP F5IZG2 INITIATING METHIONINE SEQADV 8AH3 GLY A 25 UNP F5IZG2 EXPRESSION TAG SEQRES 1 A 378 MET GLY GLN ASN PRO VAL PRO GLY THR MET TYR GLU LEU SEQRES 2 A 378 SER GLN MET LYS ASN GLY MET ARG ASN ARG ARG ILE SER SEQRES 3 A 378 SER ASN ASP PRO ALA GLY GLY VAL LEU ASP HIS LEU SER SEQRES 4 A 378 ASP ILE ARG PRO GLY GLU LYS ARG ILE ILE ALA ASP ILE SEQRES 5 A 378 PRO GLY SER GLY ILE ILE ASN HIS ILE TRP ILE THR MET SEQRES 6 A 378 ALA PRO GLU PRO HIS VAL LEU ASN ARG SER ASP VAL ILE SEQRES 7 A 378 ILE ARG MET TYR TRP ASP GLY ASN ALA TYR PRO SER VAL SEQRES 8 A 378 GLU SER PRO ILE GLY PRO PHE PHE GLY GLN GLY TRP ASN SEQRES 9 A 378 GLU ARG TYR ASN TYR SER ALA LEU PRO ILE THR ALA GLY SEQRES 10 A 378 PRO ALA ASN GLY THR SER MET VAL SER TYR PHE SER MET SEQRES 11 A 378 PRO PHE ALA GLN GLY ALA ARG ILE GLU ILE GLU ASN GLN SEQRES 12 A 378 SER ASP VAL ASN LEU GLU LYS PHE TYR PHE TYR VAL ASP SEQRES 13 A 378 TYR TYR GLU THR LYS LYS LEU PRO THR ASP LEU GLY ARG SEQRES 14 A 378 PHE HIS ALA TRP TYR ASN GLN GLU LEU THR GLU ALA ALA SEQRES 15 A 378 PRO GLU GLY GLU THR GLU TRP ALA VAL ILE GLY LYS GLN SEQRES 16 A 378 ASP ASN ASN THR THR GLY ASP ARG ASN TYR VAL PHE ALA SEQRES 17 A 378 ASP ILE LYS GLY LYS GLY HIS PHE VAL GLY LEU ASN TYR SEQRES 18 A 378 TYR VAL HIS CYS PRO SER PRO ILE TRP TYR GLY GLU GLY SEQRES 19 A 378 ASP ASP PHE TRP PHE ILE ASP GLY GLU GLU GLU ALA SER SEQRES 20 A 378 LEU LEU GLY THR GLY THR GLU ASP LEU PHE ASN THR SER SEQRES 21 A 378 TRP CYS PRO LYS GLU ALA TYR SER HIS PRO TYR PHE GLY SEQRES 22 A 378 TYR PRO ARG VAL ASN ASN ASP VAL GLY TRP LEU GLY ARG SEQRES 23 A 378 THR HIS ILE TYR ARG PHE PHE ILE GLU ASP PRO VAL PHE SEQRES 24 A 378 PHE GLN LYS SER LEU LYS ALA SER ILE GLU HIS GLY HIS SEQRES 25 A 378 ALA ASN ASN LEU THR LEU ASP LEU ALA THR VAL ALA TYR SEQRES 26 A 378 TRP TYR GLN SER GLU ALA CYS PRO LEU PRO PRO ALA PRO SEQRES 27 A 378 SER LYS GLU VAL ARG LYS LEU LYS PRO PHE ILE ASN VAL SEQRES 28 A 378 PRO ASP MET HIS ARG TRP ARG HIS GLU TRP ARG LYS ASN SEQRES 29 A 378 ARG GLY GLU ASP SER LYS LEU TRP GLY ASN GLU MET PRO SEQRES 30 A 378 LYS HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HETNAM CA CALCIUM ION FORMUL 2 CA 4(CA 2+) FORMUL 6 HOH *208(H2 O) HELIX 1 AA1 GLY A 31 SER A 37 1 7 HELIX 2 AA2 ILE A 118 PHE A 122 1 5 HELIX 3 AA3 THR A 210 VAL A 214 5 5 HELIX 4 AA4 GLY A 275 PHE A 280 1 6 HELIX 5 AA5 GLY A 334 ASN A 338 5 5 HELIX 6 AA6 ASN A 373 ARG A 388 1 16 SHEET 1 AA1 5 ARG A 44 SER A 49 0 SHEET 2 AA1 5 LEU A 171 THR A 183 -1 O GLU A 182 N ARG A 44 SHEET 3 AA1 5 SER A 78A ALA A 89 -1 N HIS A 83 O ASP A 179 SHEET 4 AA1 5 SER A 146 SER A 149 -1 O MET A 147 N ILE A 86 SHEET 5 AA1 5 ILE A 137 GLY A 140 -1 N THR A 138 O VAL A 148 SHEET 1 AA2 4 LEU A 61 ILE A 64 0 SHEET 2 AA2 4 LEU A 171 THR A 183 -1 O PHE A 174 N LEU A 61 SHEET 3 AA2 4 SER A 78A ALA A 89 -1 N HIS A 83 O ASP A 179 SHEET 4 AA2 4 MET A 153 PHE A 155 -1 O PHE A 155 N GLY A 79 SHEET 1 AA310 LYS A 69 ILE A 75 0 SHEET 2 AA310 ALA A 159 ASN A 165 -1 O ALA A 159 N ILE A 75 SHEET 3 AA310 VAL A 100 TRP A 106 -1 N ILE A 101 O GLU A 164 SHEET 4 AA310 VAL A 114 PRO A 117 -1 O SER A 116 N ILE A 102 SHEET 5 AA310 ARG A 192 LEU A 201 1 O ALA A 195 N GLU A 115 SHEET 6 AA310 ASP A 342 GLN A 351 -1 O TRP A 349 N HIS A 194 SHEET 7 AA310 GLY A 237 CYS A 248 -1 N TYR A 245 O ALA A 344 SHEET 8 AA310 GLY A 308 PHE A 315 -1 O ILE A 312 N TYR A 244 SHEET 9 AA310 PHE A 295 ARG A 299 -1 N ARG A 299 O HIS A 311 SHEET 10 AA310 TYR A 290 SER A 291 -1 N TYR A 290 O TYR A 297 SHEET 1 AA4 8 LYS A 69 ILE A 75 0 SHEET 2 AA4 8 ALA A 159 ASN A 165 -1 O ALA A 159 N ILE A 75 SHEET 3 AA4 8 VAL A 100 TRP A 106 -1 N ILE A 101 O GLU A 164 SHEET 4 AA4 8 VAL A 114 PRO A 117 -1 O SER A 116 N ILE A 102 SHEET 5 AA4 8 ARG A 192 LEU A 201 1 O ALA A 195 N GLU A 115 SHEET 6 AA4 8 ASP A 342 GLN A 351 -1 O TRP A 349 N HIS A 194 SHEET 7 AA4 8 GLY A 237 CYS A 248 -1 N TYR A 245 O ALA A 344 SHEET 8 AA4 8 VAL A 321 PHE A 323 -1 O PHE A 323 N GLY A 237 SHEET 1 AA5 4 TYR A 228 LYS A 234 0 SHEET 2 AA5 4 SER A 326 ILE A 331 -1 O LEU A 327 N ILE A 233 SHEET 3 AA5 4 ASP A 259 ILE A 263 -1 N PHE A 262 O LYS A 328 SHEET 4 AA5 4 LEU A 271 LEU A 272 -1 O LEU A 271 N TRP A 261 LINK OE1 GLU A 35 CA CA A 503 1555 1555 2.72 LINK OE2 GLU A 35 CA CA A 503 1555 1555 2.32 LINK OE1 GLU A 35 CA CA A 503 1555 3545 2.73 LINK OE2 GLU A 35 CA CA A 503 1555 2445 2.33 LINK O GLY A 56 CA CA A 502 1555 1555 2.41 LINK OD2 ASP A 59 CA CA A 501 1555 1555 2.37 LINK OD1 ASP A 59 CA CA A 502 1555 1555 2.47 LINK OD2 ASP A 59 CA CA A 502 1555 1555 2.55 LINK O ARG A 226 CA CA A 504 1555 1555 2.27 LINK O GLU A 256 CA CA A 501 1555 3545 2.41 LINK OD1 ASP A 258 CA CA A 501 1555 3545 2.32 LINK OD2 ASP A 258 CA CA A 502 1555 3545 2.27 LINK O THR A 274 CA CA A 501 1555 3545 2.40 LINK CA CA A 501 O HOH A 621 1555 2445 2.46 LINK CA CA A 501 O HOH A 670 1555 2445 2.58 LINK CA CA A 501 O HOH A 799 1555 2445 2.48 LINK CA CA A 502 O HOH A 670 1555 2445 2.58 LINK CA CA A 502 O HOH A 708 1555 1555 2.47 LINK CA CA A 502 O HOH A 731 1555 1555 2.36 LINK CA CA A 504 O HOH A 603 1555 1555 2.50 LINK CA CA A 504 O HOH A 703 1555 1555 2.43 CISPEP 1 ALA A 89 PRO A 90 0 2.19 CISPEP 2 PRO A 141 ALA A 142 0 0.59 CRYST1 89.150 89.150 289.320 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011217 0.006476 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003456 0.00000