HEADER ISOMERASE 21-JUL-22 8AHF TITLE PAC-FRAGMENTDEL: PHOTOACTIVATED COVALENT CAPTURE OF DNA ENCODED TITLE 2 FRAGMENTS FOR HIT DISCOVERY COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.3.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 1392; SOURCE 4 GENE: GBAA_5509; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS INHIBITOR, COMPLEX, EPIMERASE, TECHNOLOGY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.BAKER,J.B.MURRAY,R.E.HUBBARD REVDAT 3 31-JAN-24 8AHF 1 REMARK REVDAT 2 07-DEC-22 8AHF 1 JRNL REVDAT 1 14-SEP-22 8AHF 0 JRNL AUTH H.MA,J.B.MURRAY,H.LUO,X.CHENG,Q.CHEN,C.SONG,C.DUAN,P.TAN, JRNL AUTH 2 L.ZHANG,J.LIU,B.A.MORGAN,J.LI,J.WAN,L.M.BAKER,W.FINNIE, JRNL AUTH 3 L.GUETZOYAN,R.HARRIS,N.HENDRICKSON,N.MATASSOVA,H.SIMMONITE, JRNL AUTH 4 J.SMITH,R.E.HUBBARD,G.LIU JRNL TITL PAC-FRAGMENTDEL - PHOTOACTIVATED COVALENT CAPTURE OF JRNL TITL 2 DNA-ENCODED FRAGMENTS FOR HIT DISCOVERY. JRNL REF RSC MED CHEM V. 13 1341 2022 JRNL REFN ESSN 2632-8682 JRNL PMID 36426238 JRNL DOI 10.1039/D2MD00197G REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 36587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.996 REMARK 3 FREE R VALUE TEST SET COUNT : 1828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08600 REMARK 3 B22 (A**2) : -0.08600 REMARK 3 B33 (A**2) : 0.17200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5978 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5564 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8108 ; 1.639 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12986 ; 0.559 ; 1.557 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 736 ; 6.794 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;13.970 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1072 ;18.920 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 946 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6696 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1068 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1210 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 96 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2838 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2950 ; 5.533 ; 4.752 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2950 ; 5.533 ; 4.752 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3684 ; 7.153 ; 7.138 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3685 ; 7.152 ; 7.138 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3028 ; 7.706 ; 5.478 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2997 ; 7.450 ; 5.426 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4424 ;10.331 ; 7.938 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4377 ;10.005 ; 7.860 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : LAUE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : AIMLESS V0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.271 REMARK 200 RESOLUTION RANGE LOW (A) : 85.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 26.80 REMARK 200 R MERGE (I) : 0.20100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.8 REMARK 200 DATA REDUNDANCY IN SHELL : 27.70 REMARK 200 R MERGE FOR SHELL (I) : 3.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5 REMARK 200 STARTING MODEL: 3BEO REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE 50 MM BIS-TRIS REMARK 280 PH 5.6 28% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.93300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.65750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.96650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.65750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.89950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.65750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.65750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.96650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.65750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.65750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.89950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.93300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -54.65750 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 54.65750 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -33.96650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 541 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 589 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 619 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER B -3 REMARK 465 PRO B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 MET A 243 CG SD CE REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 ASN B 64 CG OD1 ND2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 307 H ARG A 309 1.17 REMARK 500 HG1 THR A 284 H SER A 286 1.20 REMARK 500 HG1 THR B 284 H SER B 286 1.29 REMARK 500 OD1 ASP A 324 HG1 THR A 327 1.50 REMARK 500 HD22 ASN A 213 OD2 ASP A 285 1.58 REMARK 500 O HOH A 607 O HOH A 611 2.03 REMARK 500 OD1 ASP A 324 OG1 THR A 327 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 615 O HOH B 615 8555 1.00 REMARK 500 OE2 GLU A 89 HD1 HIS A 232 5555 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 91 64.57 37.42 REMARK 500 GLU A 122 76.88 60.21 REMARK 500 TRP A 128 15.35 57.97 REMARK 500 ASN A 165 31.52 73.13 REMARK 500 PRO A 245 -20.35 -36.11 REMARK 500 ALA A 251 -70.18 -63.42 REMARK 500 ASP A 257 48.77 -142.28 REMARK 500 GLU B 122 70.69 65.36 REMARK 500 ASN B 244 146.92 -39.64 REMARK 500 ASP B 257 73.44 -117.56 REMARK 500 ARG B 309 67.81 -116.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 98 GLY A 99 149.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 78 0.11 SIDE CHAIN REMARK 500 ARG A 360 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 8AHF A 1 371 UNP A0A348ACF3_BACAN DBREF2 8AHF A A0A348ACF3 1 371 DBREF1 8AHF B 1 371 UNP A0A348ACF3_BACAN DBREF2 8AHF B A0A348ACF3 1 371 SEQADV 8AHF SER A -3 UNP A0A348ACF EXPRESSION TAG SEQADV 8AHF PRO A -2 UNP A0A348ACF EXPRESSION TAG SEQADV 8AHF MET A -1 UNP A0A348ACF EXPRESSION TAG SEQADV 8AHF ALA A 0 UNP A0A348ACF EXPRESSION TAG SEQADV 8AHF SER B -3 UNP A0A348ACF EXPRESSION TAG SEQADV 8AHF PRO B -2 UNP A0A348ACF EXPRESSION TAG SEQADV 8AHF MET B -1 UNP A0A348ACF EXPRESSION TAG SEQADV 8AHF ALA B 0 UNP A0A348ACF EXPRESSION TAG SEQRES 1 A 375 SER PRO MET ALA MET THR GLU ARG LEU LYS VAL MET THR SEQRES 2 A 375 ILE PHE GLY THR ARG PRO GLU ALA ILE LYS MET ALA PRO SEQRES 3 A 375 LEU VAL LEU GLU LEU GLN LYS HIS PRO GLU LYS ILE GLU SEQRES 4 A 375 SER ILE VAL THR VAL THR ALA GLN HIS ARG GLN MET LEU SEQRES 5 A 375 ASP GLN VAL LEU SER ILE PHE GLY ILE THR PRO ASP PHE SEQRES 6 A 375 ASP LEU ASN ILE MET LYS ASP ARG GLN THR LEU ILE ASP SEQRES 7 A 375 ILE THR THR ARG GLY LEU GLU GLY LEU ASP LYS VAL MET SEQRES 8 A 375 LYS GLU ALA LYS PRO ASP ILE VAL LEU VAL HIS GLY ASP SEQRES 9 A 375 THR THR THR THR PHE ILE ALA SER LEU ALA ALA PHE TYR SEQRES 10 A 375 ASN GLN ILE PRO VAL GLY HIS VAL GLU ALA GLY LEU ARG SEQRES 11 A 375 THR TRP ASP LYS TYR SER PRO TYR PRO GLU GLU MET ASN SEQRES 12 A 375 ARG GLN LEU THR GLY VAL MET ALA ASP LEU HIS PHE SER SEQRES 13 A 375 PRO THR ALA LYS SER ALA THR ASN LEU GLN LYS GLU ASN SEQRES 14 A 375 LYS ASP GLU SER ARG ILE PHE ILE THR GLY ASN THR ALA SEQRES 15 A 375 ILE ASP ALA LEU LYS THR THR VAL LYS GLU THR TYR SER SEQRES 16 A 375 HIS PRO VAL LEU GLU LYS LEU GLY ASN ASN ARG LEU VAL SEQRES 17 A 375 LEU MET THR ALA HIS ARG ARG GLU ASN LEU GLY GLU PRO SEQRES 18 A 375 MET ARG ASN MET PHE ARG ALA ILE LYS ARG LEU VAL ASP SEQRES 19 A 375 LYS HIS GLU ASP VAL GLN VAL VAL TYR PRO VAL HIS MET SEQRES 20 A 375 ASN PRO VAL VAL ARG GLU THR ALA ASN ASP ILE LEU GLY SEQRES 21 A 375 ASP TYR GLY ARG ILE HIS LEU ILE GLU PRO LEU ASP VAL SEQRES 22 A 375 ILE ASP PHE HIS ASN VAL ALA ALA ARG SER TYR LEU MET SEQRES 23 A 375 LEU THR ASP SER GLY GLY VAL GLN GLU GLU ALA PRO SER SEQRES 24 A 375 LEU GLY VAL PRO VAL LEU VAL LEU ARG ASP THR THR GLU SEQRES 25 A 375 ARG PRO GLU GLY ILE GLU ALA GLY THR LEU LYS LEU ALA SEQRES 26 A 375 GLY THR ASP GLU GLU THR ILE PHE SER LEU ALA ASP GLU SEQRES 27 A 375 LEU LEU SER ASP LYS GLU ALA HIS ASP LYS MET SER LYS SEQRES 28 A 375 ALA SER ASN PRO TYR GLY ASP GLY ARG ALA SER GLU ARG SEQRES 29 A 375 ILE VAL GLU ALA ILE LEU LYS HIS PHE ASN LYS SEQRES 1 B 375 SER PRO MET ALA MET THR GLU ARG LEU LYS VAL MET THR SEQRES 2 B 375 ILE PHE GLY THR ARG PRO GLU ALA ILE LYS MET ALA PRO SEQRES 3 B 375 LEU VAL LEU GLU LEU GLN LYS HIS PRO GLU LYS ILE GLU SEQRES 4 B 375 SER ILE VAL THR VAL THR ALA GLN HIS ARG GLN MET LEU SEQRES 5 B 375 ASP GLN VAL LEU SER ILE PHE GLY ILE THR PRO ASP PHE SEQRES 6 B 375 ASP LEU ASN ILE MET LYS ASP ARG GLN THR LEU ILE ASP SEQRES 7 B 375 ILE THR THR ARG GLY LEU GLU GLY LEU ASP LYS VAL MET SEQRES 8 B 375 LYS GLU ALA LYS PRO ASP ILE VAL LEU VAL HIS GLY ASP SEQRES 9 B 375 THR THR THR THR PHE ILE ALA SER LEU ALA ALA PHE TYR SEQRES 10 B 375 ASN GLN ILE PRO VAL GLY HIS VAL GLU ALA GLY LEU ARG SEQRES 11 B 375 THR TRP ASP LYS TYR SER PRO TYR PRO GLU GLU MET ASN SEQRES 12 B 375 ARG GLN LEU THR GLY VAL MET ALA ASP LEU HIS PHE SER SEQRES 13 B 375 PRO THR ALA LYS SER ALA THR ASN LEU GLN LYS GLU ASN SEQRES 14 B 375 LYS ASP GLU SER ARG ILE PHE ILE THR GLY ASN THR ALA SEQRES 15 B 375 ILE ASP ALA LEU LYS THR THR VAL LYS GLU THR TYR SER SEQRES 16 B 375 HIS PRO VAL LEU GLU LYS LEU GLY ASN ASN ARG LEU VAL SEQRES 17 B 375 LEU MET THR ALA HIS ARG ARG GLU ASN LEU GLY GLU PRO SEQRES 18 B 375 MET ARG ASN MET PHE ARG ALA ILE LYS ARG LEU VAL ASP SEQRES 19 B 375 LYS HIS GLU ASP VAL GLN VAL VAL TYR PRO VAL HIS MET SEQRES 20 B 375 ASN PRO VAL VAL ARG GLU THR ALA ASN ASP ILE LEU GLY SEQRES 21 B 375 ASP TYR GLY ARG ILE HIS LEU ILE GLU PRO LEU ASP VAL SEQRES 22 B 375 ILE ASP PHE HIS ASN VAL ALA ALA ARG SER TYR LEU MET SEQRES 23 B 375 LEU THR ASP SER GLY GLY VAL GLN GLU GLU ALA PRO SER SEQRES 24 B 375 LEU GLY VAL PRO VAL LEU VAL LEU ARG ASP THR THR GLU SEQRES 25 B 375 ARG PRO GLU GLY ILE GLU ALA GLY THR LEU LYS LEU ALA SEQRES 26 B 375 GLY THR ASP GLU GLU THR ILE PHE SER LEU ALA ASP GLU SEQRES 27 B 375 LEU LEU SER ASP LYS GLU ALA HIS ASP LYS MET SER LYS SEQRES 28 B 375 ALA SER ASN PRO TYR GLY ASP GLY ARG ALA SER GLU ARG SEQRES 29 B 375 ILE VAL GLU ALA ILE LEU LYS HIS PHE ASN LYS HET M3U A 401 39 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET M3U B 401 39 HET SO4 B 402 5 HET SO4 B 403 5 HETNAM M3U (2~{R},4~{S})-4-[BIS(FLUORANYL)METHOXY]-~{N}-METHYL-1- HETNAM 2 M3U (2~{H}-PYRAZOLO[4,3-B]PYRIDIN-6-YLCARBONYL) HETNAM 3 M3U PYRROLIDINE-2-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 3 M3U 2(C14 H15 F2 N5 O3) FORMUL 4 SO4 8(O4 S 2-) FORMUL 13 HOH *248(H2 O) HELIX 1 AA1 THR A 13 GLN A 28 1 16 HELIX 2 AA2 ARG A 45 GLY A 56 1 12 HELIX 3 AA3 THR A 71 LYS A 91 1 21 HELIX 4 AA4 THR A 101 ASN A 114 1 14 HELIX 5 AA5 PRO A 135 ALA A 147 1 13 HELIX 6 AA6 THR A 154 GLU A 164 1 11 HELIX 7 AA7 ASP A 167 SER A 169 5 3 HELIX 8 AA8 ASN A 176 VAL A 186 1 11 HELIX 9 AA9 HIS A 192 GLY A 199 1 8 HELIX 10 AB1 HIS A 209 LEU A 214 1 6 HELIX 11 AB2 GLY A 215 HIS A 232 1 18 HELIX 12 AB3 ASN A 244 GLY A 256 1 13 HELIX 13 AB4 ASP A 268 ALA A 277 1 10 HELIX 14 AB5 SER A 286 ALA A 293 1 8 HELIX 15 AB6 PRO A 294 GLY A 297 5 4 HELIX 16 AB7 ARG A 309 ALA A 315 1 7 HELIX 17 AB8 ASP A 324 ASP A 338 1 15 HELIX 18 AB9 ASP A 338 ALA A 348 1 11 HELIX 19 AC1 ARG A 356 PHE A 369 1 14 HELIX 20 AC2 PRO B 15 GLN B 28 1 14 HELIX 21 AC3 ARG B 45 PHE B 55 1 11 HELIX 22 AC4 THR B 71 LYS B 91 1 21 HELIX 23 AC5 THR B 101 TYR B 113 1 13 HELIX 24 AC6 PRO B 135 ALA B 147 1 13 HELIX 25 AC7 THR B 154 GLU B 164 1 11 HELIX 26 AC8 ASP B 167 SER B 169 5 3 HELIX 27 AC9 ASN B 176 VAL B 186 1 11 HELIX 28 AD1 HIS B 192 LEU B 198 1 7 HELIX 29 AD2 ARG B 210 LEU B 214 5 5 HELIX 30 AD3 GLY B 215 HIS B 232 1 18 HELIX 31 AD4 ASN B 244 GLY B 256 1 13 HELIX 32 AD5 ASP B 268 ALA B 277 1 10 HELIX 33 AD6 SER B 286 ALA B 293 1 8 HELIX 34 AD7 PRO B 294 GLY B 297 5 4 HELIX 35 AD8 ARG B 309 ALA B 315 1 7 HELIX 36 AD9 ASP B 324 ASP B 338 1 15 HELIX 37 AE1 ASP B 338 ALA B 348 1 11 HELIX 38 AE2 ARG B 356 PHE B 369 1 14 SHEET 1 AA1 7 PHE A 61 ASP A 62 0 SHEET 2 AA1 7 ILE A 34 VAL A 40 1 N VAL A 40 O PHE A 61 SHEET 3 AA1 7 LEU A 5 PHE A 11 1 N VAL A 7 O ILE A 37 SHEET 4 AA1 7 ILE A 94 HIS A 98 1 O LEU A 96 N MET A 8 SHEET 5 AA1 7 VAL A 118 VAL A 121 1 O VAL A 121 N VAL A 97 SHEET 6 AA1 7 LEU A 149 SER A 152 1 O LEU A 149 N HIS A 120 SHEET 7 AA1 7 ILE A 171 ILE A 173 1 O PHE A 172 N HIS A 150 SHEET 1 AA2 6 ILE A 261 ILE A 264 0 SHEET 2 AA2 6 VAL A 235 PRO A 240 1 N VAL A 237 O HIS A 262 SHEET 3 AA2 6 ARG A 202 MET A 206 1 N MET A 206 O VAL A 238 SHEET 4 AA2 6 LEU A 281 THR A 284 1 O LEU A 281 N LEU A 205 SHEET 5 AA2 6 VAL A 300 VAL A 302 1 O LEU A 301 N MET A 282 SHEET 6 AA2 6 LEU A 318 LEU A 320 1 O LYS A 319 N VAL A 302 SHEET 1 AA3 7 PHE B 61 ASP B 62 0 SHEET 2 AA3 7 ILE B 34 VAL B 40 1 N VAL B 40 O PHE B 61 SHEET 3 AA3 7 LEU B 5 PHE B 11 1 N VAL B 7 O ILE B 37 SHEET 4 AA3 7 ILE B 94 HIS B 98 1 O LEU B 96 N MET B 8 SHEET 5 AA3 7 VAL B 118 VAL B 121 1 O VAL B 121 N VAL B 97 SHEET 6 AA3 7 LEU B 149 SER B 152 1 O LEU B 149 N HIS B 120 SHEET 7 AA3 7 ILE B 171 ILE B 173 1 O PHE B 172 N HIS B 150 SHEET 1 AA4 6 ILE B 261 ILE B 264 0 SHEET 2 AA4 6 VAL B 235 PRO B 240 1 N VAL B 237 O HIS B 262 SHEET 3 AA4 6 ARG B 202 THR B 207 1 N MET B 206 O VAL B 238 SHEET 4 AA4 6 LEU B 281 THR B 284 1 O LEU B 281 N LEU B 205 SHEET 5 AA4 6 VAL B 300 VAL B 302 1 O LEU B 301 N MET B 282 SHEET 6 AA4 6 LEU B 318 LEU B 320 1 O LYS B 319 N VAL B 302 CISPEP 1 SER A 132 PRO A 133 0 -7.82 CISPEP 2 TYR A 134 PRO A 135 0 6.82 CISPEP 3 SER B 132 PRO B 133 0 1.50 CISPEP 4 TYR B 134 PRO B 135 0 -3.28 CRYST1 109.315 109.315 135.866 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009148 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007360 0.00000