HEADER TRANSFERASE 21-JUL-22 8AHG TITLE PAC-FRAGMENTDEL: PHOTOACTIVATED COVALENT CAPTURE OF DNA ENCODED TITLE 2 FRAGMENTS FOR HIT DISCOVERY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P21-ACTIVATED KINASE 4,PAK-4; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK4, KIAA1142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN KINASE, PAK4, ATP-BINDING, TRANSFERASE, TECHNOLOGY EXPDTA X-RAY DIFFRACTION AUTHOR L.M.BAKER,J.B.MURRAY,R.E.HUBBARD REVDAT 3 31-JAN-24 8AHG 1 REMARK REVDAT 2 07-DEC-22 8AHG 1 JRNL REVDAT 1 14-SEP-22 8AHG 0 JRNL AUTH H.MA,J.B.MURRAY,H.LUO,X.CHENG,Q.CHEN,C.SONG,C.DUAN,P.TAN, JRNL AUTH 2 L.ZHANG,J.LIU,B.A.MORGAN,J.LI,J.WAN,L.M.BAKER,W.FINNIE, JRNL AUTH 3 L.GUETZOYAN,R.HARRIS,N.HENDRICKSON,N.MATASSOVA,H.SIMMONITE, JRNL AUTH 4 J.SMITH,R.E.HUBBARD,G.LIU JRNL TITL PAC-FRAGMENTDEL - PHOTOACTIVATED COVALENT CAPTURE OF JRNL TITL 2 DNA-ENCODED FRAGMENTS FOR HIT DISCOVERY. JRNL REF RSC MED CHEM V. 13 1341 2022 JRNL REFN ESSN 2632-8682 JRNL PMID 36426238 JRNL DOI 10.1039/D2MD00197G REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0349 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 27811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.987 REMARK 3 FREE R VALUE TEST SET COUNT : 1387 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 720 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05100 REMARK 3 B22 (A**2) : -0.05100 REMARK 3 B33 (A**2) : 0.10300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.598 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2389 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2268 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3246 ; 1.539 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5285 ; 0.524 ; 1.551 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 7.183 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ; 6.122 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;16.742 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2699 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 447 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 528 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 56 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1184 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1177 ; 3.397 ; 3.982 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1177 ; 3.394 ; 3.982 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1471 ; 4.159 ; 5.960 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1472 ; 4.159 ; 5.963 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1212 ; 4.244 ; 4.434 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1213 ; 4.242 ; 4.435 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1772 ; 5.920 ; 6.480 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1773 ; 5.919 ; 6.481 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : LAUE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : AIMLESS V0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27812 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.885 REMARK 200 RESOLUTION RANGE LOW (A) : 58.496 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 26.40 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.6 REMARK 200 DATA REDUNDANCY IN SHELL : 27.20 REMARK 200 R MERGE FOR SHELL (I) : 3.05800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2BVA REMARK 200 REMARK 200 REMARK: PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M NA/K TARTRATE 0.1M TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.39500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.91100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.91100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.19750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.91100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.91100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 135.59250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.91100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.91100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.19750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.91100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.91100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 135.59250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 295 REMARK 465 PRO A 296 REMARK 465 LEU A 297 REMARK 465 GLY A 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 534 CD NE CZ NH1 NH2 REMARK 470 LYS A 536 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 438 H ASP A 440 1.30 REMARK 500 HD1 HIS A 569 H PHE A 571 1.32 REMARK 500 HE ARG A 591 O HOH A 709 1.57 REMARK 500 O HOH A 785 O HOH A 885 2.06 REMARK 500 O ARG A 528 NH2 ARG A 555 2.11 REMARK 500 O HOH A 859 O HOH A 870 2.14 REMARK 500 OH TYR A 515 O HOH A 701 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 415 HH12 ARG A 489 8565 1.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 341 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 341 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 489 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 440 46.75 -140.67 REMARK 500 LEU A 553 59.06 -90.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 341 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8AHG A 300 591 UNP O96013 PAK4_HUMAN 300 591 SEQADV 8AHG GLY A 295 UNP O96013 EXPRESSION TAG SEQADV 8AHG PRO A 296 UNP O96013 EXPRESSION TAG SEQADV 8AHG LEU A 297 UNP O96013 EXPRESSION TAG SEQADV 8AHG GLY A 298 UNP O96013 EXPRESSION TAG SEQADV 8AHG SER A 299 UNP O96013 EXPRESSION TAG SEQADV 8AHG ALA A 310 UNP O96013 LEU 310 ENGINEERED MUTATION SEQRES 1 A 297 GLY PRO LEU GLY SER SER HIS GLU GLN PHE ARG ALA ALA SEQRES 2 A 297 LEU GLN ALA VAL VAL ASP PRO GLY ASP PRO ARG SER TYR SEQRES 3 A 297 LEU ASP ASN PHE ILE LYS ILE GLY GLU GLY SER THR GLY SEQRES 4 A 297 ILE VAL CYS ILE ALA THR VAL ARG SER SER GLY LYS LEU SEQRES 5 A 297 VAL ALA VAL LYS LYS MET ASP LEU ARG LYS GLN GLN ARG SEQRES 6 A 297 ARG GLU LEU LEU PHE ASN GLU VAL VAL ILE MET ARG ASP SEQRES 7 A 297 TYR GLN HIS GLU ASN VAL VAL GLU MET TYR ASN SER TYR SEQRES 8 A 297 LEU VAL GLY ASP GLU LEU TRP VAL VAL MET GLU PHE LEU SEQRES 9 A 297 GLU GLY GLY ALA LEU THR ASP ILE VAL THR HIS THR ARG SEQRES 10 A 297 MET ASN GLU GLU GLN ILE ALA ALA VAL CYS LEU ALA VAL SEQRES 11 A 297 LEU GLN ALA LEU SER VAL LEU HIS ALA GLN GLY VAL ILE SEQRES 12 A 297 HIS ARG ASP ILE LYS SER ASP SER ILE LEU LEU THR HIS SEQRES 13 A 297 ASP GLY ARG VAL LYS LEU SER ASP PHE GLY PHE CYS ALA SEQRES 14 A 297 GLN VAL SER LYS GLU VAL PRO ARG ARG LYS SEP LEU VAL SEQRES 15 A 297 GLY THR PRO TYR TRP MET ALA PRO GLU LEU ILE SER ARG SEQRES 16 A 297 LEU PRO TYR GLY PRO GLU VAL ASP ILE TRP SER LEU GLY SEQRES 17 A 297 ILE MET VAL ILE GLU MET VAL ASP GLY GLU PRO PRO TYR SEQRES 18 A 297 PHE ASN GLU PRO PRO LEU LYS ALA MET LYS MET ILE ARG SEQRES 19 A 297 ASP ASN LEU PRO PRO ARG LEU LYS ASN LEU HIS LYS VAL SEQRES 20 A 297 SER PRO SER LEU LYS GLY PHE LEU ASP ARG LEU LEU VAL SEQRES 21 A 297 ARG ASP PRO ALA GLN ARG ALA THR ALA ALA GLU LEU LEU SEQRES 22 A 297 LYS HIS PRO PHE LEU ALA LYS ALA GLY PRO PRO ALA SER SEQRES 23 A 297 ILE VAL PRO LEU MET ARG GLN ASN ARG THR ARG MODRES 8AHG SEP A 474 SER MODIFIED RESIDUE HET SEP A 474 14 HET M4I A 601 30 HETNAM SEP PHOSPHOSERINE HETNAM M4I ~{N}-METHYL-3-PROPAN-2-YL-1~{H}-PYRAZOLO[3,4- HETNAM 2 M4I C]PYRIDINE-4-CARBOXAMIDE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 M4I C11 H14 N4 O FORMUL 3 HOH *210(H2 O) HELIX 1 AA1 SER A 299 VAL A 312 1 14 HELIX 2 AA2 ASP A 316 SER A 319 5 4 HELIX 3 AA3 ARG A 359 LEU A 362 5 4 HELIX 4 AA4 LEU A 363 TYR A 373 1 11 HELIX 5 AA5 LEU A 403 THR A 410 1 8 HELIX 6 AA6 ASN A 413 GLN A 434 1 22 HELIX 7 AA7 LYS A 442 ASP A 444 5 3 HELIX 8 AA8 THR A 478 MET A 482 5 5 HELIX 9 AA9 ALA A 483 SER A 488 1 6 HELIX 10 AB1 PRO A 494 GLY A 511 1 18 HELIX 11 AB2 PRO A 519 ASN A 530 1 12 HELIX 12 AB3 ASN A 537 VAL A 541 5 5 HELIX 13 AB4 SER A 542 LEU A 553 1 12 HELIX 14 AB5 THR A 562 LEU A 567 1 6 HELIX 15 AB6 LYS A 568 ALA A 575 5 8 HELIX 16 AB7 PRO A 577 LEU A 584 5 8 HELIX 17 AB8 MET A 585 THR A 590 1 6 SHEET 1 AA1 5 LEU A 321 GLU A 329 0 SHEET 2 AA1 5 ILE A 334 VAL A 340 -1 O VAL A 335 N ILE A 327 SHEET 3 AA1 5 LEU A 346 ASP A 353 -1 O LYS A 351 N ILE A 334 SHEET 4 AA1 5 GLU A 390 MET A 395 -1 O MET A 395 N ALA A 348 SHEET 5 AA1 5 MET A 381 VAL A 387 -1 N VAL A 387 O GLU A 390 SHEET 1 AA2 3 GLY A 401 ALA A 402 0 SHEET 2 AA2 3 ILE A 446 LEU A 448 -1 O LEU A 448 N GLY A 401 SHEET 3 AA2 3 VAL A 454 LEU A 456 -1 O LYS A 455 N LEU A 447 SHEET 1 AA3 2 VAL A 436 ILE A 437 0 SHEET 2 AA3 2 ALA A 463 GLN A 464 -1 O ALA A 463 N ILE A 437 LINK C LYS A 473 N SEP A 474 1555 1555 1.35 LINK C SEP A 474 N LEU A 475 1555 1555 1.33 CRYST1 61.822 61.822 180.790 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005531 0.00000