HEADER TRANSFERASE 22-JUL-22 8AHU TITLE CRYSTAL STRUCTURE OF D-AMINO ACID AMINOTRENSFERASE FROM TITLE 2 HALISCOMENOBACTER HYDROSSIS COMPLEXED WITH D-CYCLOSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE CLASS IV; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALISCOMENOBACTER HYDROSSIS; SOURCE 3 ORGANISM_TAXID: 2350; SOURCE 4 STRAIN: ATCC 27775 / DSM 1100 / LMG 10767 / O; SOURCE 5 GENE: HALHY_2446; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSAMINASE, DAAT, AMINOTRANSFERASE, COMPLEX, D-CYCLOSERINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.O.MATYUTA,K.M.BOYKO,A.Y.NIKOLAEVA,A.K.BAKUNOVA,V.O.POPOV, AUTHOR 2 E.Y.BEZSUDNOVA REVDAT 4 27-MAR-24 8AHU 1 JRNL REVDAT 3 07-FEB-24 8AHU 1 REMARK REVDAT 2 31-MAY-23 8AHU 1 JRNL REVDAT 1 31-AUG-22 8AHU 0 JRNL AUTH A.K.BAKUNOVA,I.O.MATYUTA,A.Y.NIKOLAEVA,K.M.BOYKO,V.O.POPOV, JRNL AUTH 2 E.Y.BEZSUDNOVA JRNL TITL MECHANISM OF D-CYCLOSERINE INHIBITION OF D-AMINO ACID JRNL TITL 2 TRANSAMINASE FROM HALISCOMENOBACTER HYDROSSIS. JRNL REF BIOCHEMISTRY MOSC. V. 88 687 2023 JRNL REFN ISSN 0006-2979 JRNL PMID 37331714 JRNL DOI 10.1134/S0006297923050115 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 58305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 184 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2398 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2286 ; 0.003 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3260 ; 2.006 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5247 ; 1.529 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 7.015 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;31.005 ;20.922 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;13.696 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.059 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2729 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 584 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7408 -0.1727 15.2983 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.0138 REMARK 3 T33: 0.0211 T12: 0.0040 REMARK 3 T13: -0.0179 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4208 L22: 0.3447 REMARK 3 L33: 0.3710 L12: -0.3589 REMARK 3 L13: 0.1363 L23: -0.2212 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.0033 S13: 0.0012 REMARK 3 S21: 0.0049 S22: 0.0137 S23: 0.0030 REMARK 3 S31: -0.0388 S32: -0.0258 S33: -0.0224 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8AHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 42.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 7P7X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.8, 16-22% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.45100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.45100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 76.34500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.02876 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 10 CD OE1 NE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 ARG A 222 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 138 CD GLU A 138 OE1 0.076 REMARK 500 GLU A 138 CD GLU A 138 OE2 0.073 REMARK 500 GLU A 176 CD GLU A 176 OE2 -0.074 REMARK 500 GLU A 213 CD GLU A 213 OE1 0.095 REMARK 500 GLU A 213 CD GLU A 213 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 102 -53.52 -152.84 REMARK 500 VAL A 105 -153.84 -137.12 REMARK 500 PHE A 135 148.02 -174.78 REMARK 500 ARG A 175 -86.88 -116.34 REMARK 500 ARG A 179 24.47 -140.42 REMARK 500 ASP A 250 -130.42 64.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 228 -10.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 8AHU A 1 281 UNP F4KWH0 F4KWH0_HALH1 1 281 SEQADV 8AHU GLY A -1 UNP F4KWH0 EXPRESSION TAG SEQADV 8AHU HIS A 0 UNP F4KWH0 EXPRESSION TAG SEQRES 1 A 283 GLY HIS MET ILE LYS TYR TYR ASN ILE ASN GLY GLN GLN SEQRES 2 A 283 VAL PRO VAL GLU ASN ALA THR LEU HIS VAL SER ASP LEU SEQRES 3 A 283 SER ILE LEU ARG GLY TYR GLY ILE PHE ASP TYR PHE LEU SEQRES 4 A 283 ALA ARG GLU GLY HIS PRO LEU PHE LEU ASP ASP TYR LEU SEQRES 5 A 283 ASN ARG PHE TYR ARG SER ALA ALA GLU LEU TYR LEU GLU SEQRES 6 A 283 ILE PRO PHE ASP LYS ALA GLU LEU ARG ARG GLN ILE TYR SEQRES 7 A 283 ALA LEU LEU GLN ALA ASN GLU VAL ARG GLU ALA GLY ILE SEQRES 8 A 283 ARG LEU VAL LEU THR GLY GLY TYR SER PRO ASP GLY TYR SEQRES 9 A 283 THR PRO VAL ASN PRO ASN LEU LEU ILE MET MET TYR ASP SEQRES 10 A 283 LEU PRO ALA SER ALA TRP GLU PHE SER ALA GLN GLY ILE SEQRES 11 A 283 LYS ILE ILE THR HIS PRO PHE GLN ARG GLU LEU PRO GLU SEQRES 12 A 283 VAL LYS THR ILE ASN TYR SER THR GLY ILE ARG MET LEU SEQRES 13 A 283 LYS THR ILE LYS GLU ARG GLY ALA THR ASP LEU ILE TYR SEQRES 14 A 283 VAL ASP GLN GLY GLU TRP ILE ARG GLU SER ALA ARG SER SEQRES 15 A 283 ASN PHE PHE LEU VAL MET PRO ASP ASN THR ILE VAL THR SEQRES 16 A 283 ALA ASP GLU LYS ILE LEU TRP GLY ILE THR ARG ARG GLN SEQRES 17 A 283 VAL ILE ASP ALA ALA ARG GLU ALA GLY TYR ALA VAL GLU SEQRES 18 A 283 GLU ARG ARG ILE HIS ILE THR GLU LEU ASP GLN ALA ARG SEQRES 19 A 283 GLU ALA PHE PHE THR SER THR ILE LYS GLY VAL MET ALA SEQRES 20 A 283 ILE GLY GLN ILE ASP ASP ARG VAL PHE GLY ASP GLY THR SEQRES 21 A 283 ILE GLY LYS VAL THR GLN GLU LEU GLN ASP LEU PHE VAL SEQRES 22 A 283 GLY LYS VAL LYS ALA TYR LEU GLU THR CYS HET GOL A 301 6 HET LCS A 302 29 HETNAM GOL GLYCEROL HETNAM LCS [5-HYDROXY-6-METHYL-4-({[(4E)-3-OXO-1,2-OXAZOLIDIN-4- HETNAM 2 LCS YLIDENE]AMINO}METHYL)PYRIDIN-3-YL]METHYL DIHYDROGEN HETNAM 3 LCS PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 LCS C11 H14 N3 O7 P FORMUL 4 HOH *267(H2 O) HELIX 1 AA1 GLU A 15 ALA A 17 5 3 HELIX 2 AA2 ASP A 23 GLY A 29 1 7 HELIX 3 AA3 PHE A 45 LEU A 60 1 16 HELIX 4 AA4 ASP A 67 ASN A 82 1 16 HELIX 5 AA5 TYR A 147 MET A 153 1 7 HELIX 6 AA6 MET A 153 ARG A 160 1 8 HELIX 7 AA7 GLN A 170 GLU A 172 5 3 HELIX 8 AA8 GLY A 201 ALA A 214 1 14 HELIX 9 AA9 HIS A 224 ALA A 231 5 8 HELIX 10 AB1 GLY A 260 THR A 280 1 21 SHEET 1 AA1 6 GLN A 10 PRO A 13 0 SHEET 2 AA1 6 TYR A 4 ILE A 7 -1 N TYR A 5 O VAL A 12 SHEET 3 AA1 6 LEU A 109 ASP A 115 -1 O ILE A 111 N ASN A 6 SHEET 4 AA1 6 ALA A 87 THR A 94 -1 N VAL A 92 O LEU A 110 SHEET 5 AA1 6 GLY A 31 ARG A 39 -1 N ILE A 32 O LEU A 93 SHEET 6 AA1 6 HIS A 42 PRO A 43 -1 O HIS A 42 N ARG A 39 SHEET 1 AA2 8 TRP A 173 ILE A 174 0 SHEET 2 AA2 8 ASP A 164 ASP A 169 -1 N ASP A 169 O TRP A 173 SHEET 3 AA2 8 ILE A 128 PRO A 134 1 N HIS A 133 O VAL A 168 SHEET 4 AA2 8 GLY A 242 ILE A 249 1 O GLN A 248 N ILE A 130 SHEET 5 AA2 8 GLU A 233 SER A 238 -1 N SER A 238 O GLY A 242 SHEET 6 AA2 8 ASN A 181 VAL A 185 -1 N PHE A 183 O PHE A 235 SHEET 7 AA2 8 ILE A 191 THR A 193 -1 O VAL A 192 N LEU A 184 SHEET 8 AA2 8 VAL A 218 GLU A 220 1 O GLU A 219 N ILE A 191 SHEET 1 AA3 5 TRP A 173 ILE A 174 0 SHEET 2 AA3 5 ASP A 164 ASP A 169 -1 N ASP A 169 O TRP A 173 SHEET 3 AA3 5 ILE A 128 PRO A 134 1 N HIS A 133 O VAL A 168 SHEET 4 AA3 5 GLY A 242 ILE A 249 1 O GLN A 248 N ILE A 130 SHEET 5 AA3 5 ARG A 252 VAL A 253 -1 O ARG A 252 N ILE A 249 CRYST1 86.902 71.940 53.089 90.00 101.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011507 0.000000 0.002335 0.00000 SCALE2 0.000000 0.013900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019220 0.00000