HEADER STRUCTURAL PROTEIN 25-JUL-22 8AHY TITLE X-RAY STRUCTURE OF HUMAN NCS-1 BOUND TO RIC-8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL CALCIUM SENSOR 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: NCS-1,FREQUENIN HOMOLOG,FREQUENIN-LIKE PROTEIN,FREQUENIN- COMPND 5 LIKE UBIQUITOUS PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SYNEMBRYN-A; COMPND 9 CHAIN: P; COMPND 10 SYNONYM: PROTEIN RIC-8A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCS1, FLUP, FREQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: NORWAY RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS NCS-1, RIC-8A, COMPLEX, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MUNOZ-REYES,M.J.SANCHEZ-BARRENA REVDAT 2 10-JAN-24 8AHY 1 JRNL REVDAT 1 13-DEC-23 8AHY 0 JRNL AUTH D.MUNOZ-REYES,L.J.MCCLELLAND,S.ARROYO-UREA,S.SANCHEZ-YEPES, JRNL AUTH 2 J.SABIN,S.PEREZ-SUAREZ,M.MENENDEZ,A.MANSILLA, JRNL AUTH 3 J.GARCIA-NAFRIA,S.SPRANG,M.J.SANCHEZ-BARRENA JRNL TITL THE NEURONAL CALCIUM SENSOR NCS-1 REGULATES THE JRNL TITL 2 PHOSPHORYLATION STATE AND ACTIVITY OF THE G ALPHA CHAPERONE JRNL TITL 3 AND GEF RIC-8A. JRNL REF ELIFE V. 12 2023 JRNL REFN ESSN 2050-084X JRNL PMID 38018500 JRNL DOI 10.7554/ELIFE.86151 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 40563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.2400 - 4.1100 1.00 3136 145 0.1802 0.2175 REMARK 3 2 4.1100 - 3.2600 1.00 3122 160 0.1554 0.1795 REMARK 3 3 3.2600 - 2.8500 1.00 3092 173 0.1798 0.1960 REMARK 3 4 2.8500 - 2.5900 1.00 3101 172 0.1813 0.2182 REMARK 3 5 2.5900 - 2.4000 1.00 3172 140 0.1712 0.1517 REMARK 3 6 2.4000 - 2.2600 1.00 3072 169 0.1817 0.2289 REMARK 3 7 2.2600 - 2.1500 1.00 3165 152 0.1723 0.1843 REMARK 3 8 2.1500 - 2.0500 1.00 3141 143 0.2222 0.1985 REMARK 3 9 2.0500 - 1.9700 1.00 3113 148 0.2214 0.2367 REMARK 3 10 1.9700 - 1.9100 0.98 3017 170 0.2468 0.2837 REMARK 3 11 1.9100 - 1.8500 0.88 2743 147 0.2679 0.2412 REMARK 3 12 1.8500 - 1.7900 0.74 2324 116 0.2983 0.3095 REMARK 3 13 1.7900 - 1.7500 0.59 1809 97 0.3233 0.3022 REMARK 3 14 1.7500 - 1.7000 0.19 598 26 0.3465 0.4500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1676 REMARK 3 ANGLE : 0.774 2254 REMARK 3 CHIRALITY : 0.052 235 REMARK 3 PLANARITY : 0.007 295 REMARK 3 DIHEDRAL : 8.626 230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0542 38.7529 21.2783 REMARK 3 T TENSOR REMARK 3 T11: 0.3542 T22: 0.2678 REMARK 3 T33: 0.7707 T12: -0.0562 REMARK 3 T13: -0.0515 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 8.2091 L22: 3.4684 REMARK 3 L33: 4.7932 L12: 2.1863 REMARK 3 L13: 2.2744 L23: 0.9571 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: 0.4802 S13: 1.9104 REMARK 3 S21: 0.3679 S22: 0.0883 S23: -1.1058 REMARK 3 S31: -0.5223 S32: 0.6586 S33: 0.1291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3557 22.7845 27.7063 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.3263 REMARK 3 T33: 0.1412 T12: 0.0364 REMARK 3 T13: 0.0120 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.1387 L22: 1.1761 REMARK 3 L33: 2.1700 L12: 0.3716 REMARK 3 L13: 0.1531 L23: 0.5586 REMARK 3 S TENSOR REMARK 3 S11: -0.1006 S12: -0.6191 S13: -0.0091 REMARK 3 S21: 0.3308 S22: 0.0348 S23: -0.0925 REMARK 3 S31: 0.2843 S32: 0.2059 S33: 0.0874 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1861 20.1718 18.2735 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1923 REMARK 3 T33: 0.1450 T12: 0.0122 REMARK 3 T13: 0.0186 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.1652 L22: 2.1990 REMARK 3 L33: 1.5060 L12: -0.2076 REMARK 3 L13: 0.3023 L23: 1.4866 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: -0.0585 S13: 0.1525 REMARK 3 S21: 0.0737 S22: 0.1349 S23: -0.1531 REMARK 3 S31: 0.1014 S32: 0.2167 S33: -0.0568 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5737 5.8652 11.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.1508 REMARK 3 T33: 0.2101 T12: 0.0035 REMARK 3 T13: 0.0403 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.8483 L22: 1.5422 REMARK 3 L33: 0.7024 L12: -0.1695 REMARK 3 L13: -0.0586 L23: 0.6411 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.1172 S13: -0.4389 REMARK 3 S21: 0.1636 S22: -0.0666 S23: 0.1633 REMARK 3 S31: 0.1400 S32: 0.0652 S33: 0.0541 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7896 6.0555 2.2608 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.2732 REMARK 3 T33: 0.3387 T12: -0.0385 REMARK 3 T13: 0.0006 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 2.9407 L22: 2.5958 REMARK 3 L33: 3.5323 L12: 0.6554 REMARK 3 L13: -1.0836 L23: 0.4724 REMARK 3 S TENSOR REMARK 3 S11: -0.1006 S12: 0.2717 S13: -0.2677 REMARK 3 S21: 0.0622 S22: -0.0733 S23: 0.7064 REMARK 3 S31: 0.3468 S32: -0.5619 S33: 0.1530 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 402 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6120 5.4127 22.6225 REMARK 3 T TENSOR REMARK 3 T11: 1.0219 T22: 0.9279 REMARK 3 T33: 1.2475 T12: 0.1294 REMARK 3 T13: -0.0870 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 2.3204 L22: 1.4037 REMARK 3 L33: 2.3290 L12: 1.8175 REMARK 3 L13: -2.3206 L23: -1.8091 REMARK 3 S TENSOR REMARK 3 S11: -0.3287 S12: -0.4110 S13: -0.3299 REMARK 3 S21: 0.5932 S22: -0.1457 S23: 0.4258 REMARK 3 S31: 0.1466 S32: -0.4540 S33: 0.2028 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 407 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0535 6.7171 13.7286 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.1822 REMARK 3 T33: 0.2029 T12: -0.0018 REMARK 3 T13: 0.0790 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 7.6835 L22: 3.0003 REMARK 3 L33: 1.5546 L12: 0.2295 REMARK 3 L13: -1.2801 L23: 1.5470 REMARK 3 S TENSOR REMARK 3 S11: -0.2751 S12: -0.5447 S13: -0.3938 REMARK 3 S21: 0.0906 S22: 0.0432 S23: 0.1639 REMARK 3 S31: 0.4745 S32: 0.0687 S33: 0.1438 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 414 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8402 16.9240 23.5815 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.2289 REMARK 3 T33: 0.2281 T12: 0.0178 REMARK 3 T13: 0.0696 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.8916 L22: 7.1315 REMARK 3 L33: 7.7407 L12: 1.8996 REMARK 3 L13: 1.3531 L23: 4.7415 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: -0.5570 S13: 0.1848 REMARK 3 S21: 0.8673 S22: -0.2346 S23: 0.5767 REMARK 3 S31: 0.4936 S32: -0.2062 S33: 0.2377 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292124167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979263 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 52.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 100 MM SODIUM ACETATE REMARK 280 PH 4.6, 100 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.64850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.31750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.31750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.82425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.31750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.31750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.47275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.31750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.31750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.82425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.31750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.31750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.47275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.64850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 392 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 PRO B 177 REMARK 465 SER P 400 REMARK 465 GLU P 401 REMARK 465 PRO P 430 REMARK 465 GLU P 431 REMARK 465 GLY P 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS B 9 O HOH B 306 1.58 REMARK 500 OE1 GLU B 14 O HOH B 301 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL P 403 CB VAL P 403 CG2 -0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE B 205 REMARK 610 1PE P 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 OD1 REMARK 620 2 ASN B 75 OD1 82.8 REMARK 620 3 ASP B 77 OD1 82.7 78.7 REMARK 620 4 ARG B 79 O 82.4 151.9 75.9 REMARK 620 5 GLU B 81 OE1 173.8 103.2 96.4 91.4 REMARK 620 6 GLU B 84 OE1 108.8 128.0 151.2 79.6 69.2 REMARK 620 7 GLU B 84 OE2 95.8 75.2 153.8 130.0 87.8 53.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 ASP B 111 OD1 75.6 REMARK 620 3 ASP B 113 OD1 83.7 74.5 REMARK 620 4 TYR B 115 O 82.0 147.3 79.7 REMARK 620 5 GLU B 120 OE1 112.5 130.2 152.1 80.4 REMARK 620 6 GLU B 120 OE2 100.8 77.9 149.9 130.3 52.4 REMARK 620 7 HOH B 384 O 165.4 95.0 82.9 101.4 82.1 88.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 111 OD2 REMARK 620 2 ASP B 111 OD2 0.0 REMARK 620 3 HOH B 320 O 87.6 87.6 REMARK 620 4 HOH B 320 O 90.7 90.7 174.7 REMARK 620 5 HOH B 355 O 84.7 84.7 88.3 86.6 REMARK 620 6 HOH B 355 O 84.8 84.8 87.9 87.0 0.4 REMARK 620 7 HOH B 392 O 93.9 93.9 93.2 91.8 177.9 178.2 REMARK 620 8 HOH B 392 O 93.9 93.9 93.2 91.8 177.9 178.2 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 157 OD1 REMARK 620 2 ASN B 159 OD1 84.2 REMARK 620 3 ASP B 161 OD1 80.6 78.7 REMARK 620 4 LYS B 163 O 86.4 153.5 75.3 REMARK 620 5 GLU B 168 OE1 109.7 124.4 154.6 82.1 REMARK 620 6 GLU B 168 OE2 95.0 74.0 152.6 131.6 52.0 REMARK 620 7 HOH B 318 O 161.1 89.1 80.8 91.9 88.7 100.1 REMARK 620 N 1 2 3 4 5 6 DBREF 8AHY B 1 177 UNP P62166 NCS1_HUMAN 1 177 DBREF 8AHY P 400 432 UNP Q80ZG1 RIC8A_RAT 400 432 SEQRES 1 B 177 MET GLY LYS SER ASN SER LYS LEU LYS PRO GLU VAL VAL SEQRES 2 B 177 GLU GLU LEU THR ARG LYS THR TYR PHE THR GLU LYS GLU SEQRES 3 B 177 VAL GLN GLN TRP TYR LYS GLY PHE ILE LYS ASP CYS PRO SEQRES 4 B 177 SER GLY GLN LEU ASP ALA ALA GLY PHE GLN LYS ILE TYR SEQRES 5 B 177 LYS GLN PHE PHE PRO PHE GLY ASP PRO THR LYS PHE ALA SEQRES 6 B 177 THR PHE VAL PHE ASN VAL PHE ASP GLU ASN LYS ASP GLY SEQRES 7 B 177 ARG ILE GLU PHE SER GLU PHE ILE GLN ALA LEU SER VAL SEQRES 8 B 177 THR SER ARG GLY THR LEU ASP GLU LYS LEU ARG TRP ALA SEQRES 9 B 177 PHE LYS LEU TYR ASP LEU ASP ASN ASP GLY TYR ILE THR SEQRES 10 B 177 ARG ASN GLU MET LEU ASP ILE VAL ASP ALA ILE TYR GLN SEQRES 11 B 177 MET VAL GLY ASN THR VAL GLU LEU PRO GLU GLU GLU ASN SEQRES 12 B 177 THR PRO GLU LYS ARG VAL ASP ARG ILE PHE ALA MET MET SEQRES 13 B 177 ASP LYS ASN ALA ASP GLY LYS LEU THR LEU GLN GLU PHE SEQRES 14 B 177 GLN GLU GLY SER LYS ALA ASP PRO SEQRES 1 P 33 SER GLU SER VAL PRO ARG PHE ILE LYS TYR THR GLY TYR SEQRES 2 P 33 GLY ASN ALA ALA GLY LEU LEU ALA ALA ARG GLY LEU MET SEQRES 3 P 33 ALA GLY GLY ARG PRO GLU GLY HET CA B 201 1 HET CA B 202 1 HET NA B 203 1 HET MG B 204 1 HET 1PE B 205 9 HET GOL B 206 14 HET CL P 501 1 HET 1PE P 502 14 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 5 NA NA 1+ FORMUL 6 MG MG 2+ FORMUL 7 1PE 2(C10 H22 O6) FORMUL 8 GOL C3 H8 O3 FORMUL 9 CL CL 1- FORMUL 11 HOH *144(H2 O) HELIX 1 AA1 LYS B 9 LYS B 19 1 11 HELIX 2 AA2 THR B 23 CYS B 38 1 16 HELIX 3 AA3 ASP B 44 PHE B 56 1 13 HELIX 4 AA4 PRO B 61 ASP B 73 1 13 HELIX 5 AA5 PHE B 82 GLY B 95 1 14 HELIX 6 AA6 THR B 96 ASP B 109 1 14 HELIX 7 AA7 THR B 117 GLY B 133 1 17 HELIX 8 AA8 LEU B 138 GLU B 142 5 5 HELIX 9 AA9 THR B 144 ASP B 157 1 14 HELIX 10 AB1 THR B 165 GLU B 171 1 7 HELIX 11 AB2 PRO P 404 THR P 410 5 7 HELIX 12 AB3 GLY P 413 GLY P 428 1 16 SHEET 1 AA1 2 GLN B 42 LEU B 43 0 SHEET 2 AA1 2 ILE B 80 GLU B 81 -1 O ILE B 80 N LEU B 43 LINK OD1 ASP B 73 CA CA B 201 1555 1555 2.40 LINK OD1 ASN B 75 CA CA B 201 1555 1555 2.36 LINK OD1 ASP B 77 CA CA B 201 1555 1555 2.47 LINK O ARG B 79 CA CA B 201 1555 1555 2.25 LINK OE1 GLU B 81 CA CA B 201 1555 1555 2.47 LINK OE1 GLU B 84 CA CA B 201 1555 1555 2.41 LINK OE2 GLU B 84 CA CA B 201 1555 1555 2.46 LINK OD1 ASP B 109 CA CA B 202 1555 1555 2.39 LINK OD1 ASP B 111 CA CA B 202 1555 1555 2.37 LINK OD2 ASP B 111 MG MG B 204 1555 1555 2.08 LINK OD2 ASP B 111 MG MG B 204 1555 7555 2.03 LINK OD1 ASP B 113 CA CA B 202 1555 1555 2.45 LINK O TYR B 115 CA CA B 202 1555 1555 2.26 LINK OE1 GLU B 120 CA CA B 202 1555 1555 2.48 LINK OE2 GLU B 120 CA CA B 202 1555 1555 2.48 LINK OD1 ASP B 157 NA NA B 203 1555 1555 2.24 LINK OD1 ASN B 159 NA NA B 203 1555 1555 2.33 LINK OD1 ASP B 161 NA NA B 203 1555 1555 2.32 LINK O LYS B 163 NA NA B 203 1555 1555 2.31 LINK OE1 GLU B 168 NA NA B 203 1555 1555 2.42 LINK OE2 GLU B 168 NA NA B 203 1555 1555 2.56 LINK CA CA B 202 O HOH B 384 1555 1555 2.38 LINK NA NA B 203 O HOH B 318 1555 1555 2.25 LINK MG MG B 204 O HOH B 320 1555 1555 2.12 LINK MG MG B 204 O HOH B 320 1555 7555 2.16 LINK MG MG B 204 O HOH B 355 1555 1555 2.07 LINK MG MG B 204 O HOH B 355 1555 7555 2.07 LINK MG MG B 204 O HOH B 392 1555 1555 2.16 LINK MG MG B 204 O HOH B 392 1555 7555 2.16 CRYST1 56.635 56.635 135.297 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007391 0.00000