HEADER HYDROLASE 29-JUL-22 8AKA TITLE HUMAN SIRT6 IN COMPLEX WITH ADP-RIBOSE AND FRAGMENT CIS-RESVERATROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 6,SIR2-LIKE PROTEIN 6; COMPND 5 EC: 2.3.1.286; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT6, SIR2L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151-D-TOPO KEYWDS DEACYLASE, FRAGMENT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YOU,C.STEEGBORN REVDAT 1 16-AUG-23 8AKA 0 JRNL AUTH W.YOU,C.STEEGBORN JRNL TITL DEVELOPMENT OF NOVEL SIRTUIN 6 INHIBITORS AND ACTIVATORS JRNL TITL 2 BASED ON A PROTEIN CRYSTALLOGRAPHY-BASED FRAGMENT SCREEN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 63232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 203 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.53000 REMARK 3 B22 (A**2) : -16.53000 REMARK 3 B33 (A**2) : 33.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4643 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4411 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6300 ; 1.683 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10164 ; 1.262 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 6.909 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;31.758 ;19.876 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 764 ;15.161 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;18.426 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5037 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1031 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 15 A 297 1 REMARK 3 1 B 15 B 297 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 2145 ; 4.710 ; 0.500 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.625 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.375 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8AKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1292123524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7-6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65354 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 45.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5MF6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M (NH4)2SO4, 10% PEG 400, AND BIS REMARK 280 -TRIS BUFFER PH 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.59800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.59800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.59800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 ILE A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 170 REMARK 465 ALA A 171 REMARK 465 ARG A 172 REMARK 465 GLY A 173 REMARK 465 LEU A 174 REMARK 465 ARG A 175 REMARK 465 ALA A 176 REMARK 465 PRO A 299 REMARK 465 LYS A 300 REMARK 465 GLU A 301 REMARK 465 GLU A 302 REMARK 465 SER A 303 REMARK 465 PRO A 304 REMARK 465 THR A 305 REMARK 465 ARG A 306 REMARK 465 ILE A 307 REMARK 465 ASN A 308 REMARK 465 GLY B 7 REMARK 465 ILE B 8 REMARK 465 ASP B 9 REMARK 465 PRO B 10 REMARK 465 PHE B 11 REMARK 465 THR B 12 REMARK 465 ALA B 13 REMARK 465 ASP B 14 REMARK 465 LYS B 170 REMARK 465 ALA B 171 REMARK 465 ARG B 172 REMARK 465 GLY B 173 REMARK 465 LEU B 174 REMARK 465 ARG B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 299 REMARK 465 LYS B 300 REMARK 465 GLU B 301 REMARK 465 GLU B 302 REMARK 465 SER B 303 REMARK 465 PRO B 304 REMARK 465 THR B 305 REMARK 465 ARG B 306 REMARK 465 ILE B 307 REMARK 465 ASN B 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ARG B 231 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 264 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 76 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 76 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 232 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 253 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 253 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 124.55 -36.85 REMARK 500 LEU A 159 46.54 70.02 REMARK 500 ARG A 178 27.29 48.90 REMARK 500 LEU A 297 -71.75 -108.39 REMARK 500 ARG B 178 26.89 47.27 REMARK 500 LEU B 297 -60.47 -103.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 141 SG REMARK 620 2 CYS A 144 SG 112.1 REMARK 620 3 CYS A 166 SG 101.1 103.2 REMARK 620 4 CYS A 177 SG 99.7 130.6 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 141 SG REMARK 620 2 CYS B 144 SG 110.0 REMARK 620 3 CYS B 166 SG 106.8 101.5 REMARK 620 4 CYS B 177 SG 106.2 123.2 108.2 REMARK 620 N 1 2 3 DBREF 8AKA A 13 308 UNP Q8N6T7 SIR6_HUMAN 13 308 DBREF 8AKA B 13 308 UNP Q8N6T7 SIR6_HUMAN 13 308 SEQADV 8AKA GLY A 7 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA ILE A 8 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA ASP A 9 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA PRO A 10 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA PHE A 11 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA THR A 12 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA GLY B 7 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA ILE B 8 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA ASP B 9 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA PRO B 10 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA PHE B 11 UNP Q8N6T7 EXPRESSION TAG SEQADV 8AKA THR B 12 UNP Q8N6T7 EXPRESSION TAG SEQRES 1 A 302 GLY ILE ASP PRO PHE THR ALA ASP LYS GLY LYS CYS GLY SEQRES 2 A 302 LEU PRO GLU ILE PHE ASP PRO PRO GLU GLU LEU GLU ARG SEQRES 3 A 302 LYS VAL TRP GLU LEU ALA ARG LEU VAL TRP GLN SER SER SEQRES 4 A 302 SER VAL VAL PHE HIS THR GLY ALA GLY ILE SER THR ALA SEQRES 5 A 302 SER GLY ILE PRO ASP PHE ARG GLY PRO HIS GLY VAL TRP SEQRES 6 A 302 THR MET GLU GLU ARG GLY LEU ALA PRO LYS PHE ASP THR SEQRES 7 A 302 THR PHE GLU SER ALA ARG PRO THR GLN THR HIS MET ALA SEQRES 8 A 302 LEU VAL GLN LEU GLU ARG VAL GLY LEU LEU ARG PHE LEU SEQRES 9 A 302 VAL SER GLN ASN VAL ASP GLY LEU HIS VAL ARG SER GLY SEQRES 10 A 302 PHE PRO ARG ASP LYS LEU ALA GLU LEU HIS GLY ASN MET SEQRES 11 A 302 PHE VAL GLU GLU CYS ALA LYS CYS LYS THR GLN TYR VAL SEQRES 12 A 302 ARG ASP THR VAL VAL GLY THR MET GLY LEU LYS ALA THR SEQRES 13 A 302 GLY ARG LEU CYS THR VAL ALA LYS ALA ARG GLY LEU ARG SEQRES 14 A 302 ALA CYS ARG GLY GLU LEU ARG ASP THR ILE LEU ASP TRP SEQRES 15 A 302 GLU ASP SER LEU PRO ASP ARG ASP LEU ALA LEU ALA ASP SEQRES 16 A 302 GLU ALA SER ARG ASN ALA ASP LEU SER ILE THR LEU GLY SEQRES 17 A 302 THR SER LEU GLN ILE ARG PRO SER GLY ASN LEU PRO LEU SEQRES 18 A 302 ALA THR LYS ARG ARG GLY GLY ARG LEU VAL ILE VAL ASN SEQRES 19 A 302 LEU GLN PRO THR LYS HIS ASP ARG HIS ALA ASP LEU ARG SEQRES 20 A 302 ILE HIS GLY TYR VAL ASP GLU VAL MET THR ARG LEU MET SEQRES 21 A 302 LYS HIS LEU GLY LEU GLU ILE PRO ALA TRP ASP GLY PRO SEQRES 22 A 302 ARG VAL LEU GLU ARG ALA LEU PRO PRO LEU PRO ARG PRO SEQRES 23 A 302 PRO THR PRO LYS LEU GLU PRO LYS GLU GLU SER PRO THR SEQRES 24 A 302 ARG ILE ASN SEQRES 1 B 302 GLY ILE ASP PRO PHE THR ALA ASP LYS GLY LYS CYS GLY SEQRES 2 B 302 LEU PRO GLU ILE PHE ASP PRO PRO GLU GLU LEU GLU ARG SEQRES 3 B 302 LYS VAL TRP GLU LEU ALA ARG LEU VAL TRP GLN SER SER SEQRES 4 B 302 SER VAL VAL PHE HIS THR GLY ALA GLY ILE SER THR ALA SEQRES 5 B 302 SER GLY ILE PRO ASP PHE ARG GLY PRO HIS GLY VAL TRP SEQRES 6 B 302 THR MET GLU GLU ARG GLY LEU ALA PRO LYS PHE ASP THR SEQRES 7 B 302 THR PHE GLU SER ALA ARG PRO THR GLN THR HIS MET ALA SEQRES 8 B 302 LEU VAL GLN LEU GLU ARG VAL GLY LEU LEU ARG PHE LEU SEQRES 9 B 302 VAL SER GLN ASN VAL ASP GLY LEU HIS VAL ARG SER GLY SEQRES 10 B 302 PHE PRO ARG ASP LYS LEU ALA GLU LEU HIS GLY ASN MET SEQRES 11 B 302 PHE VAL GLU GLU CYS ALA LYS CYS LYS THR GLN TYR VAL SEQRES 12 B 302 ARG ASP THR VAL VAL GLY THR MET GLY LEU LYS ALA THR SEQRES 13 B 302 GLY ARG LEU CYS THR VAL ALA LYS ALA ARG GLY LEU ARG SEQRES 14 B 302 ALA CYS ARG GLY GLU LEU ARG ASP THR ILE LEU ASP TRP SEQRES 15 B 302 GLU ASP SER LEU PRO ASP ARG ASP LEU ALA LEU ALA ASP SEQRES 16 B 302 GLU ALA SER ARG ASN ALA ASP LEU SER ILE THR LEU GLY SEQRES 17 B 302 THR SER LEU GLN ILE ARG PRO SER GLY ASN LEU PRO LEU SEQRES 18 B 302 ALA THR LYS ARG ARG GLY GLY ARG LEU VAL ILE VAL ASN SEQRES 19 B 302 LEU GLN PRO THR LYS HIS ASP ARG HIS ALA ASP LEU ARG SEQRES 20 B 302 ILE HIS GLY TYR VAL ASP GLU VAL MET THR ARG LEU MET SEQRES 21 B 302 LYS HIS LEU GLY LEU GLU ILE PRO ALA TRP ASP GLY PRO SEQRES 22 B 302 ARG VAL LEU GLU ARG ALA LEU PRO PRO LEU PRO ARG PRO SEQRES 23 B 302 PRO THR PRO LYS LEU GLU PRO LYS GLU GLU SER PRO THR SEQRES 24 B 302 ARG ILE ASN HET AR6 A 401 36 HET ZN A 402 1 HET STL A 403 17 HET PEG A 404 7 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET PGE A 411 10 HET CL A 412 1 HET CL A 413 1 HET CL A 414 1 HET CL A 415 1 HET PEG B 401 7 HET AR6 B 402 36 HET ZN B 403 1 HET STL B 404 17 HET EDO B 405 4 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HET SO4 B 409 5 HET PGE B 410 10 HET CL B 411 1 HET CL B 412 1 HET CL B 413 1 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM ZN ZINC ION HETNAM STL RESVERATROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 AR6 2(C15 H23 N5 O14 P2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 STL 2(C14 H12 O3) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 7 SO4 10(O4 S 2-) FORMUL 13 PGE 2(C6 H14 O4) FORMUL 14 CL 7(CL 1-) FORMUL 22 EDO C2 H6 O2 FORMUL 31 HOH *140(H2 O) HELIX 1 AA1 PRO A 26 SER A 44 1 19 HELIX 2 AA2 ALA A 53 GLY A 60 5 8 HELIX 3 AA3 GLY A 69 ARG A 76 1 8 HELIX 4 AA4 THR A 92 VAL A 104 1 13 HELIX 5 AA5 GLY A 117 GLY A 123 1 7 HELIX 6 AA6 PRO A 125 ASP A 127 5 3 HELIX 7 AA7 PRO A 193 ALA A 207 1 15 HELIX 8 AA8 PRO A 221 GLY A 223 5 3 HELIX 9 AA9 ASN A 224 THR A 229 1 6 HELIX 10 AB1 HIS A 246 ALA A 250 5 5 HELIX 11 AB2 TYR A 257 GLY A 270 1 14 HELIX 12 AB3 PRO B 26 SER B 44 1 19 HELIX 13 AB4 ALA B 53 GLY B 60 5 8 HELIX 14 AB5 GLY B 69 ARG B 76 1 8 HELIX 15 AB6 THR B 92 VAL B 104 1 13 HELIX 16 AB7 GLY B 117 SER B 122 1 6 HELIX 17 AB8 PRO B 125 ASP B 127 5 3 HELIX 18 AB9 PRO B 193 ALA B 207 1 15 HELIX 19 AC1 PRO B 221 GLY B 223 5 3 HELIX 20 AC2 ASN B 224 THR B 229 1 6 HELIX 21 AC3 HIS B 246 ALA B 250 5 5 HELIX 22 AC4 TYR B 257 GLY B 270 1 14 SHEET 1 AA1 6 LEU A 129 GLU A 131 0 SHEET 2 AA1 6 PHE A 109 SER A 112 1 N SER A 112 O ALA A 130 SHEET 3 AA1 6 VAL A 47 THR A 51 1 N PHE A 49 O VAL A 111 SHEET 4 AA1 6 LEU A 209 LEU A 213 1 O LEU A 209 N VAL A 48 SHEET 5 AA1 6 ARG A 235 VAL A 239 1 O VAL A 237 N THR A 212 SHEET 6 AA1 6 LEU A 252 ILE A 254 1 O LEU A 252 N ILE A 238 SHEET 1 AA2 4 GLN A 147 VAL A 149 0 SHEET 2 AA2 4 VAL A 138 CYS A 141 -1 N GLU A 139 O TYR A 148 SHEET 3 AA2 4 GLU A 180 ASP A 183 -1 O ARG A 182 N GLU A 140 SHEET 4 AA2 4 ALA A 161 LEU A 165 -1 N THR A 162 O LEU A 181 SHEET 1 AA3 6 LEU B 129 GLU B 131 0 SHEET 2 AA3 6 PHE B 109 SER B 112 1 N SER B 112 O ALA B 130 SHEET 3 AA3 6 VAL B 47 THR B 51 1 N PHE B 49 O VAL B 111 SHEET 4 AA3 6 LEU B 209 LEU B 213 1 O LEU B 209 N VAL B 48 SHEET 5 AA3 6 ARG B 235 VAL B 239 1 O VAL B 237 N THR B 212 SHEET 6 AA3 6 LEU B 252 ILE B 254 1 O LEU B 252 N ILE B 238 SHEET 1 AA4 4 GLN B 147 VAL B 149 0 SHEET 2 AA4 4 VAL B 138 CYS B 141 -1 N GLU B 139 O TYR B 148 SHEET 3 AA4 4 GLU B 180 ASP B 183 -1 O ARG B 182 N GLU B 140 SHEET 4 AA4 4 ALA B 161 LEU B 165 -1 N THR B 162 O LEU B 181 LINK SG CYS A 141 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 144 ZN ZN A 402 1555 1555 2.26 LINK SG CYS A 166 ZN ZN A 402 1555 1555 2.24 LINK SG CYS A 177 ZN ZN A 402 1555 1555 2.36 LINK SG CYS B 141 ZN ZN B 403 1555 1555 2.26 LINK SG CYS B 144 ZN ZN B 403 1555 1555 2.22 LINK SG CYS B 166 ZN ZN B 403 1555 1555 2.23 LINK SG CYS B 177 ZN ZN B 403 1555 1555 2.39 CISPEP 1 ARG A 220 PRO A 221 0 -5.20 CISPEP 2 ARG B 220 PRO B 221 0 -4.51 CRYST1 91.034 91.034 143.196 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010985 0.006342 0.000000 0.00000 SCALE2 0.000000 0.012684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006983 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.346254 -0.938129 0.004659 -0.15323 1 MTRIX2 2 -0.938127 -0.346272 -0.003664 0.21009 1 MTRIX3 2 0.005051 -0.003102 -0.999982 61.11182 1