HEADER ANTIMICROBIAL PROTEIN 29-JUL-22 8AKK
TITLE ACYL-ENZYME COMPLEX OF IMIPENEM BOUND TO DEACYLATION MUTANT KPC-2
TITLE 2 (E166Q)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: CARBAPENEM-HYDROLYZING BETA-LACTAMASE KPC-1;
COMPND 5 EC: 3.5.2.6;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLA, KPC, KPC1;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ACYL-ENZYME COMPLEX, ANTIBIOTIC RESISTANCE, BETA-LACTAMASE,
KEYWDS 2 ANTIBIOTIC, LIGAND, ANTIMICROBIAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.L.TOOKE,P.HINCHLIFFE,J.SPENCER
REVDAT 5 09-OCT-24 8AKK 1 REMARK
REVDAT 4 07-FEB-24 8AKK 1 REMARK
REVDAT 3 30-AUG-23 8AKK 1 JRNL
REVDAT 2 22-MAR-23 8AKK 1 COMPND REMARK HET HETNAM
REVDAT 2 2 1 HETSYN FORMUL LINK ATOM
REVDAT 1 08-MAR-23 8AKK 0
JRNL AUTH C.L.TOOKE,P.HINCHLIFFE,M.BEER,K.ZINOVJEV,C.K.COLENSO,
JRNL AUTH 2 C.J.SCHOFIELD,A.J.MULHOLLAND,J.SPENCER
JRNL TITL TAUTOMER-SPECIFIC DEACYLATION AND OMEGA-LOOP FLEXIBILITY
JRNL TITL 2 EXPLAIN THE CARBAPENEM-HYDROLYZING BROAD-SPECTRUM ACTIVITY
JRNL TITL 3 OF THE KPC-2 BETA-LACTAMASE.
JRNL REF J.AM.CHEM.SOC. V. 145 7166 2023
JRNL REFN ESSN 1520-5126
JRNL PMID 36972204
JRNL DOI 10.1021/JACS.2C12123
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD,
REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV,
REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS
REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH
REMARK 1 TITL 2 PHENIX.REFINE.
REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012
REMARK 1 REFN ESSN 1399-0047
REMARK 1 PMID 22505256
REMARK 1 DOI 10.1107/S0907444912001308
REMARK 1 REFERENCE 2
REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN,
REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY,
REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON,
REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL,
REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS,
REMARK 1 AUTH 6 P.D.ADAMS
REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS,
REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX.
REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019
REMARK 1 REF 2 BIOL
REMARK 1 REFN ISSN 2059-7983
REMARK 1 PMID 31588918
REMARK 1 DOI 10.1107/S2059798319011471
REMARK 2
REMARK 2 RESOLUTION. 1.36 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.18.2_3874
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.22
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 58791
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.156
REMARK 3 R VALUE (WORKING SET) : 0.154
REMARK 3 FREE R VALUE : 0.180
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 3013
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 48.2200 - 3.8100 1.00 2750 131 0.1575 0.1616
REMARK 3 2 3.8100 - 3.0200 1.00 2610 147 0.1413 0.1521
REMARK 3 3 3.0200 - 2.6400 1.00 2584 134 0.1391 0.1416
REMARK 3 4 2.6400 - 2.4000 1.00 2578 129 0.1272 0.1493
REMARK 3 5 2.4000 - 2.2300 1.00 2542 145 0.1271 0.1632
REMARK 3 6 2.2300 - 2.1000 1.00 2567 126 0.1270 0.1674
REMARK 3 7 2.1000 - 1.9900 1.00 2508 146 0.1305 0.1866
REMARK 3 8 1.9900 - 1.9100 1.00 2515 143 0.1294 0.1688
REMARK 3 9 1.9100 - 1.8300 1.00 2584 96 0.1316 0.1519
REMARK 3 10 1.8300 - 1.7700 1.00 2519 131 0.1283 0.1756
REMARK 3 11 1.7700 - 1.7100 1.00 2543 128 0.1342 0.1883
REMARK 3 12 1.7100 - 1.6600 1.00 2522 137 0.1436 0.1900
REMARK 3 13 1.6600 - 1.6200 1.00 2497 134 0.1804 0.2015
REMARK 3 14 1.6200 - 1.5800 1.00 2499 155 0.1687 0.2215
REMARK 3 15 1.5800 - 1.5500 1.00 2501 135 0.1765 0.2146
REMARK 3 16 1.5500 - 1.5100 1.00 2490 136 0.1933 0.2112
REMARK 3 17 1.5100 - 1.4800 1.00 2500 147 0.1988 0.2492
REMARK 3 18 1.4800 - 1.4500 1.00 2497 128 0.2288 0.2493
REMARK 3 19 1.4500 - 1.4300 1.00 2479 154 0.2679 0.3180
REMARK 3 20 1.4300 - 1.4000 1.00 2492 144 0.3136 0.3464
REMARK 3 21 1.4000 - 1.3800 1.00 2509 143 0.3692 0.3912
REMARK 3 22 1.3800 - 1.3600 1.00 2492 144 0.4232 0.3820
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.780
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 14.94
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.44
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8AKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-22.
REMARK 100 THE DEPOSITION ID IS D_1292124686.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-MAY-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALBA
REMARK 200 BEAMLINE : XALOC
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.899960
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58883
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360
REMARK 200 RESOLUTION RANGE LOW (A) : 48.220
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.10
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: 6Z21
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.04
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 5% V/V
REMARK 280 ETHANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.33100
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.74100
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.33100
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.74100
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 830 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 11160 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 4
REMARK 465 GLY A 5
REMARK 465 SER A 6
REMARK 465 SER A 7
REMARK 465 HIS A 8
REMARK 465 HIS A 9
REMARK 465 HIS A 10
REMARK 465 HIS A 11
REMARK 465 HIS A 12
REMARK 465 HIS A 13
REMARK 465 SER A 14
REMARK 465 SER A 15
REMARK 465 GLY A 16
REMARK 465 LEU A 17
REMARK 465 VAL A 18
REMARK 465 PRO A 19
REMARK 465 ARG A 20
REMARK 465 GLY A 21
REMARK 465 SER A 22
REMARK 465 HIS A 23
REMARK 465 MET A 24
REMARK 465 GLN A 295
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 522 O HOH A 611 1.95
REMARK 500 O HOH A 467 O HOH A 595 2.11
REMARK 500 O HOH A 402 O HOH A 454 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 447 O HOH A 597 4456 1.65
REMARK 500 O HOH A 550 O HOH A 589 4556 1.92
REMARK 500 O HOH A 611 O HOH A 631 4455 2.03
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES
REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 CYS A 69 -143.69 51.65
REMARK 500 TRP A 105 68.27 61.81
REMARK 500 LEU A 167 -68.12 73.20
REMARK 500 ARG A 220 -124.38 -115.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 659 DISTANCE = 6.10 ANGSTROMS
DBREF 8AKK A 25 295 UNP Q9F663 BLKPC_KLEPN 25 293
SEQADV 8AKK MET A 4 UNP Q9F663 INITIATING METHIONINE
SEQADV 8AKK GLY A 5 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK SER A 6 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK SER A 7 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK HIS A 8 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK HIS A 9 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK HIS A 10 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK HIS A 11 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK HIS A 12 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK HIS A 13 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK SER A 14 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK SER A 15 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK GLY A 16 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK LEU A 17 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK VAL A 18 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK PRO A 19 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK ARG A 20 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK GLY A 21 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK SER A 22 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK HIS A 23 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK MET A 24 UNP Q9F663 EXPRESSION TAG
SEQADV 8AKK GLN A 166 UNP Q9F663 GLU 165 ENGINEERED MUTATION
SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU THR ASN LEU VAL
SEQRES 3 A 290 ALA GLU PRO PHE ALA LYS LEU GLU GLN ASP PHE GLY GLY
SEQRES 4 A 290 SER ILE GLY VAL TYR ALA MET ASP THR GLY SER GLY ALA
SEQRES 5 A 290 THR VAL SER TYR ARG ALA GLU GLU ARG PHE PRO LEU CYS
SEQRES 6 A 290 SER SER PHE LYS GLY PHE LEU ALA ALA ALA VAL LEU ALA
SEQRES 7 A 290 ARG SER GLN GLN GLN ALA GLY LEU LEU ASP THR PRO ILE
SEQRES 8 A 290 ARG TYR GLY LYS ASN ALA LEU VAL PRO TRP SER PRO ILE
SEQRES 9 A 290 SER GLU LYS TYR LEU THR THR GLY MET THR VAL ALA GLU
SEQRES 10 A 290 LEU SER ALA ALA ALA VAL GLN TYR SER ASP ASN ALA ALA
SEQRES 11 A 290 ALA ASN LEU LEU LEU LYS GLU LEU GLY GLY PRO ALA GLY
SEQRES 12 A 290 LEU THR ALA PHE MET ARG SER ILE GLY ASP THR THR PHE
SEQRES 13 A 290 ARG LEU ASP ARG TRP GLN LEU GLU LEU ASN SER ALA ILE
SEQRES 14 A 290 PRO GLY ASP ALA ARG ASP THR SER SER PRO ARG ALA VAL
SEQRES 15 A 290 THR GLU SER LEU GLN LYS LEU THR LEU GLY SER ALA LEU
SEQRES 16 A 290 ALA ALA PRO GLN ARG GLN GLN PHE VAL ASP TRP LEU LYS
SEQRES 17 A 290 GLY ASN THR THR GLY ASN HIS ARG ILE ARG ALA ALA VAL
SEQRES 18 A 290 PRO ALA ASP TRP ALA VAL GLY ASP LYS THR GLY THR CYS
SEQRES 19 A 290 GLY VAL TYR GLY THR ALA ASN ASP TYR ALA VAL VAL TRP
SEQRES 20 A 290 PRO THR GLY ARG ALA PRO ILE VAL LEU ALA VAL TYR THR
SEQRES 21 A 290 ARG ALA PRO ASN LYS ASP ASP LYS HIS SER GLU ALA VAL
SEQRES 22 A 290 ILE ALA ALA ALA ALA ARG LEU ALA LEU GLU GLY LEU GLY
SEQRES 23 A 290 VAL ASN GLY GLN
HET ID1 A 301 37
HET HIW A 302 37
HET SO4 A 303 5
HET SO4 A 304 5
HET SO4 A 305 5
HET GOL A 306 14
HET GOL A 307 14
HETNAM ID1 IMIPENEM
HETNAM HIW (2R,4S)-2-[(1S,2R)-1-CARBOXY-2-HYDROXYPROPYL]-4-[(2-
HETNAM 2 HIW {[(Z)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-3,4-DIHYDRO-
HETNAM 3 HIW 2H-PYRROLE-5-CA RBOXYLIC ACID
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETSYN HIW HYDROLYZED IMIPENEM
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 ID1 C12 H19 N3 O4 S
FORMUL 3 HIW C12 H19 N3 O5 S
FORMUL 4 SO4 3(O4 S 2-)
FORMUL 7 GOL 2(C3 H8 O3)
FORMUL 9 HOH *259(H2 O)
HELIX 1 AA1 PRO A 32 GLY A 41 1 10
HELIX 2 AA2 SER A 71 GLN A 87 1 17
HELIX 3 AA3 GLY A 98 LEU A 102 5 5
HELIX 4 AA4 ILE A 108 LEU A 113 5 6
HELIX 5 AA5 VAL A 119 TYR A 129 1 11
HELIX 6 AA6 ASP A 131 LEU A 142 1 12
HELIX 7 AA7 GLY A 143 ILE A 155 1 13
HELIX 8 AA8 LEU A 167 SER A 171 5 5
HELIX 9 AA9 SER A 182 LEU A 195 1 14
HELIX 10 AB1 ALA A 200 GLY A 213 1 14
HELIX 11 AB2 ARG A 220 VAL A 225 5 6
HELIX 12 AB3 SER A 275 LEU A 290 1 16
SHEET 1 AA1 5 THR A 56 TYR A 60 0
SHEET 2 AA1 5 SER A 43 ASP A 50 -1 N VAL A 46 O TYR A 60
SHEET 3 AA1 5 ILE A 259 ARG A 266 -1 O TYR A 264 N GLY A 45
SHEET 4 AA1 5 ALA A 244 TRP A 251 -1 N VAL A 250 O ILE A 259
SHEET 5 AA1 5 ALA A 230 THR A 237 -1 N ALA A 230 O TRP A 251
SHEET 1 AA2 2 PHE A 66 PRO A 67 0
SHEET 2 AA2 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66
SHEET 1 AA3 2 PRO A 94 ILE A 95 0
SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95
SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.03
LINK OG SER A 70 C7 ID1 A 301 1555 1555 1.38
LINK OG SER A 70 C7 HIW A 302 1555 1555 1.38
CRYST1 60.662 79.482 55.945 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016485 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012581 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017875 0.00000