HEADER STRUCTURAL PROTEIN 01-AUG-22 8ALH TITLE X-RAY STRUCTURE OF HUMAN NCS-1 BOUND TO RIC-8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL CALCIUM SENSOR 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: NCS-1,FREQUENIN HOMOLOG,FREQUENIN-LIKE PROTEIN,FREQUENIN- COMPND 5 LIKE UBIQUITOUS PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RESISTANCE TO INHIBITORS OF CHOLINESTERASE 8 HOMOLOG A (C. COMPND 9 ELEGANS); COMPND 10 CHAIN: P; COMPND 11 SYNONYM: RIC8A PROTEIN,SYNEMBRYN-A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCS1, FLUP, FREQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: NORWAY RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS NCS-1, RIC-8A, COMPLEX, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MUNOZ-REYES,M.J.SANCHEZ-BARRENA REVDAT 2 10-JAN-24 8ALH 1 JRNL REVDAT 1 13-DEC-23 8ALH 0 JRNL AUTH D.MUNOZ-REYES,L.J.MCCLELLAND,S.ARROYO-UREA,S.SANCHEZ-YEPES, JRNL AUTH 2 J.SABIN,S.PEREZ-SUAREZ,M.MENENDEZ,A.MANSILLA, JRNL AUTH 3 J.GARCIA-NAFRIA,S.SPRANG,M.J.SANCHEZ-BARRENA JRNL TITL THE NEURONAL CALCIUM SENSOR NCS-1 REGULATES THE JRNL TITL 2 PHOSPHORYLATION STATE AND ACTIVITY OF THE G ALPHA CHAPERONE JRNL TITL 3 AND GEF RIC-8A. JRNL REF ELIFE V. 12 2023 JRNL REFN ESSN 2050-084X JRNL PMID 38018500 JRNL DOI 10.7554/ELIFE.86151 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 18029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.3800 - 3.3700 1.00 3279 178 0.1893 0.2145 REMARK 3 2 3.3700 - 2.6800 1.00 3119 147 0.1876 0.2345 REMARK 3 3 2.6800 - 2.3400 1.00 3062 156 0.1960 0.2368 REMARK 3 4 2.3400 - 2.1200 1.00 3036 149 0.1907 0.2707 REMARK 3 5 2.1200 - 1.9700 0.99 3003 137 0.2437 0.2614 REMARK 3 6 1.9700 - 1.8600 0.56 1687 76 0.2631 0.2849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1703 REMARK 3 ANGLE : 0.920 2293 REMARK 3 CHIRALITY : 0.052 239 REMARK 3 PLANARITY : 0.008 301 REMARK 3 DIHEDRAL : 8.844 238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0806 39.0382 20.9483 REMARK 3 T TENSOR REMARK 3 T11: 0.5874 T22: 0.4615 REMARK 3 T33: 0.7820 T12: -0.0907 REMARK 3 T13: 0.0249 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 2.2631 L22: 4.9214 REMARK 3 L33: 6.5963 L12: 3.9804 REMARK 3 L13: 2.8306 L23: 0.8931 REMARK 3 S TENSOR REMARK 3 S11: -0.1041 S12: 1.0158 S13: 1.6036 REMARK 3 S21: 0.7094 S22: 0.3888 S23: -0.6535 REMARK 3 S31: -1.4730 S32: 1.5818 S33: -0.2169 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3971 23.1043 27.4970 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.3189 REMARK 3 T33: 0.1755 T12: 0.0152 REMARK 3 T13: 0.0039 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.7558 L22: 2.6829 REMARK 3 L33: 3.6718 L12: 0.6885 REMARK 3 L13: 0.2494 L23: 0.8637 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: -0.5011 S13: 0.1210 REMARK 3 S21: 0.3249 S22: 0.0087 S23: -0.1440 REMARK 3 S31: 0.2050 S32: 0.2220 S33: 0.1021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1838 20.4892 18.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.2916 REMARK 3 T33: 0.1960 T12: 0.0024 REMARK 3 T13: 0.0100 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 3.3895 L22: 4.0542 REMARK 3 L33: 1.8818 L12: -0.1377 REMARK 3 L13: 0.1615 L23: 1.7623 REMARK 3 S TENSOR REMARK 3 S11: -0.1160 S12: 0.1755 S13: 0.1310 REMARK 3 S21: -0.0048 S22: 0.1214 S23: -0.2188 REMARK 3 S31: -0.0059 S32: 0.2598 S33: -0.0123 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7063 5.5314 11.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.1745 REMARK 3 T33: 0.3044 T12: 0.0034 REMARK 3 T13: 0.0468 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 2.7855 L22: 2.7973 REMARK 3 L33: 2.1737 L12: -0.9946 REMARK 3 L13: -0.7200 L23: 1.5308 REMARK 3 S TENSOR REMARK 3 S11: -0.1167 S12: -0.1449 S13: -0.6618 REMARK 3 S21: 0.1417 S22: -0.0213 S23: 0.3860 REMARK 3 S31: 0.3909 S32: 0.0377 S33: 0.0961 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7500 6.1036 2.3106 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.3569 REMARK 3 T33: 0.4846 T12: -0.0139 REMARK 3 T13: -0.0788 T23: -0.0829 REMARK 3 L TENSOR REMARK 3 L11: 5.1452 L22: 4.5553 REMARK 3 L33: 5.3639 L12: 1.5490 REMARK 3 L13: -1.8489 L23: 0.7994 REMARK 3 S TENSOR REMARK 3 S11: -0.0925 S12: 0.8077 S13: -0.8900 REMARK 3 S21: -0.1925 S22: -0.1064 S23: 0.9318 REMARK 3 S31: 0.2728 S32: -0.6374 S33: 0.1212 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 402 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4916 5.5836 22.9541 REMARK 3 T TENSOR REMARK 3 T11: 1.8610 T22: 0.9489 REMARK 3 T33: 1.1752 T12: -0.2821 REMARK 3 T13: -0.0733 T23: 0.2982 REMARK 3 L TENSOR REMARK 3 L11: 2.9001 L22: 1.1506 REMARK 3 L33: 1.9072 L12: 1.8447 REMARK 3 L13: -2.3446 L23: -1.4854 REMARK 3 S TENSOR REMARK 3 S11: 0.1861 S12: -0.5053 S13: -0.0468 REMARK 3 S21: 0.0835 S22: 0.1500 S23: 0.8837 REMARK 3 S31: -0.8751 S32: -0.9935 S33: -0.4162 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 407 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0094 6.8440 13.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.2326 REMARK 3 T33: 0.2992 T12: 0.0018 REMARK 3 T13: 0.0642 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.0412 L22: 7.7641 REMARK 3 L33: 3.2139 L12: 1.2295 REMARK 3 L13: -3.1004 L23: 0.8970 REMARK 3 S TENSOR REMARK 3 S11: -0.1696 S12: -0.3212 S13: -0.4779 REMARK 3 S21: 0.2865 S22: -0.3138 S23: 0.3266 REMARK 3 S31: 0.6586 S32: 0.0659 S33: 0.4256 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 414 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6659 17.2025 23.4961 REMARK 3 T TENSOR REMARK 3 T11: 0.2997 T22: 0.2791 REMARK 3 T33: 0.2811 T12: -0.0088 REMARK 3 T13: 0.0387 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 5.2500 L22: 2.5120 REMARK 3 L33: 2.2592 L12: 4.8355 REMARK 3 L13: 5.3208 L23: 8.8852 REMARK 3 S TENSOR REMARK 3 S11: -0.1258 S12: -0.5857 S13: 0.4153 REMARK 3 S21: 0.4535 S22: -0.5048 S23: 0.7557 REMARK 3 S31: 0.5401 S32: -0.4199 S33: 0.4818 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ALH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979263 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS 1.0.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.854 REMARK 200 RESOLUTION RANGE LOW (A) : 52.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6QI4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 100 MM SODIUM ACETATE REMARK 280 PH 4.6, 100 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.30600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.43050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.43050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.65300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.43050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.43050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.95900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.43050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.43050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.65300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.43050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.43050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 100.95900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.30600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 359 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 386 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 PRO B 177 REMARK 465 SER P 400 REMARK 465 GLU P 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 161 HZ2 LYS B 163 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 140 HH TYR P 409 5445 1.47 REMARK 500 HH11 ARG B 18 O PRO B 139 1565 1.53 REMARK 500 OE1 GLU B 140 OH TYR P 409 5445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE B 205 REMARK 610 1PE P 502 REMARK 610 1PE P 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 OD1 REMARK 620 2 ASN B 75 OD1 82.1 REMARK 620 3 ASP B 77 OD1 81.2 80.2 REMARK 620 4 ARG B 79 O 80.9 154.8 78.9 REMARK 620 5 GLU B 84 OE1 107.6 128.4 150.4 74.9 REMARK 620 6 GLU B 84 OE2 94.3 76.9 157.0 122.8 52.4 REMARK 620 7 HOH B 352 O 166.1 92.1 85.4 100.1 85.9 96.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 ASP B 111 OD1 75.9 REMARK 620 3 ASP B 113 OD1 81.3 76.9 REMARK 620 4 TYR B 115 O 80.9 150.2 81.4 REMARK 620 5 GLU B 120 OE1 113.6 129.0 151.6 77.6 REMARK 620 6 GLU B 120 OE2 103.6 76.7 150.9 127.5 52.3 REMARK 620 7 HOH B 372 O 165.7 96.0 85.3 102.3 80.7 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 111 OD2 REMARK 620 2 ASP B 111 OD2 0.0 REMARK 620 3 HOH B 310 O 87.7 87.7 REMARK 620 4 HOH B 310 O 93.1 93.1 174.4 REMARK 620 5 HOH B 359 O 85.7 85.7 88.3 86.3 REMARK 620 6 HOH B 359 O 85.8 85.8 88.6 85.9 0.4 REMARK 620 7 HOH B 386 O 95.8 95.8 94.0 91.4 177.3 177.0 REMARK 620 8 HOH B 386 O 95.8 95.8 94.0 91.4 177.3 177.0 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 157 OD1 REMARK 620 2 ASN B 159 OD1 79.4 REMARK 620 3 ASP B 161 OD1 77.1 76.2 REMARK 620 4 LYS B 163 O 85.2 151.5 77.0 REMARK 620 5 GLU B 168 OE1 101.8 125.1 158.4 81.4 REMARK 620 6 GLU B 168 OE2 86.6 72.4 146.8 130.8 53.2 REMARK 620 7 HOH B 309 O 159.3 93.2 82.4 92.9 98.3 109.7 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AHY RELATED DB: PDB REMARK 900 THIS IS THE SECOND STRUCTURE SOLVED WITH A RIC8A PEPTIDE DBREF 8ALH B 1 177 UNP P62166 NCS1_HUMAN 1 177 DBREF 8ALH P 400 429 UNP B1H241 B1H241_RAT 400 429 SEQRES 1 B 177 MET GLY LYS SER ASN SER LYS LEU LYS PRO GLU VAL VAL SEQRES 2 B 177 GLU GLU LEU THR ARG LYS THR TYR PHE THR GLU LYS GLU SEQRES 3 B 177 VAL GLN GLN TRP TYR LYS GLY PHE ILE LYS ASP CYS PRO SEQRES 4 B 177 SER GLY GLN LEU ASP ALA ALA GLY PHE GLN LYS ILE TYR SEQRES 5 B 177 LYS GLN PHE PHE PRO PHE GLY ASP PRO THR LYS PHE ALA SEQRES 6 B 177 THR PHE VAL PHE ASN VAL PHE ASP GLU ASN LYS ASP GLY SEQRES 7 B 177 ARG ILE GLU PHE SER GLU PHE ILE GLN ALA LEU SER VAL SEQRES 8 B 177 THR SER ARG GLY THR LEU ASP GLU LYS LEU ARG TRP ALA SEQRES 9 B 177 PHE LYS LEU TYR ASP LEU ASP ASN ASP GLY TYR ILE THR SEQRES 10 B 177 ARG ASN GLU MET LEU ASP ILE VAL ASP ALA ILE TYR GLN SEQRES 11 B 177 MET VAL GLY ASN THR VAL GLU LEU PRO GLU GLU GLU ASN SEQRES 12 B 177 THR PRO GLU LYS ARG VAL ASP ARG ILE PHE ALA MET MET SEQRES 13 B 177 ASP LYS ASN ALA ASP GLY LYS LEU THR LEU GLN GLU PHE SEQRES 14 B 177 GLN GLU GLY SER LYS ALA ASP PRO SEQRES 1 P 30 SER GLU SER VAL PRO ARG PHE ILE LYS TYR THR GLY TYR SEQRES 2 P 30 GLY ASN ALA ALA GLY LEU LEU ALA ALA ARG GLY LEU MET SEQRES 3 P 30 ALA GLY GLY ARG HET CA B 201 1 HET CA B 202 1 HET NA B 203 1 HET MG B 204 1 HET 1PE B 205 9 HET GOL B 206 14 HET CL P 501 1 HET 1PE P 502 14 HET 1PE P 503 9 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 5 NA NA 1+ FORMUL 6 MG MG 2+ FORMUL 7 1PE 3(C10 H22 O6) FORMUL 8 GOL C3 H8 O3 FORMUL 9 CL CL 1- FORMUL 12 HOH *141(H2 O) HELIX 1 AA1 LYS B 9 THR B 20 1 12 HELIX 2 AA2 THR B 23 CYS B 38 1 16 HELIX 3 AA3 ASP B 44 PHE B 56 1 13 HELIX 4 AA4 PRO B 61 ASP B 73 1 13 HELIX 5 AA5 PHE B 82 GLY B 95 1 14 HELIX 6 AA6 THR B 96 ASP B 109 1 14 HELIX 7 AA7 THR B 117 GLY B 133 1 17 HELIX 8 AA8 THR B 144 ASP B 157 1 14 HELIX 9 AA9 THR B 165 GLU B 171 1 7 HELIX 10 AB1 PRO P 404 THR P 410 5 7 HELIX 11 AB2 GLY P 413 GLY P 428 1 16 SHEET 1 AA1 2 GLN B 42 LEU B 43 0 SHEET 2 AA1 2 ILE B 80 GLU B 81 -1 O ILE B 80 N LEU B 43 LINK OD1 ASP B 73 CA CA B 201 1555 1555 2.35 LINK OD1 ASN B 75 CA CA B 201 1555 1555 2.32 LINK OD1 ASP B 77 CA CA B 201 1555 1555 2.46 LINK O ARG B 79 CA CA B 201 1555 1555 2.28 LINK OE1 GLU B 84 CA CA B 201 1555 1555 2.52 LINK OE2 GLU B 84 CA CA B 201 1555 1555 2.42 LINK OD1 ASP B 109 CA CA B 202 1555 1555 2.33 LINK OD1 ASP B 111 CA CA B 202 1555 1555 2.32 LINK OD2 ASP B 111 MG MG B 204 1555 1555 2.07 LINK OD2 ASP B 111 MG MG B 204 1555 7555 2.12 LINK OD1 ASP B 113 CA CA B 202 1555 1555 2.50 LINK O TYR B 115 CA CA B 202 1555 1555 2.24 LINK OE1 GLU B 120 CA CA B 202 1555 1555 2.48 LINK OE2 GLU B 120 CA CA B 202 1555 1555 2.49 LINK OD1 ASP B 157 NA NA B 203 1555 1555 2.28 LINK OD1 ASN B 159 NA NA B 203 1555 1555 2.36 LINK OD1 ASP B 161 NA NA B 203 1555 1555 2.40 LINK O LYS B 163 NA NA B 203 1555 1555 2.28 LINK OE1 GLU B 168 NA NA B 203 1555 1555 2.39 LINK OE2 GLU B 168 NA NA B 203 1555 1555 2.51 LINK CA CA B 201 O HOH B 352 1555 1555 2.31 LINK CA CA B 202 O HOH B 372 1555 1555 2.45 LINK NA NA B 203 O HOH B 309 1555 1555 2.01 LINK MG MG B 204 O HOH B 310 1555 1555 2.19 LINK MG MG B 204 O HOH B 310 1555 7555 2.29 LINK MG MG B 204 O HOH B 359 1555 1555 2.13 LINK MG MG B 204 O HOH B 359 1555 7555 2.13 LINK MG MG B 204 O HOH B 386 1555 1555 2.10 LINK MG MG B 204 O HOH B 386 1555 7555 2.10 CRYST1 56.861 56.861 134.612 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017587 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007429 0.00000