HEADER STRUCTURAL PROTEIN 01-AUG-22 8ALM TITLE X-RAY STRUCTURE OF HUMAN NCS-1 BOUND TO RIC-8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL CALCIUM SENSOR 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: NCS-1,FREQUENIN HOMOLOG,FREQUENIN-LIKE PROTEIN,FREQUENIN- COMPND 5 LIKE UBIQUITOUS PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SYNEMBRYN-A; COMPND 9 CHAIN: P; COMPND 10 SYNONYM: PROTEIN RIC-8A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCS1, FLUP, FREQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: NORWAY RAT; SOURCE 12 ORGANISM_TAXID: 10116 KEYWDS NCS-1, RIC-8A, COMPLEX, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MUNOZ-REYES,M.J.SANCHEZ-BARRENA REVDAT 2 10-JAN-24 8ALM 1 JRNL REVDAT 1 13-DEC-23 8ALM 0 JRNL AUTH D.MUNOZ-REYES,L.J.MCCLELLAND,S.ARROYO-UREA,S.SANCHEZ-YEPES, JRNL AUTH 2 J.SABIN,S.PEREZ-SUAREZ,M.MENENDEZ,A.MANSILLA, JRNL AUTH 3 J.GARCIA-NAFRIA,S.SPRANG,M.J.SANCHEZ-BARRENA JRNL TITL THE NEURONAL CALCIUM SENSOR NCS-1 REGULATES THE JRNL TITL 2 PHOSPHORYLATION STATE AND ACTIVITY OF THE G ALPHA CHAPERONE JRNL TITL 3 AND GEF RIC-8A. JRNL REF ELIFE V. 12 2023 JRNL REFN ESSN 2050-084X JRNL PMID 38018500 JRNL DOI 10.7554/ELIFE.86151 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 17665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.2000 - 3.3700 1.00 3259 177 0.1952 0.2276 REMARK 3 2 3.3700 - 2.6700 1.00 3093 146 0.2088 0.2354 REMARK 3 3 2.6700 - 2.3400 1.00 3060 156 0.2235 0.3050 REMARK 3 4 2.3400 - 2.1200 1.00 3015 148 0.2046 0.3004 REMARK 3 5 2.1200 - 1.9700 0.98 2980 131 0.2662 0.3119 REMARK 3 6 1.9700 - 1.8540 0.48 1431 69 0.3689 0.4621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1676 REMARK 3 ANGLE : 1.136 2254 REMARK 3 CHIRALITY : 0.054 235 REMARK 3 PLANARITY : 0.013 295 REMARK 3 DIHEDRAL : 8.393 230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0671 38.8466 21.0041 REMARK 3 T TENSOR REMARK 3 T11: 0.6222 T22: 0.4239 REMARK 3 T33: 0.8356 T12: -0.1467 REMARK 3 T13: 0.0978 T23: -0.1304 REMARK 3 L TENSOR REMARK 3 L11: 9.8879 L22: 5.7398 REMARK 3 L33: 5.9133 L12: 3.0211 REMARK 3 L13: 3.4081 L23: 2.1719 REMARK 3 S TENSOR REMARK 3 S11: 0.2610 S12: -0.1593 S13: 2.1478 REMARK 3 S21: 0.4089 S22: -0.0484 S23: -0.9357 REMARK 3 S31: -1.5268 S32: 1.2537 S33: -0.0778 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3560 22.9626 27.4997 REMARK 3 T TENSOR REMARK 3 T11: 0.2973 T22: 0.4874 REMARK 3 T33: 0.2328 T12: -0.0233 REMARK 3 T13: 0.0388 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 4.9424 L22: 2.5835 REMARK 3 L33: 4.1389 L12: 0.8084 REMARK 3 L13: 0.6051 L23: 1.3638 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -1.1412 S13: -0.0466 REMARK 3 S21: 0.5298 S22: -0.0662 S23: -0.0988 REMARK 3 S31: 0.3342 S32: 0.1263 S33: 0.0976 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1495 20.3117 18.0935 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.2652 REMARK 3 T33: 0.1738 T12: -0.0032 REMARK 3 T13: 0.0199 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 4.1097 L22: 3.4942 REMARK 3 L33: 1.9125 L12: -0.1911 REMARK 3 L13: 0.3066 L23: 2.2072 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.0617 S13: 0.0642 REMARK 3 S21: 0.0150 S22: 0.0826 S23: -0.2948 REMARK 3 S31: 0.0491 S32: 0.3397 S33: -0.0624 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5746 5.8592 11.3280 REMARK 3 T TENSOR REMARK 3 T11: 0.2881 T22: 0.2160 REMARK 3 T33: 0.3723 T12: 0.0149 REMARK 3 T13: 0.0445 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.3245 L22: 4.2122 REMARK 3 L33: 1.5258 L12: -0.2783 REMARK 3 L13: 0.0415 L23: 1.9887 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.1224 S13: -0.7859 REMARK 3 S21: 0.0044 S22: -0.1006 S23: 0.0276 REMARK 3 S31: 0.3401 S32: 0.0401 S33: 0.1039 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8514 6.0590 2.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.3596 T22: 0.4028 REMARK 3 T33: 0.5340 T12: -0.0283 REMARK 3 T13: -0.0538 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 4.9706 L22: 4.1049 REMARK 3 L33: 5.8143 L12: 0.9339 REMARK 3 L13: -1.7523 L23: 0.2628 REMARK 3 S TENSOR REMARK 3 S11: -0.1504 S12: 0.6531 S13: -0.8027 REMARK 3 S21: -0.3067 S22: -0.0329 S23: 1.0351 REMARK 3 S31: 0.3972 S32: -0.8319 S33: 0.1603 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 402 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4958 5.5073 22.9999 REMARK 3 T TENSOR REMARK 3 T11: 1.0134 T22: 1.5079 REMARK 3 T33: 1.0282 T12: -0.0503 REMARK 3 T13: -0.1819 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 2.7509 L22: 0.6610 REMARK 3 L33: 3.2429 L12: 1.3697 REMARK 3 L13: -2.9751 L23: -1.4730 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: -0.4393 S13: -0.1437 REMARK 3 S21: 0.5048 S22: -0.2390 S23: 0.3285 REMARK 3 S31: 0.1554 S32: -0.3704 S33: 0.3546 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 407 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0782 6.7413 13.8072 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.2480 REMARK 3 T33: 0.4284 T12: 0.0163 REMARK 3 T13: 0.0825 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 2.0416 L22: 5.7855 REMARK 3 L33: 2.0790 L12: 0.9717 REMARK 3 L13: -2.7906 L23: 2.2990 REMARK 3 S TENSOR REMARK 3 S11: -0.3824 S12: -0.3305 S13: -0.5907 REMARK 3 S21: 0.1722 S22: 0.2100 S23: 0.2941 REMARK 3 S31: 0.9693 S32: 0.1398 S33: 0.3358 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 414 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7720 17.0514 23.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.3979 T22: 0.3626 REMARK 3 T33: 0.3403 T12: 0.0002 REMARK 3 T13: 0.0576 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 5.2774 L22: 2.5137 REMARK 3 L33: 2.1805 L12: 3.7032 REMARK 3 L13: 3.5454 L23: 7.3787 REMARK 3 S TENSOR REMARK 3 S11: -0.2124 S12: -0.9348 S13: 0.3394 REMARK 3 S21: 0.5651 S22: -0.5678 S23: 0.9135 REMARK 3 S31: 0.5227 S32: -0.3327 S33: 0.3572 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ALM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979263 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS 1.0.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17666 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.854 REMARK 200 RESOLUTION RANGE LOW (A) : 52.201 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 100 MM SODIUM ACETATE REMARK 280 PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.26600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.31950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.31950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.63300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.31950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.31950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.89900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.31950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.31950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.63300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.31950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.31950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 100.89900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.26600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 PRO B 177 REMARK 465 SER P 400 REMARK 465 GLU P 401 REMARK 465 PRO P 430 REMARK 465 GLU P 431 REMARK 465 GLY P 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 173 O HOH B 301 1.60 REMARK 500 OG SER B 173 O HOH B 301 2.02 REMARK 500 OE1 GLU B 171 O HOH B 302 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG P 405 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE B 204 REMARK 610 1PE P 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 OD1 REMARK 620 2 ASN B 75 OD1 81.0 REMARK 620 3 ASP B 77 OD1 87.5 79.9 REMARK 620 4 ARG B 79 O 84.0 156.7 81.8 REMARK 620 5 GLU B 84 OE1 108.3 126.8 150.0 74.9 REMARK 620 6 GLU B 84 OE2 94.2 74.7 154.0 124.2 52.8 REMARK 620 7 HOH B 347 O 167.3 92.7 80.6 98.4 84.3 94.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 ASP B 111 OD1 82.7 REMARK 620 3 ASP B 113 OD1 84.2 78.8 REMARK 620 4 TYR B 115 O 81.7 154.0 78.9 REMARK 620 5 GLU B 120 OE1 113.0 126.9 149.1 78.6 REMARK 620 6 GLU B 120 OE2 101.2 76.3 153.6 127.3 51.5 REMARK 620 7 HOH B 366 O 168.6 88.1 87.5 104.3 77.9 82.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 157 OD1 REMARK 620 2 ASN B 159 OD1 80.5 REMARK 620 3 ASP B 161 OD1 82.2 82.8 REMARK 620 4 LYS B 163 O 91.5 155.6 73.3 REMARK 620 5 GLU B 168 OE1 106.4 126.6 149.9 77.7 REMARK 620 6 GLU B 168 OE2 90.0 72.7 155.2 130.7 54.9 REMARK 620 7 HOH B 314 O 162.1 93.0 80.4 87.7 90.9 104.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AHY RELATED DB: PDB DBREF 8ALM B 1 177 UNP P62166 NCS1_HUMAN 1 177 DBREF 8ALM P 400 432 UNP Q80ZG1 RIC8A_RAT 400 432 SEQRES 1 B 177 MET GLY LYS SER ASN SER LYS LEU LYS PRO GLU VAL VAL SEQRES 2 B 177 GLU GLU LEU THR ARG LYS THR TYR PHE THR GLU LYS GLU SEQRES 3 B 177 VAL GLN GLN TRP TYR LYS GLY PHE ILE LYS ASP CYS PRO SEQRES 4 B 177 SER GLY GLN LEU ASP ALA ALA GLY PHE GLN LYS ILE TYR SEQRES 5 B 177 LYS GLN PHE PHE PRO PHE GLY ASP PRO THR LYS PHE ALA SEQRES 6 B 177 THR PHE VAL PHE ASN VAL PHE ASP GLU ASN LYS ASP GLY SEQRES 7 B 177 ARG ILE GLU PHE SER GLU PHE ILE GLN ALA LEU SER VAL SEQRES 8 B 177 THR SER ARG GLY THR LEU ASP GLU LYS LEU ARG TRP ALA SEQRES 9 B 177 PHE LYS LEU TYR ASP LEU ASP ASN ASP GLY TYR ILE THR SEQRES 10 B 177 ARG ASN GLU MET LEU ASP ILE VAL ASP ALA ILE TYR GLN SEQRES 11 B 177 MET VAL GLY ASN THR VAL GLU LEU PRO GLU GLU GLU ASN SEQRES 12 B 177 THR PRO GLU LYS ARG VAL ASP ARG ILE PHE ALA MET MET SEQRES 13 B 177 ASP LYS ASN ALA ASP GLY LYS LEU THR LEU GLN GLU PHE SEQRES 14 B 177 GLN GLU GLY SER LYS ALA ASP PRO SEQRES 1 P 33 SER GLU SER VAL PRO ARG PHE ILE LYS TYR THR GLY TYR SEQRES 2 P 33 GLY ASN ALA ALA GLY LEU LEU ALA ALA ARG GLY LEU MET SEQRES 3 P 33 ALA GLY GLY ARG PRO GLU GLY HET CA B 201 1 HET CA B 202 1 HET NA B 203 1 HET 1PE B 204 9 HET GOL B 205 12 HET CL P 501 1 HET 1PE P 502 14 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 5 NA NA 1+ FORMUL 6 1PE 2(C10 H22 O6) FORMUL 7 GOL C3 H8 O3 FORMUL 8 CL CL 1- FORMUL 10 HOH *116(H2 O) HELIX 1 AA1 LYS B 9 LYS B 19 1 11 HELIX 2 AA2 THR B 23 CYS B 38 1 16 HELIX 3 AA3 ASP B 44 PHE B 56 1 13 HELIX 4 AA4 PRO B 61 ASP B 73 1 13 HELIX 5 AA5 PHE B 82 GLY B 95 1 14 HELIX 6 AA6 THR B 96 ASP B 109 1 14 HELIX 7 AA7 ARG B 118 GLY B 133 1 16 HELIX 8 AA8 LEU B 138 GLU B 142 5 5 HELIX 9 AA9 THR B 144 ASP B 157 1 14 HELIX 10 AB1 THR B 165 GLU B 171 1 7 HELIX 11 AB2 PRO P 404 THR P 410 5 7 HELIX 12 AB3 GLY P 413 GLY P 428 1 16 SHEET 1 AA1 2 GLN B 42 LEU B 43 0 SHEET 2 AA1 2 ILE B 80 GLU B 81 -1 O ILE B 80 N LEU B 43 SHEET 1 AA2 2 ILE B 116 THR B 117 0 SHEET 2 AA2 2 LYS B 163 LEU B 164 -1 O LEU B 164 N ILE B 116 LINK OD1 ASP B 73 CA CA B 201 1555 1555 2.27 LINK OD1 ASN B 75 CA CA B 201 1555 1555 2.40 LINK OD1 ASP B 77 CA CA B 201 1555 1555 2.41 LINK O ARG B 79 CA CA B 201 1555 1555 2.29 LINK OE1 GLU B 84 CA CA B 201 1555 1555 2.46 LINK OE2 GLU B 84 CA CA B 201 1555 1555 2.48 LINK OD1 ASP B 109 CA CA B 202 1555 1555 2.41 LINK OD1 ASP B 111 CA CA B 202 1555 1555 2.30 LINK OD1 ASP B 113 CA CA B 202 1555 1555 2.44 LINK O TYR B 115 CA CA B 202 1555 1555 2.31 LINK OE1 GLU B 120 CA CA B 202 1555 1555 2.53 LINK OE2 GLU B 120 CA CA B 202 1555 1555 2.54 LINK OD1 ASP B 157 NA NA B 203 1555 1555 2.18 LINK OD1 ASN B 159 NA NA B 203 1555 1555 2.28 LINK OD1 ASP B 161 NA NA B 203 1555 1555 2.32 LINK O LYS B 163 NA NA B 203 1555 1555 2.40 LINK OE1 GLU B 168 NA NA B 203 1555 1555 2.42 LINK OE2 GLU B 168 NA NA B 203 1555 1555 2.43 LINK CA CA B 201 O HOH B 347 1555 1555 2.45 LINK CA CA B 202 O HOH B 366 1555 1555 2.40 LINK NA NA B 203 O HOH B 314 1555 1555 2.12 CRYST1 56.639 56.639 134.532 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007433 0.00000