HEADER UNKNOWN FUNCTION 03-AUG-22 8AMH TITLE THE CRYSTAL STRUCTURE OF WT APO AGROAVIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGROAVIDIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: AGROAVIDIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM SP. AAP43; SOURCE 3 ORGANISM_TAXID: 1523420; SOURCE 4 GENE: IP76_08565; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOTIN BINDING PROTEIN, AVIDIN, BIOTIN, HIGH AFFINITY SYSTEMS, KEYWDS 2 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,J.BANA REVDAT 3 01-MAY-24 8AMH 1 REMARK REVDAT 2 02-AUG-23 8AMH 1 JRNL REVDAT 1 12-APR-23 8AMH 0 JRNL AUTH J.BANA,J.WARWAR,E.A.BAYER,O.LIVNAH JRNL TITL SELF-ASSEMBLY OF A DIMERIC AVIDIN INTO UNIQUE HIGHER-ORDER JRNL TITL 2 OLIGOMERS. JRNL REF FEBS J. V. 290 3563 2023 JRNL REFN ISSN 1742-464X JRNL PMID 36853192 JRNL DOI 10.1111/FEBS.16764 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 47014 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2548 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3767 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3346 ; 0.005 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5123 ; 1.687 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7661 ; 1.474 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 7.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;28.242 ;22.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;13.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 489 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4440 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 964 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1976 ; 2.530 ; 2.811 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1975 ; 2.520 ; 2.809 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2463 ; 3.619 ; 4.201 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2464 ; 3.619 ; 4.203 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1791 ; 3.426 ; 3.141 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1792 ; 3.425 ; 3.142 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2661 ; 5.155 ; 4.546 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4039 ; 6.531 ;32.445 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4027 ; 6.531 ;32.407 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8AMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID09 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 44.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: RHIZAVIDIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M MGCL2, 0.1 M BIS REMARK 280 -TRIS PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.42650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.81950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.42650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.81950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 PHE A 6 REMARK 465 ASN A 7 REMARK 465 ALA A 8 REMARK 465 TYR A 132 REMARK 465 ASP A 133 REMARK 465 ALA A 134 REMARK 465 GLN A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 PRO A 138 REMARK 465 ALA A 139 REMARK 465 ASP A 140 REMARK 465 LYS A 141 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 GLY B 4 REMARK 465 PRO B 5 REMARK 465 PHE B 6 REMARK 465 ASN B 7 REMARK 465 ALA B 8 REMARK 465 GLN B 9 REMARK 465 ASP B 133 REMARK 465 ALA B 134 REMARK 465 GLN B 135 REMARK 465 PRO B 136 REMARK 465 SER B 137 REMARK 465 PRO B 138 REMARK 465 ALA B 139 REMARK 465 ASP B 140 REMARK 465 LYS B 141 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 HIS C 3 REMARK 465 GLY C 4 REMARK 465 PRO C 5 REMARK 465 PHE C 6 REMARK 465 ASN C 7 REMARK 465 ALA C 8 REMARK 465 GLN C 9 REMARK 465 GLY C 10 REMARK 465 ALA C 134 REMARK 465 GLN C 135 REMARK 465 PRO C 136 REMARK 465 SER C 137 REMARK 465 PRO C 138 REMARK 465 ALA C 139 REMARK 465 ASP C 140 REMARK 465 LYS C 141 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 HIS D 3 REMARK 465 PHE D 98 REMARK 465 GLY D 99 REMARK 465 GLY D 100 REMARK 465 TYR D 132 REMARK 465 ASP D 133 REMARK 465 ALA D 134 REMARK 465 GLN D 135 REMARK 465 PRO D 136 REMARK 465 SER D 137 REMARK 465 PRO D 138 REMARK 465 ALA D 139 REMARK 465 ASP D 140 REMARK 465 LYS D 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 27 CD GLU C 27 OE1 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 15 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP B 15 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 79 14.66 -144.17 REMARK 500 SER C 18 126.44 -38.07 REMARK 500 ASP D 13 -162.27 -165.31 REMARK 500 ALA D 116 36.50 -91.40 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8AMH A 2 141 UNP A0A0N1ABZ3_9HYPH DBREF2 8AMH A A0A0N1ABZ3 19 158 DBREF1 8AMH B 2 141 UNP A0A0N1ABZ3_9HYPH DBREF2 8AMH B A0A0N1ABZ3 19 158 DBREF1 8AMH C 2 141 UNP A0A0N1ABZ3_9HYPH DBREF2 8AMH C A0A0N1ABZ3 19 158 DBREF1 8AMH D 2 141 UNP A0A0N1ABZ3_9HYPH DBREF2 8AMH D A0A0N1ABZ3 19 158 SEQADV 8AMH MET A 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AMH MET B 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AMH MET C 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQADV 8AMH MET D 1 UNP A0A0N1ABZ INITIATING METHIONINE SEQRES 1 A 141 MET ALA HIS GLY PRO PHE ASN ALA GLN GLY PHE THR ASP SEQRES 2 A 141 PHE ASP SER LEU SER GLY THR SER THR THR TRP VAL ASN SEQRES 3 A 141 GLU LEU GLY SER VAL MET THR ILE ASP VAL ASP ARG LYS SEQRES 4 A 141 GLY GLY VAL THR GLY TYR PHE VAL ASN ASN ALA PRO GLY SEQRES 5 A 141 THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SER GLY HIS SEQRES 6 A 141 ALA HIS GLY SER THR ILE ALA PHE SER VAL VAL TRP SER SEQRES 7 A 141 ASN GLY ILE ALA ASP CYS ARG SER ALA THR SER TRP ALA SEQRES 8 A 141 GLY TYR ALA ARG LYS THR PHE GLY GLY GLY VAL GLN ILE SEQRES 9 A 141 VAL THR GLN TRP SER LEU ALA PHE VAL GLY LYS ALA GLY SEQRES 10 A 141 GLY LYS ILE GLU THR GLY GLN ASN VAL PHE THR TYR GLN SEQRES 11 A 141 ALA TYR ASP ALA GLN PRO SER PRO ALA ASP LYS SEQRES 1 B 141 MET ALA HIS GLY PRO PHE ASN ALA GLN GLY PHE THR ASP SEQRES 2 B 141 PHE ASP SER LEU SER GLY THR SER THR THR TRP VAL ASN SEQRES 3 B 141 GLU LEU GLY SER VAL MET THR ILE ASP VAL ASP ARG LYS SEQRES 4 B 141 GLY GLY VAL THR GLY TYR PHE VAL ASN ASN ALA PRO GLY SEQRES 5 B 141 THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SER GLY HIS SEQRES 6 B 141 ALA HIS GLY SER THR ILE ALA PHE SER VAL VAL TRP SER SEQRES 7 B 141 ASN GLY ILE ALA ASP CYS ARG SER ALA THR SER TRP ALA SEQRES 8 B 141 GLY TYR ALA ARG LYS THR PHE GLY GLY GLY VAL GLN ILE SEQRES 9 B 141 VAL THR GLN TRP SER LEU ALA PHE VAL GLY LYS ALA GLY SEQRES 10 B 141 GLY LYS ILE GLU THR GLY GLN ASN VAL PHE THR TYR GLN SEQRES 11 B 141 ALA TYR ASP ALA GLN PRO SER PRO ALA ASP LYS SEQRES 1 C 141 MET ALA HIS GLY PRO PHE ASN ALA GLN GLY PHE THR ASP SEQRES 2 C 141 PHE ASP SER LEU SER GLY THR SER THR THR TRP VAL ASN SEQRES 3 C 141 GLU LEU GLY SER VAL MET THR ILE ASP VAL ASP ARG LYS SEQRES 4 C 141 GLY GLY VAL THR GLY TYR PHE VAL ASN ASN ALA PRO GLY SEQRES 5 C 141 THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SER GLY HIS SEQRES 6 C 141 ALA HIS GLY SER THR ILE ALA PHE SER VAL VAL TRP SER SEQRES 7 C 141 ASN GLY ILE ALA ASP CYS ARG SER ALA THR SER TRP ALA SEQRES 8 C 141 GLY TYR ALA ARG LYS THR PHE GLY GLY GLY VAL GLN ILE SEQRES 9 C 141 VAL THR GLN TRP SER LEU ALA PHE VAL GLY LYS ALA GLY SEQRES 10 C 141 GLY LYS ILE GLU THR GLY GLN ASN VAL PHE THR TYR GLN SEQRES 11 C 141 ALA TYR ASP ALA GLN PRO SER PRO ALA ASP LYS SEQRES 1 D 141 MET ALA HIS GLY PRO PHE ASN ALA GLN GLY PHE THR ASP SEQRES 2 D 141 PHE ASP SER LEU SER GLY THR SER THR THR TRP VAL ASN SEQRES 3 D 141 GLU LEU GLY SER VAL MET THR ILE ASP VAL ASP ARG LYS SEQRES 4 D 141 GLY GLY VAL THR GLY TYR PHE VAL ASN ASN ALA PRO GLY SEQRES 5 D 141 THR GLY CYS ARG GLY LEU PRO TYR ASP LEU SER GLY HIS SEQRES 6 D 141 ALA HIS GLY SER THR ILE ALA PHE SER VAL VAL TRP SER SEQRES 7 D 141 ASN GLY ILE ALA ASP CYS ARG SER ALA THR SER TRP ALA SEQRES 8 D 141 GLY TYR ALA ARG LYS THR PHE GLY GLY GLY VAL GLN ILE SEQRES 9 D 141 VAL THR GLN TRP SER LEU ALA PHE VAL GLY LYS ALA GLY SEQRES 10 D 141 GLY LYS ILE GLU THR GLY GLN ASN VAL PHE THR TYR GLN SEQRES 11 D 141 ALA TYR ASP ALA GLN PRO SER PRO ALA ASP LYS FORMUL 5 HOH *158(H2 O) HELIX 1 AA1 PHE A 14 SER A 18 5 5 HELIX 2 AA2 ASP B 13 SER B 18 5 6 HELIX 3 AA3 ASP C 13 SER C 18 5 6 HELIX 4 AA4 ASP D 13 SER D 18 5 6 SHEET 1 AA1 9 THR A 22 ASN A 26 0 SHEET 2 AA1 9 VAL A 31 VAL A 36 -1 O ILE A 34 N THR A 22 SHEET 3 AA1 9 GLY A 41 VAL A 47 -1 O THR A 43 N ASP A 35 SHEET 4 AA1 9 PRO A 59 HIS A 67 -1 O GLY A 64 N VAL A 42 SHEET 5 AA1 9 THR A 70 SER A 78 -1 O SER A 74 N SER A 63 SHEET 6 AA1 9 ASP A 83 THR A 97 -1 O TRP A 90 N PHE A 73 SHEET 7 AA1 9 GLY A 101 GLY A 114 -1 O GLN A 103 N ARG A 95 SHEET 8 AA1 9 GLY A 117 GLN A 130 -1 O GLY A 123 N TRP A 108 SHEET 9 AA1 9 THR A 22 ASN A 26 -1 N VAL A 25 O THR A 128 SHEET 1 AA2 9 THR B 20 VAL B 25 0 SHEET 2 AA2 9 VAL B 31 VAL B 36 -1 O MET B 32 N TRP B 24 SHEET 3 AA2 9 GLY B 41 VAL B 47 -1 O THR B 43 N ASP B 35 SHEET 4 AA2 9 TYR B 60 HIS B 67 -1 O TYR B 60 N PHE B 46 SHEET 5 AA2 9 THR B 70 SER B 78 -1 O THR B 70 N HIS B 67 SHEET 6 AA2 9 ASP B 83 LYS B 96 -1 O CYS B 84 N TRP B 77 SHEET 7 AA2 9 VAL B 102 GLY B 114 -1 O GLN B 107 N ALA B 91 SHEET 8 AA2 9 GLY B 117 GLN B 130 -1 O ASN B 125 N THR B 106 SHEET 9 AA2 9 THR B 20 VAL B 25 -1 N VAL B 25 O THR B 128 SHEET 1 AA3 9 THR C 20 VAL C 25 0 SHEET 2 AA3 9 VAL C 31 VAL C 36 -1 O ILE C 34 N THR C 22 SHEET 3 AA3 9 GLY C 41 VAL C 47 -1 O THR C 43 N ASP C 35 SHEET 4 AA3 9 PRO C 59 HIS C 67 -1 O GLY C 64 N VAL C 42 SHEET 5 AA3 9 THR C 70 SER C 78 -1 O THR C 70 N HIS C 67 SHEET 6 AA3 9 ASP C 83 LYS C 96 -1 O TRP C 90 N PHE C 73 SHEET 7 AA3 9 VAL C 102 GLY C 114 -1 O VAL C 105 N TYR C 93 SHEET 8 AA3 9 GLY C 117 ASP C 133 -1 O GLY C 123 N TRP C 108 SHEET 9 AA3 9 THR C 20 VAL C 25 -1 N VAL C 25 O THR C 128 SHEET 1 AA4 9 SER D 21 VAL D 25 0 SHEET 2 AA4 9 VAL D 31 VAL D 36 -1 O MET D 32 N TRP D 24 SHEET 3 AA4 9 GLY D 41 VAL D 47 -1 O THR D 43 N ASP D 35 SHEET 4 AA4 9 TYR D 60 HIS D 67 -1 O GLY D 64 N VAL D 42 SHEET 5 AA4 9 THR D 70 SER D 78 -1 O ALA D 72 N HIS D 65 SHEET 6 AA4 9 ASP D 83 ARG D 95 -1 O TRP D 90 N PHE D 73 SHEET 7 AA4 9 GLN D 103 GLY D 114 -1 O SER D 109 N SER D 89 SHEET 8 AA4 9 GLY D 117 TYR D 129 -1 O ASN D 125 N THR D 106 SHEET 9 AA4 9 SER D 21 VAL D 25 -1 N VAL D 25 O THR D 128 SSBOND 1 CYS A 55 CYS A 84 1555 1555 2.07 SSBOND 2 CYS B 55 CYS B 84 1555 1555 2.07 SSBOND 3 CYS C 55 CYS C 84 1555 1555 2.06 SSBOND 4 CYS D 55 CYS D 84 1555 1555 2.05 CRYST1 82.853 83.639 67.781 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014753 0.00000