HEADER REPLICATION 04-AUG-22 8AMU TITLE REPB PMV158 OBD DOMAIN BOUND TO DDR REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION PROTEIN REPB; COMPND 3 CHAIN: A, B, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*TP*CP*GP*GP*CP*GP*AP*CP*TP*TP*TP*TP*CP*GP*GP*CP*GP*AP*CP*TP*TP*TP* COMPND 8 T)-3'); COMPND 9 CHAIN: C, G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*AP*AP*AP*AP*GP*TP*CP*GP*CP*CP*GP*AP*AP*AP*AP*GP*TP*CP*GP*CP*CP*GP* COMPND 14 A)-3'); COMPND 15 CHAIN: D, H; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: REPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 10 ORGANISM_TAXID: 1311; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 14 ORGANISM_TAXID: 1311 KEYWDS ROLLING CIRCLE REPLICATION, REPB, PMV158, DDR REGION, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.AMODIO,C.MACHON,R.D.BOER,J.A.RUIZ-MASO,G.DEL SOLAR,M.COLL REVDAT 3 07-FEB-24 8AMU 1 REMARK REVDAT 2 01-MAR-23 8AMU 1 JRNL REVDAT 1 08-FEB-23 8AMU 0 JRNL AUTH C.MACHON,J.A.RUIZ-MASO,J.AMODIO,D.R.BOER, JRNL AUTH 2 L.BORDANABA-RUISECO,K.BURY,I.KONIECZNY,G.DEL SOLAR,M.COLL JRNL TITL STRUCTURES OF PMV158 REPLICATION INITIATOR REPB WITH AND JRNL TITL 2 WITHOUT DNA REVEAL A FLEXIBLE DUAL-FUNCTION PROTEIN. JRNL REF NUCLEIC ACIDS RES. V. 51 1458 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36688326 JRNL DOI 10.1093/NAR/GKAC1271 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC4_4425 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 17954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6900 - 5.7100 0.94 2661 152 0.1970 0.2589 REMARK 3 2 5.7100 - 4.5400 0.95 2583 134 0.1947 0.2258 REMARK 3 3 4.5400 - 3.9700 0.95 2528 156 0.2014 0.2440 REMARK 3 4 3.9700 - 3.6100 0.95 2539 143 0.2459 0.3526 REMARK 3 5 3.6100 - 3.3500 0.95 2500 130 0.2778 0.3331 REMARK 3 6 3.3500 - 3.1500 0.87 2346 107 0.3068 0.3269 REMARK 3 7 3.1500 - 3.0000 0.72 1876 99 0.3349 0.4183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.513 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.677 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6485 REMARK 3 ANGLE : 1.814 9142 REMARK 3 CHIRALITY : 0.089 1029 REMARK 3 PLANARITY : 0.012 814 REMARK 3 DIHEDRAL : 29.345 1477 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "E" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "F" and resid 2 through 132) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "G" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "H" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292121781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17954 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 24.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 24.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL PH 8.0 50 MM MGCL2 23 % REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.80950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 LYS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLN A 1 REMARK 465 MET B -7 REMARK 465 LYS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLN B 1 REMARK 465 MET E -7 REMARK 465 LYS E -6 REMARK 465 HIS E -5 REMARK 465 HIS E -4 REMARK 465 HIS E -3 REMARK 465 HIS E -2 REMARK 465 HIS E -1 REMARK 465 HIS E 0 REMARK 465 GLN E 1 REMARK 465 MET F -7 REMARK 465 LYS F -6 REMARK 465 HIS F -5 REMARK 465 HIS F -4 REMARK 465 HIS F -3 REMARK 465 HIS F -2 REMARK 465 HIS F -1 REMARK 465 HIS F 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG E 72 OP2 DG G 8 2.11 REMARK 500 OG SER E 104 OD1 ASP E 106 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 44 OD1 ASP B 129 1545 1.92 REMARK 500 O GLY A 48 NZ LYS A 117 1545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 7 O3' DG C 7 C3' -0.091 REMARK 500 DC C 9 O3' DC C 9 C3' -0.037 REMARK 500 DC C 12 O3' DC C 12 C3' -0.043 REMARK 500 DT C 13 O3' DT C 13 C3' -0.038 REMARK 500 DG D 20 O3' DG D 20 C3' -0.040 REMARK 500 DG D 26 O3' DG D 26 C3' -0.053 REMARK 500 DA D 28 O3' DA D 28 C3' -0.046 REMARK 500 DC D 33 O3' DC D 33 C3' -0.058 REMARK 500 DC G 6 O3' DC G 6 C3' -0.040 REMARK 500 DG G 7 O3' DG G 7 C3' -0.040 REMARK 500 DA H 19 O3' DA H 19 C3' -0.053 REMARK 500 DC H 25 O3' DC H 25 C3' -0.042 REMARK 500 DG H 34 O3' DG H 34 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 12 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 LYS A 73 CA - CB - CG ANGL. DEV. = -16.1 DEGREES REMARK 500 LYS A 73 CD - CE - NZ ANGL. DEV. = 21.5 DEGREES REMARK 500 LYS B 50 CD - CE - NZ ANGL. DEV. = -14.3 DEGREES REMARK 500 LEU B 77 CB - CG - CD1 ANGL. DEV. = 11.4 DEGREES REMARK 500 GLU B 81 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP B 106 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP B 106 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP B 106 CB - CG - OD2 ANGL. DEV. = -9.5 DEGREES REMARK 500 LYS B 117 CB - CG - CD ANGL. DEV. = 16.8 DEGREES REMARK 500 DG C 7 O3' - P - OP2 ANGL. DEV. = 8.5 DEGREES REMARK 500 DC C 9 O5' - P - OP1 ANGL. DEV. = -9.7 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC C 20 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 22 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 25 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA D 19 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC D 25 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA D 27 O5' - P - OP1 ANGL. DEV. = -8.2 DEGREES REMARK 500 DA D 27 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG D 31 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC D 36 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 LYS E 3 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LYS F 43 CA - CB - CG ANGL. DEV. = -15.4 DEGREES REMARK 500 LYS F 43 CD - CE - NZ ANGL. DEV. = -19.4 DEGREES REMARK 500 GLU F 81 CA - CB - CG ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG F 130 CA - CB - CG ANGL. DEV. = 21.9 DEGREES REMARK 500 DC G 9 O5' - P - OP1 ANGL. DEV. = -6.1 DEGREES REMARK 500 DC G 12 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG G 19 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA H 18 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA H 19 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG H 20 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC H 25 O5' - P - OP1 ANGL. DEV. = -8.8 DEGREES REMARK 500 DA H 27 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA H 30 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT H 32 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC H 33 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC H 36 O3' - P - OP2 ANGL. DEV. = 8.6 DEGREES REMARK 500 DC H 36 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC H 36 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA H 38 O5' - P - OP1 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 156.21 -47.07 REMARK 500 LYS A 50 -74.76 -74.59 REMARK 500 SER B 36 157.02 -49.91 REMARK 500 SER B 45 49.99 -83.03 REMARK 500 SER E 36 153.89 -48.35 REMARK 500 ALA F 2 -132.87 44.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 308 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A 309 DISTANCE = 8.67 ANGSTROMS REMARK 525 HOH E 306 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH F 204 DISTANCE = 6.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 ASP A 42 OD2 83.7 REMARK 620 3 HIS A 55 NE2 74.7 78.5 REMARK 620 4 HIS A 57 NE2 81.7 160.4 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 42 OD2 REMARK 620 2 HIS B 55 NE2 113.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 39 ND1 REMARK 620 2 ASP E 42 OD2 85.7 REMARK 620 3 HIS E 55 NE2 68.9 84.1 REMARK 620 4 HIS E 57 NE2 92.3 174.2 90.1 REMARK 620 N 1 2 3 DBREF 8AMU A 2 132 UNP P13921 REPB_STRAG 2 132 DBREF 8AMU B 2 132 UNP P13921 REPB_STRAG 2 132 DBREF 8AMU C 5 27 PDB 8AMU 8AMU 5 27 DBREF 8AMU D 16 38 PDB 8AMU 8AMU 16 38 DBREF 8AMU E 2 132 UNP P13921 REPB_STRAG 2 132 DBREF 8AMU F 2 132 UNP P13921 REPB_STRAG 2 132 DBREF 8AMU G 5 27 PDB 8AMU 8AMU 5 27 DBREF 8AMU H 16 38 PDB 8AMU 8AMU 16 38 SEQADV 8AMU MET A -7 UNP P13921 INITIATING METHIONINE SEQADV 8AMU LYS A -6 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS A -5 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS A -4 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS A -3 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS A -2 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS A -1 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS A 0 UNP P13921 EXPRESSION TAG SEQADV 8AMU GLN A 1 UNP P13921 EXPRESSION TAG SEQADV 8AMU MET B -7 UNP P13921 INITIATING METHIONINE SEQADV 8AMU LYS B -6 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS B -5 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS B -4 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS B -3 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS B -2 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS B -1 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS B 0 UNP P13921 EXPRESSION TAG SEQADV 8AMU GLN B 1 UNP P13921 EXPRESSION TAG SEQADV 8AMU MET E -7 UNP P13921 INITIATING METHIONINE SEQADV 8AMU LYS E -6 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS E -5 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS E -4 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS E -3 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS E -2 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS E -1 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS E 0 UNP P13921 EXPRESSION TAG SEQADV 8AMU GLN E 1 UNP P13921 EXPRESSION TAG SEQADV 8AMU MET F -7 UNP P13921 INITIATING METHIONINE SEQADV 8AMU LYS F -6 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS F -5 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS F -4 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS F -3 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS F -2 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS F -1 UNP P13921 EXPRESSION TAG SEQADV 8AMU HIS F 0 UNP P13921 EXPRESSION TAG SEQADV 8AMU GLN F 1 UNP P13921 EXPRESSION TAG SEQRES 1 A 140 MET LYS HIS HIS HIS HIS HIS HIS GLN ALA LYS GLU LYS SEQRES 2 A 140 ALA ARG TYR PHE THR PHE LEU LEU TYR PRO GLU SER ILE SEQRES 3 A 140 PRO SER ASP TRP GLU LEU LYS LEU GLU THR LEU GLY VAL SEQRES 4 A 140 PRO MET ALA ILE SER PRO LEU HIS ASP LYS ASP LYS SER SEQRES 5 A 140 SER ILE LYS GLY GLN LYS TYR LYS LYS ALA HIS TYR HIS SEQRES 6 A 140 VAL LEU TYR ILE ALA LYS ASN PRO VAL THR ALA ASP SER SEQRES 7 A 140 VAL ARG LYS LYS ILE LYS LEU LEU LEU GLY GLU LYS SER SEQRES 8 A 140 LEU ALA MET VAL GLN VAL VAL LEU ASN VAL GLU ASN MET SEQRES 9 A 140 TYR LEU TYR LEU THR HIS GLU SER LYS ASP ALA ILE ALA SEQRES 10 A 140 LYS LYS LYS HIS VAL TYR ASP LYS ALA ASP ILE LYS LEU SEQRES 11 A 140 ILE ASN ASN PHE ASP ILE ASP ARG TYR VAL SEQRES 1 B 140 MET LYS HIS HIS HIS HIS HIS HIS GLN ALA LYS GLU LYS SEQRES 2 B 140 ALA ARG TYR PHE THR PHE LEU LEU TYR PRO GLU SER ILE SEQRES 3 B 140 PRO SER ASP TRP GLU LEU LYS LEU GLU THR LEU GLY VAL SEQRES 4 B 140 PRO MET ALA ILE SER PRO LEU HIS ASP LYS ASP LYS SER SEQRES 5 B 140 SER ILE LYS GLY GLN LYS TYR LYS LYS ALA HIS TYR HIS SEQRES 6 B 140 VAL LEU TYR ILE ALA LYS ASN PRO VAL THR ALA ASP SER SEQRES 7 B 140 VAL ARG LYS LYS ILE LYS LEU LEU LEU GLY GLU LYS SER SEQRES 8 B 140 LEU ALA MET VAL GLN VAL VAL LEU ASN VAL GLU ASN MET SEQRES 9 B 140 TYR LEU TYR LEU THR HIS GLU SER LYS ASP ALA ILE ALA SEQRES 10 B 140 LYS LYS LYS HIS VAL TYR ASP LYS ALA ASP ILE LYS LEU SEQRES 11 B 140 ILE ASN ASN PHE ASP ILE ASP ARG TYR VAL SEQRES 1 C 23 DT DC DG DG DC DG DA DC DT DT DT DT DC SEQRES 2 C 23 DG DG DC DG DA DC DT DT DT DT SEQRES 1 D 23 DA DA DA DA DG DT DC DG DC DC DG DA DA SEQRES 2 D 23 DA DA DG DT DC DG DC DC DG DA SEQRES 1 E 140 MET LYS HIS HIS HIS HIS HIS HIS GLN ALA LYS GLU LYS SEQRES 2 E 140 ALA ARG TYR PHE THR PHE LEU LEU TYR PRO GLU SER ILE SEQRES 3 E 140 PRO SER ASP TRP GLU LEU LYS LEU GLU THR LEU GLY VAL SEQRES 4 E 140 PRO MET ALA ILE SER PRO LEU HIS ASP LYS ASP LYS SER SEQRES 5 E 140 SER ILE LYS GLY GLN LYS TYR LYS LYS ALA HIS TYR HIS SEQRES 6 E 140 VAL LEU TYR ILE ALA LYS ASN PRO VAL THR ALA ASP SER SEQRES 7 E 140 VAL ARG LYS LYS ILE LYS LEU LEU LEU GLY GLU LYS SER SEQRES 8 E 140 LEU ALA MET VAL GLN VAL VAL LEU ASN VAL GLU ASN MET SEQRES 9 E 140 TYR LEU TYR LEU THR HIS GLU SER LYS ASP ALA ILE ALA SEQRES 10 E 140 LYS LYS LYS HIS VAL TYR ASP LYS ALA ASP ILE LYS LEU SEQRES 11 E 140 ILE ASN ASN PHE ASP ILE ASP ARG TYR VAL SEQRES 1 F 140 MET LYS HIS HIS HIS HIS HIS HIS GLN ALA LYS GLU LYS SEQRES 2 F 140 ALA ARG TYR PHE THR PHE LEU LEU TYR PRO GLU SER ILE SEQRES 3 F 140 PRO SER ASP TRP GLU LEU LYS LEU GLU THR LEU GLY VAL SEQRES 4 F 140 PRO MET ALA ILE SER PRO LEU HIS ASP LYS ASP LYS SER SEQRES 5 F 140 SER ILE LYS GLY GLN LYS TYR LYS LYS ALA HIS TYR HIS SEQRES 6 F 140 VAL LEU TYR ILE ALA LYS ASN PRO VAL THR ALA ASP SER SEQRES 7 F 140 VAL ARG LYS LYS ILE LYS LEU LEU LEU GLY GLU LYS SER SEQRES 8 F 140 LEU ALA MET VAL GLN VAL VAL LEU ASN VAL GLU ASN MET SEQRES 9 F 140 TYR LEU TYR LEU THR HIS GLU SER LYS ASP ALA ILE ALA SEQRES 10 F 140 LYS LYS LYS HIS VAL TYR ASP LYS ALA ASP ILE LYS LEU SEQRES 11 F 140 ILE ASN ASN PHE ASP ILE ASP ARG TYR VAL SEQRES 1 G 23 DT DC DG DG DC DG DA DC DT DT DT DT DC SEQRES 2 G 23 DG DG DC DG DA DC DT DT DT DT SEQRES 1 H 23 DA DA DA DA DG DT DC DG DC DC DG DA DA SEQRES 2 H 23 DA DA DG DT DC DG DC DC DG DA HET MN A 201 1 HET MN B 201 1 HET MN E 201 1 HETNAM MN MANGANESE (II) ION FORMUL 9 MN 3(MN 2+) FORMUL 12 HOH *26(H2 O) HELIX 1 AA1 ASP A 21 LEU A 29 1 9 HELIX 2 AA2 ALA A 68 GLY A 80 1 13 HELIX 3 AA3 ASN A 92 LEU A 100 1 9 HELIX 4 AA4 SER A 104 LYS A 110 1 7 HELIX 5 AA5 ASP A 116 ILE A 120 5 5 HELIX 6 AA6 ASP A 127 VAL A 132 5 6 HELIX 7 AA7 ASP B 21 THR B 28 1 8 HELIX 8 AA8 ALA B 68 GLY B 80 1 13 HELIX 9 AA9 ASN B 92 TYR B 99 1 8 HELIX 10 AB1 LEU B 100 HIS B 102 5 3 HELIX 11 AB2 SER B 104 LYS B 110 1 7 HELIX 12 AB3 ASP B 116 ILE B 120 5 5 HELIX 13 AB4 ASP B 127 VAL B 132 1 6 HELIX 14 AB5 ASP E 21 LEU E 29 1 9 HELIX 15 AB6 ALA E 68 GLY E 80 1 13 HELIX 16 AB7 ASN E 92 LEU E 100 1 9 HELIX 17 AB8 SER E 104 LYS E 110 1 7 HELIX 18 AB9 ASP E 116 ILE E 120 5 5 HELIX 19 AC1 ASP E 127 VAL E 132 5 6 HELIX 20 AC2 ASP F 21 LEU F 26 1 6 HELIX 21 AC3 ALA F 68 GLY F 80 1 13 HELIX 22 AC4 ASN F 92 LEU F 100 1 9 HELIX 23 AC5 SER F 104 LYS F 110 1 7 HELIX 24 AC6 ASP F 116 ILE F 120 5 5 HELIX 25 AC7 ASP F 127 VAL F 132 5 6 SHEET 1 AA1 5 LEU A 84 VAL A 89 0 SHEET 2 AA1 5 LYS A 5 LEU A 13 -1 N THR A 10 O GLN A 88 SHEET 3 AA1 5 TYR A 56 THR A 67 -1 O TYR A 60 N PHE A 9 SHEET 4 AA1 5 MET A 33 ILE A 35 -1 N ALA A 34 O LEU A 59 SHEET 5 AA1 5 LYS A 121 ILE A 123 -1 O LYS A 121 N ILE A 35 SHEET 1 AA2 5 LEU B 84 VAL B 89 0 SHEET 2 AA2 5 LYS B 5 LEU B 13 -1 N THR B 10 O GLN B 88 SHEET 3 AA2 5 TYR B 56 THR B 67 -1 O TYR B 60 N PHE B 9 SHEET 4 AA2 5 MET B 33 ILE B 35 -1 N ALA B 34 O LEU B 59 SHEET 5 AA2 5 LYS B 121 ILE B 123 -1 O LYS B 121 N ILE B 35 SHEET 1 AA3 5 LEU E 84 VAL E 89 0 SHEET 2 AA3 5 LYS E 5 LEU E 13 -1 N THR E 10 O GLN E 88 SHEET 3 AA3 5 TYR E 56 THR E 67 -1 O VAL E 66 N ALA E 6 SHEET 4 AA3 5 MET E 33 ILE E 35 -1 N ALA E 34 O LEU E 59 SHEET 5 AA3 5 LYS E 121 ILE E 123 -1 O LYS E 121 N ILE E 35 SHEET 1 AA4 5 LEU F 84 VAL F 89 0 SHEET 2 AA4 5 LYS F 5 LEU F 13 -1 N THR F 10 O GLN F 88 SHEET 3 AA4 5 TYR F 56 THR F 67 -1 O VAL F 66 N ALA F 6 SHEET 4 AA4 5 MET F 33 ILE F 35 -1 N ALA F 34 O LEU F 59 SHEET 5 AA4 5 LYS F 121 ILE F 123 -1 O LYS F 121 N ILE F 35 LINK ND1 HIS A 39 MN MN A 201 1555 1555 2.71 LINK OD2 ASP A 42 MN MN A 201 1555 1555 2.72 LINK NE2 HIS A 55 MN MN A 201 1555 1555 2.53 LINK NE2 HIS A 57 MN MN A 201 1555 1555 2.38 LINK OD2 ASP B 42 MN MN B 201 1555 1555 2.59 LINK NE2 HIS B 55 MN MN B 201 1555 1555 2.64 LINK ND1 HIS E 39 MN MN E 201 1555 1555 2.76 LINK OD2 ASP E 42 MN MN E 201 1555 1555 2.69 LINK NE2 HIS E 55 MN MN E 201 1555 1555 2.65 LINK NE2 HIS E 57 MN MN E 201 1555 1555 2.52 CRYST1 49.234 33.619 289.672 90.00 93.51 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020311 0.000000 0.001246 0.00000 SCALE2 0.000000 0.029745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003459 0.00000 MTRIX1 1 0.963295 0.032401 0.266482 -20.59965 1 MTRIX2 1 -0.030896 0.999474 -0.009839 18.82726 1 MTRIX3 1 -0.266661 0.001244 0.963790 -16.50252 1 MTRIX1 2 0.999916 0.003536 0.012493 7.62551 1 MTRIX2 2 0.003462 -0.999976 0.005937 -165.61588 1 MTRIX3 2 0.012514 -0.005893 -0.999904 143.43658 1 MTRIX1 3 0.891146 0.031753 0.452604 -36.31591 1 MTRIX2 3 0.033809 -0.999422 0.003547 -183.68868 1 MTRIX3 3 0.452455 0.012142 -0.891705 147.27788 1 MTRIX1 4 0.991338 -0.021191 0.129616 -9.06556 1 MTRIX2 4 -0.023421 -0.999602 0.015707 -165.81200 1 MTRIX3 4 0.129232 -0.018607 -0.991440 136.36644 1 MTRIX1 5 0.988808 -0.002199 0.149180 -9.14812 1 MTRIX2 5 -0.005385 -0.999766 0.020960 -167.07402 1 MTRIX3 5 0.149099 -0.021528 -0.988588 135.09055 1