HEADER TRANSFERASE 11-AUG-22 8AQ3 TITLE IN SURFO STRUCTURE OF THE MEMBRANE INTEGRAL LIPOPROTEIN N- TITLE 2 ACYLTRANSFERASE LNT FROM E. COLI IN COMPLEX WITH PE COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN N-ACYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALP N-ACYLTRANSFERASE,COPPER HOMEOSTASIS PROTEIN CUTE; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LNT, CUTE, B0657, JW0654; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LNT, APOLIPOPROTEIN N-ACYLTRANSFERASE, BACTERIAL LIPOPROTEINS., KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-Y.HUANG,D.WEICHERT,C.BOLAND,L.SMITHERS,V.OLIERIC,M.WANG,M.CAFFREY REVDAT 2 07-FEB-24 8AQ3 1 REMARK REVDAT 1 12-JUL-23 8AQ3 0 JRNL AUTH L.SMITHERS,O.DEGTJARIK,D.WEICHERT,C.Y.HUANG,C.BOLAND, JRNL AUTH 2 K.BOWEN,A.OLUWOLE,C.LUTOMSKI,C.V.ROBINSON,E.M.SCANLAN, JRNL AUTH 3 M.WANG,V.OLIERIC,M.SHALEV-BENAMI,M.CAFFREY JRNL TITL STRUCTURE SNAPSHOTS REVEAL THE MECHANISM OF A BACTERIAL JRNL TITL 2 MEMBRANE LIPOPROTEIN N -ACYLTRANSFERASE. JRNL REF SCI ADV V. 9 F5799 2023 JRNL REFN ESSN 2375-2548 JRNL PMID 37390210 JRNL DOI 10.1126/SCIADV.ADF5799 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3494 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3760 - 6.3836 0.99 2809 148 0.1933 0.2012 REMARK 3 2 6.3836 - 5.0694 1.00 2740 144 0.1962 0.2317 REMARK 3 3 5.0694 - 4.4293 1.00 2736 144 0.1725 0.1615 REMARK 3 4 4.4293 - 4.0246 1.00 2685 142 0.2107 0.2062 REMARK 3 5 4.0246 - 3.7363 1.00 2709 142 0.2175 0.2440 REMARK 3 6 3.7363 - 3.5161 1.00 2688 142 0.2389 0.2558 REMARK 3 7 3.5161 - 3.3401 1.00 2685 141 0.2247 0.2519 REMARK 3 8 3.3401 - 3.1948 1.00 2687 141 0.2375 0.2673 REMARK 3 9 3.1948 - 3.0718 1.00 2667 141 0.2327 0.2368 REMARK 3 10 3.0718 - 2.9658 1.00 2673 141 0.2556 0.2805 REMARK 3 11 2.9658 - 2.8731 1.00 2683 140 0.2682 0.2848 REMARK 3 12 2.8731 - 2.7910 1.00 2656 140 0.2914 0.3449 REMARK 3 13 2.7910 - 2.7175 1.00 2697 140 0.2981 0.3489 REMARK 3 14 2.7175 - 2.6513 1.00 2665 140 0.2978 0.3060 REMARK 3 15 2.6513 - 2.5910 1.00 2654 140 0.3112 0.3323 REMARK 3 16 2.5910 - 2.5359 1.00 2632 138 0.3282 0.3781 REMARK 3 17 2.5359 - 2.4851 1.00 2709 143 0.3590 0.3638 REMARK 3 18 2.4851 - 2.4382 1.00 2645 139 0.3764 0.4037 REMARK 3 19 2.4382 - 2.3950 0.99 2657 139 0.4023 0.4271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.395 REMARK 200 RESOLUTION RANGE LOW (A) : 46.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.22 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM ACETATE PH 5.0, 50 MM REMARK 280 MAGNESIUM ACETATE AND 28-36 %(V/V) PEG200, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.85467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.42733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.42733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.85467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLN A 509 REMARK 465 ARG A 510 REMARK 465 ARG A 511 REMARK 465 LYS A 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 118 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 126 -59.99 -123.55 REMARK 500 THR A 144 -13.79 78.78 REMARK 500 PHE A 146 82.33 -157.55 REMARK 500 PRO A 147 42.01 -87.39 REMARK 500 LEU A 149 72.70 62.36 REMARK 500 ARG A 209 -9.45 -59.65 REMARK 500 GLN A 217 78.46 -112.68 REMARK 500 SER A 268 42.60 38.62 REMARK 500 ALA A 323 56.80 -159.51 REMARK 500 PHE A 341 -16.24 71.85 REMARK 500 ASP A 359 44.17 -141.75 REMARK 500 ASN A 378 -3.40 66.13 REMARK 500 ALA A 387 -117.10 44.53 REMARK 500 LEU A 507 51.11 -93.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG5 A 603 REMARK 610 PG5 A 604 REMARK 610 PG5 A 605 REMARK 610 PG5 A 606 REMARK 610 PG6 A 607 REMARK 610 LMT A 617 REMARK 610 LMT A 618 REMARK 610 LMT A 619 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6OU A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6OU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6OU A 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 623 DBREF 8AQ3 A 1 512 UNP P23930 LNT_ECOLI 1 512 SEQADV 8AQ3 MET A -19 UNP P23930 INITIATING METHIONINE SEQADV 8AQ3 GLY A -18 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 SER A -17 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 SER A -16 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 HIS A -15 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 HIS A -14 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 HIS A -13 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 HIS A -12 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 HIS A -11 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 HIS A -10 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 SER A -9 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 SER A -8 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 GLY A -7 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 LEU A -6 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 VAL A -5 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 PRO A -4 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 ARG A -3 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 GLY A -2 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 SER A -1 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 HIS A 0 UNP P23930 EXPRESSION TAG SEQADV 8AQ3 ALA A 387 UNP P23930 CYS 387 ENGINEERED MUTATION SEQRES 1 A 532 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 532 LEU VAL PRO ARG GLY SER HIS MET ALA PHE ALA SER LEU SEQRES 3 A 532 ILE GLU ARG GLN ARG ILE ARG LEU LEU LEU ALA LEU LEU SEQRES 4 A 532 PHE GLY ALA CYS GLY THR LEU ALA PHE SER PRO TYR ASP SEQRES 5 A 532 VAL TRP PRO ALA ALA ILE ILE SER LEU MET GLY LEU GLN SEQRES 6 A 532 ALA LEU THR PHE ASN ARG ARG PRO LEU GLN SER ALA ALA SEQRES 7 A 532 ILE GLY PHE CYS TRP GLY PHE GLY LEU PHE GLY SER GLY SEQRES 8 A 532 ILE ASN TRP VAL TYR VAL SER ILE ALA THR PHE GLY GLY SEQRES 9 A 532 MET PRO GLY PRO VAL ASN ILE PHE LEU VAL VAL LEU LEU SEQRES 10 A 532 ALA ALA TYR LEU SER LEU TYR THR GLY LEU PHE ALA GLY SEQRES 11 A 532 VAL LEU SER ARG LEU TRP PRO LYS THR THR TRP LEU ARG SEQRES 12 A 532 VAL ALA ILE ALA ALA PRO ALA LEU TRP GLN VAL THR GLU SEQRES 13 A 532 PHE LEU ARG GLY TRP VAL LEU THR GLY PHE PRO TRP LEU SEQRES 14 A 532 GLN PHE GLY TYR SER GLN ILE ASP GLY PRO LEU LYS GLY SEQRES 15 A 532 LEU ALA PRO ILE MET GLY VAL GLU ALA ILE ASN PHE LEU SEQRES 16 A 532 LEU MET MET VAL SER GLY LEU LEU ALA LEU ALA LEU VAL SEQRES 17 A 532 LYS ARG ASN TRP ARG PRO LEU VAL VAL ALA VAL VAL LEU SEQRES 18 A 532 PHE ALA LEU PRO PHE PRO LEU ARG TYR ILE GLN TRP PHE SEQRES 19 A 532 THR PRO GLN PRO GLU LYS THR ILE GLN VAL SER MET VAL SEQRES 20 A 532 GLN GLY ASP ILE PRO GLN SER LEU LYS TRP ASP GLU GLY SEQRES 21 A 532 GLN LEU LEU ASN THR LEU LYS ILE TYR TYR ASN ALA THR SEQRES 22 A 532 ALA PRO LEU MET GLY LYS SER SER LEU ILE ILE TRP PRO SEQRES 23 A 532 GLU SER ALA ILE THR ASP LEU GLU ILE ASN GLN GLN PRO SEQRES 24 A 532 PHE LEU LYS ALA LEU ASP GLY GLU LEU ARG ASP LYS GLY SEQRES 25 A 532 SER SER LEU VAL THR GLY ILE VAL ASP ALA ARG LEU ASN SEQRES 26 A 532 LYS GLN ASN ARG TYR ASP THR TYR ASN THR ILE ILE THR SEQRES 27 A 532 LEU GLY LYS GLY ALA PRO TYR SER TYR GLU SER ALA ASP SEQRES 28 A 532 ARG TYR ASN LYS ASN HIS LEU VAL PRO PHE GLY GLU PHE SEQRES 29 A 532 VAL PRO LEU GLU SER ILE LEU ARG PRO LEU ALA PRO PHE SEQRES 30 A 532 PHE ASP LEU PRO MET SER SER PHE SER ARG GLY PRO TYR SEQRES 31 A 532 ILE GLN PRO PRO LEU SER ALA ASN GLY ILE GLU LEU THR SEQRES 32 A 532 ALA ALA ILE ALA TYR GLU ILE ILE LEU GLY GLU GLN VAL SEQRES 33 A 532 ARG ASP ASN PHE ARG PRO ASP THR ASP TYR LEU LEU THR SEQRES 34 A 532 ILE SER ASN ASP ALA TRP PHE GLY LYS SER ILE GLY PRO SEQRES 35 A 532 TRP GLN HIS PHE GLN MET ALA ARG MET ARG ALA LEU GLU SEQRES 36 A 532 LEU ALA ARG PRO LEU LEU ARG SER THR ASN ASN GLY ILE SEQRES 37 A 532 THR ALA VAL ILE GLY PRO GLN GLY GLU ILE GLN ALA MET SEQRES 38 A 532 ILE PRO GLN PHE THR ARG GLU VAL LEU THR THR ASN VAL SEQRES 39 A 532 THR PRO THR THR GLY LEU THR PRO TYR ALA ARG THR GLY SEQRES 40 A 532 ASN TRP PRO LEU TRP VAL LEU THR ALA LEU PHE GLY PHE SEQRES 41 A 532 ALA ALA VAL LEU MET SER LEU ARG GLN ARG ARG LYS HET 6OU A 601 49 HET 6OU A 602 49 HET PG5 A 603 10 HET PG5 A 604 11 HET PG5 A 605 8 HET PG5 A 606 10 HET PG6 A 607 13 HET TRS A 608 8 HET ACT A 609 4 HET GOL A 610 6 HET GOL A 611 6 HET LMT A 612 35 HET LMT A 613 35 HET GOL A 614 6 HET GOL A 615 6 HET GOL A 616 6 HET LMT A 617 12 HET LMT A 618 12 HET LMT A 619 12 HET 6OU A 620 49 HET CL A 621 1 HET CL A 622 1 HET CL A 623 1 HETNAM 6OU [(2~{R})-1-[2-AZANYLETHOXY(OXIDANYL)PHOSPHORYL]OXY-3- HETNAM 2 6OU HEXADECANOYLOXY-PROPAN-2-YL] (~{Z})-OCTADEC-9-ENOATE HETNAM PG5 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM CL CHLORIDE ION HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 6OU 3(C39 H76 N O8 P) FORMUL 4 PG5 4(C8 H18 O4) FORMUL 8 PG6 C12 H26 O6 FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 10 ACT C2 H3 O2 1- FORMUL 11 GOL 5(C3 H8 O3) FORMUL 13 LMT 5(C24 H46 O11) FORMUL 22 CL 3(CL 1-) FORMUL 25 HOH *57(H2 O) HELIX 1 AA1 MET A 1 GLU A 8 1 8 HELIX 2 AA2 ARG A 9 THR A 25 1 17 HELIX 3 AA3 LEU A 26 PHE A 28 5 3 HELIX 4 AA4 TRP A 34 LEU A 47 1 14 HELIX 5 AA5 ARG A 52 ILE A 72 1 21 HELIX 6 AA6 TRP A 74 GLY A 84 1 11 HELIX 7 AA7 PRO A 86 TRP A 116 1 31 HELIX 8 AA8 THR A 120 ILE A 126 1 7 HELIX 9 AA9 ILE A 126 GLY A 140 1 15 HELIX 10 AB1 TRP A 141 GLY A 145 5 5 HELIX 11 AB2 GLN A 150 ILE A 156 5 7 HELIX 12 AB3 LEU A 160 GLY A 162 5 3 HELIX 13 AB4 LEU A 163 GLY A 168 1 6 HELIX 14 AB5 GLY A 168 LYS A 189 1 22 HELIX 15 AB6 ASN A 191 LEU A 204 1 14 HELIX 16 AB7 PHE A 206 ILE A 211 5 6 HELIX 17 AB8 PRO A 218 THR A 221 5 4 HELIX 18 AB9 PRO A 232 TRP A 237 1 6 HELIX 19 AC1 ASP A 238 GLY A 240 5 3 HELIX 20 AC2 GLN A 241 ALA A 254 1 14 HELIX 21 AC3 PRO A 255 MET A 257 5 3 HELIX 22 AC4 GLN A 277 GLY A 292 1 16 HELIX 23 AC5 LEU A 347 ARG A 352 1 6 HELIX 24 AC6 ALA A 355 LEU A 360 5 6 HELIX 25 AC7 TYR A 388 ILE A 391 5 4 HELIX 26 AC8 LEU A 392 PHE A 400 1 9 HELIX 27 AC9 ASP A 413 GLY A 417 5 5 HELIX 28 AD1 ILE A 420 ALA A 437 1 18 HELIX 29 AD2 THR A 481 GLY A 487 1 7 HELIX 30 AD3 ASN A 488 SER A 506 1 19 SHEET 1 AA1 2 THR A 215 PRO A 216 0 SHEET 2 AA1 2 THR A 477 THR A 478 -1 O THR A 478 N THR A 215 SHEET 1 AA2 6 ARG A 332 ASN A 334 0 SHEET 2 AA2 6 TYR A 310 GLY A 320 -1 N ILE A 316 O TYR A 333 SHEET 3 AA2 6 SER A 294 LEU A 304 -1 N ASP A 301 O TYR A 313 SHEET 4 AA2 6 LEU A 262 LEU A 273 1 N TRP A 265 O VAL A 296 SHEET 5 AA2 6 ILE A 222 GLN A 228 1 N VAL A 227 O ILE A 264 SHEET 6 AA2 6 GLU A 468 VAL A 474 -1 O GLU A 468 N GLN A 228 SHEET 1 AA3 6 LEU A 375 ALA A 377 0 SHEET 2 AA3 6 ILE A 380 ILE A 386 -1 O ILE A 380 N ALA A 377 SHEET 3 AA3 6 TYR A 406 SER A 411 1 O LEU A 408 N THR A 383 SHEET 4 AA3 6 LEU A 440 THR A 444 1 O LEU A 441 N THR A 409 SHEET 5 AA3 6 ALA A 450 ILE A 452 -1 O ALA A 450 N ARG A 442 SHEET 6 AA3 6 ILE A 458 MET A 461 -1 O ALA A 460 N VAL A 451 CISPEP 1 SER A 29 PRO A 30 0 8.84 SITE 1 AC1 23 TRP A 74 VAL A 75 SER A 78 ILE A 79 SITE 2 AC1 23 LEU A 143 PHE A 146 LYS A 236 TRP A 237 SITE 3 AC1 23 GLU A 267 SER A 268 LYS A 335 VAL A 339 SITE 4 AC1 23 PRO A 340 PHE A 341 GLY A 342 PRO A 361 SITE 5 AC1 23 MET A 362 ALA A 387 TYR A 388 SER A 411 SITE 6 AC1 23 ASN A 412 ASP A 413 TRP A 415 SITE 1 AC2 18 MET A 1 ALA A 2 ARG A 9 CYS A 23 SITE 2 AC2 18 THR A 25 SER A 29 PRO A 30 TYR A 31 SITE 3 AC2 18 ASP A 32 SER A 70 ASN A 73 LYS A 418 SITE 4 AC2 18 SER A 419 TRP A 423 ARG A 430 ILE A 458 SITE 5 AC2 18 HOH A 702 HOH A 738 SITE 1 AC3 1 ARG A 209 SITE 1 AC4 3 ARG A 485 GOL A 615 GOL A 616 SITE 1 AC5 2 GLY A 258 SER A 261 SITE 1 AC6 2 LEU A 347 GOL A 611 SITE 1 AC7 5 GLU A 8 ARG A 13 LEU A 47 ASN A 50 SITE 2 AC7 5 VAL A 188 SITE 1 AC8 2 TYR A 250 PHE A 280 SITE 1 AC9 1 ARG A 52 SITE 1 AD1 1 GLY A 87 SITE 1 AD2 5 THR A 144 PRO A 346 PG5 A 606 LMT A 613 SITE 2 AD2 5 HOH A 740 SITE 1 AD3 2 ARG A 397 TRP A 489 SITE 1 AD4 4 TRP A 141 LEU A 143 GOL A 611 HOH A 740 SITE 1 AD5 1 HOH A 746 SITE 1 AD6 2 ARG A 485 PG5 A 604 SITE 1 AD7 2 GLN A 212 PG5 A 604 SITE 1 AD8 1 PHE A 65 SITE 1 AD9 1 VAL A 33 SITE 1 AE1 8 VAL A 134 PHE A 137 GLU A 394 ASN A 488 SITE 2 AE1 8 TRP A 489 TRP A 492 ALA A 496 GLY A 499 SITE 1 AE2 2 ARG A 289 GLY A 322 SITE 1 AE3 2 TRP A 121 ARG A 193 SITE 1 AE4 2 ARG A 9 ARG A 11 CRYST1 160.994 160.994 91.282 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006211 0.003586 0.000000 0.00000 SCALE2 0.000000 0.007172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010955 0.00000