HEADER HYDROLASE 11-AUG-22 8AQ7 TITLE KRAS G12C IN COMPLEX WITH GDP AND COMPOUND 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS K-RAS G12C, GTPASE, GDP BOUND, CYSTEINE MUTATION, COVALENT BINDING, KEYWDS 2 SIGNALING PROTEIN, SMALL G-PROTEIN, SWITCH2 POCKET, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.OSTERMANN REVDAT 3 31-JAN-24 8AQ7 1 REMARK REVDAT 2 04-JAN-23 8AQ7 1 JRNL REVDAT 1 07-DEC-22 8AQ7 0 JRNL AUTH E.LORTHIOIS,M.GERSPACHER,K.S.BEYER,A.VAUPEL,C.LEBLANC, JRNL AUTH 2 R.STRINGER,A.WEISS,R.WILCKEN,D.A.GUTHY,A.LINGEL, JRNL AUTH 3 C.BOMIO-CONFAGLIA,R.MACHAUER,P.RIGOLLIER,J.OTTL,D.ARZ, JRNL AUTH 4 P.BERNET,G.DESJONQUERES,S.DUSSAUGE,M.KAZIC-LEGUEUX, JRNL AUTH 5 M.A.LOZAC'H,C.MURA,M.SORGE,M.TODOROV,N.WARIN,F.ZINK, JRNL AUTH 6 H.VOSHOL,F.J.ZECRI,R.C.SEDRANI,N.OSTERMANN,S.M.BRACHMANN, JRNL AUTH 7 S.COTESTA JRNL TITL JDQ443, A STRUCTURALLY NOVEL, PYRAZOLE-BASED, COVALENT JRNL TITL 2 INHIBITOR OF KRAS G12C FOR THE TREATMENT OF SOLID TUMORS. JRNL REF J.MED.CHEM. V. 65 16173 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36399068 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01438 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (3-FEB-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 44949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2143 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.61 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2386 REMARK 3 BIN FREE R VALUE : 0.2412 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.52790 REMARK 3 B22 (A**2) : -0.30760 REMARK 3 B33 (A**2) : -2.22030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.116 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.115 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.108 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.110 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2853 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3886 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1021 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 486 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2853 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 368 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2793 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.94 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.39 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -18.8796 4.5055 -11.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.03 T22: -0.0508 REMARK 3 T33: -0.0248 T12: 0.0056 REMARK 3 T13: -0.0479 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.2345 L22: 3.2698 REMARK 3 L33: 2.2928 L12: -1.1299 REMARK 3 L13: 0.8061 L23: -1.6221 REMARK 3 S TENSOR REMARK 3 S11: -0.2077 S12: 0.3728 S13: -0.3473 REMARK 3 S21: 0.3728 S22: -0.0276 S23: -0.1047 REMARK 3 S31: -0.3473 S32: -0.1047 S33: 0.2353 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.9786 -26.1789 -22.3545 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: -0.0174 REMARK 3 T33: -0.0603 T12: 0.0255 REMARK 3 T13: -0.0057 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.6917 L22: 1.2255 REMARK 3 L33: 3.07 L12: 0.0344 REMARK 3 L13: 0.3909 L23: 0.2903 REMARK 3 S TENSOR REMARK 3 S11: 0.05 S12: -0.0573 S13: 0.3706 REMARK 3 S21: -0.0573 S22: -0.018 S23: 0.1439 REMARK 3 S31: 0.3706 S32: 0.1439 S33: -0.0319 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -5.9414 -10.975 -11.8313 REMARK 3 T TENSOR REMARK 3 T11: -0.0204 T22: 0.0011 REMARK 3 T33: 0.0031 T12: -0.0389 REMARK 3 T13: -0.0159 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.0853 L22: 1.4247 REMARK 3 L33: 0.8379 L12: -1.1497 REMARK 3 L13: 0.8646 L23: 0.3593 REMARK 3 S TENSOR REMARK 3 S11: -0.1698 S12: 0.2388 S13: 0.0691 REMARK 3 S21: 0.2388 S22: 0.0567 S23: 0.1717 REMARK 3 S31: 0.0691 S32: 0.1717 S33: 0.113 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45907 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 66.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.490 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.65 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7R0M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 4000, 0.1 M TRIS PH 8.5, 0.2 REMARK 280 M MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.70400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.31050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.39550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.31050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.70400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.39550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 169 REMARK 465 GLY B 0 REMARK 465 PHE B 28 REMARK 465 VAL B 29 REMARK 465 ASP B 30 REMARK 465 GLU B 31 REMARK 465 TYR B 32 REMARK 465 ASP B 33 REMARK 465 PRO B 34 REMARK 465 THR B 35 REMARK 465 ILE B 36 REMARK 465 GLU B 168 REMARK 465 LYS B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 -151.41 -158.68 REMARK 500 LYS A 117 32.89 75.61 REMARK 500 SER A 122 30.64 -78.22 REMARK 500 ALA B 59 -152.72 -143.84 REMARK 500 LYS B 117 36.50 70.69 REMARK 500 LYS B 117 35.81 70.69 REMARK 500 ARG B 149 -0.07 80.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1268 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1248 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A1004 O2B 92.1 REMARK 620 3 HOH A1128 O 83.6 99.1 REMARK 620 4 HOH A1144 O 95.2 87.2 173.7 REMARK 620 5 HOH A1155 O 172.4 95.0 92.6 87.8 REMARK 620 6 HOH A1160 O 86.7 173.4 87.3 86.5 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1110 O REMARK 620 2 HOH A1117 O 172.5 REMARK 620 3 HOH A1129 O 85.7 86.9 REMARK 620 4 HOH A1147 O 88.2 92.6 87.0 REMARK 620 5 HOH A1264 O 89.2 89.6 89.5 175.7 REMARK 620 6 HOH A1267 O 93.4 93.9 178.9 92.3 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B1003 O1B 88.9 REMARK 620 3 HOH B1112 O 89.2 92.9 REMARK 620 4 HOH B1117 O 91.5 86.9 179.3 REMARK 620 5 HOH B1133 O 176.6 93.3 93.2 86.1 REMARK 620 6 HOH B1173 O 88.5 174.8 91.7 88.6 89.0 REMARK 620 N 1 2 3 4 5 DBREF 8AQ7 A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 8AQ7 B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 8AQ7 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 8AQ7 CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8AQ7 SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 8AQ7 LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 8AQ7 SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 8AQ7 GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 8AQ7 CYS B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 8AQ7 SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 8AQ7 LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 8AQ7 SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS HET MG A1001 1 HET MG A1002 1 HET NZX A1003 33 HET GDP A1004 28 HET MG B1001 1 HET NZX B1002 33 HET GDP B1003 28 HETNAM MG MAGNESIUM ION HETNAM NZX 1-[6-[3-CYCLOHEXYL-5-METHYL-4-(5-METHYL-1~{H}-INDAZOL- HETNAM 2 NZX 4-YL)PYRAZOL-1-YL]-2-AZASPIRO[3.3]HEPTAN-2-YL]PROPAN- HETNAM 3 NZX 1-ONE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN NZX 1-[6-[3-CYCLOHEXYL-5-METHYL-4-(5-METHYL-1H-INDAZOL-4- HETSYN 2 NZX YL)PYRAZOL-1-YL]-2-AZASPIRO[3.3]HEPTAN-2-YL]PROP-2-EN- HETSYN 3 NZX 1-ONE (PRECURSOR) FORMUL 3 MG 3(MG 2+) FORMUL 5 NZX 2(C27 H35 N5 O) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 10 HOH *316(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 SER B 65 GLY B 75 1 11 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O SER A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 SER B 39 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 THR B 2 GLY B 10 1 N LEU B 6 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 112 N LEU B 80 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK SG CYS A 12 C28 NZX A1003 1555 1555 1.79 LINK SG CYS B 12 C28 NZX B1002 1555 1555 1.79 LINK OG SER A 17 MG MG A1001 1555 1555 2.04 LINK MG MG A1001 O2B GDP A1004 1555 1555 1.96 LINK MG MG A1001 O HOH A1128 1555 1555 2.11 LINK MG MG A1001 O HOH A1144 1555 1555 2.13 LINK MG MG A1001 O HOH A1155 1555 1555 2.08 LINK MG MG A1001 O HOH A1160 1555 1555 2.22 LINK MG MG A1002 O HOH A1110 1555 1555 2.08 LINK MG MG A1002 O HOH A1117 1555 1555 2.13 LINK MG MG A1002 O HOH A1129 1555 1555 2.22 LINK MG MG A1002 O HOH A1147 1555 1555 2.12 LINK MG MG A1002 O HOH A1264 1555 1555 2.09 LINK MG MG A1002 O HOH A1267 1555 1555 2.13 LINK OG SER B 17 MG MG B1001 1555 1555 2.10 LINK MG MG B1001 O1B GDP B1003 1555 1555 2.09 LINK MG MG B1001 O HOH B1112 1555 1555 2.12 LINK MG MG B1001 O HOH B1117 1555 1555 2.18 LINK MG MG B1001 O HOH B1133 1555 1555 2.17 LINK MG MG B1001 O HOH B1173 1555 1555 2.09 CRYST1 43.408 64.791 132.621 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007540 0.00000