HEADER TRANSCRIPTION 12-AUG-22 8AQM TITLE CRYSTAL STRUCTURE OF PPARG AND NCOR2 WITH AN INVERSE AGONIST (COMPOUND TITLE 2 6A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEAR RECEPTOR COREPRESSOR 2; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: N-COR2,CTG REPEAT PROTEIN 26,SMAP270,SILENCING MEDIATOR OF COMPND 10 RETINOIC ACID AND THYROID HORMONE RECEPTOR,SMRT,T3 RECEPTOR- COMPND 11 ASSOCIATING FACTOR,TRAC,THYROID-,RETINOIC-ACID-RECEPTOR-ASSOCIATED COMPND 12 COREPRESSOR; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR HORMONE RECEPTOR TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.FRIBERG,D.L.ORSI,E.POOK,N.BRAEUER,C.T.LEMKE,T.STELLFELD,V.PUETTER, AUTHOR 2 J.GOLDSTEIN REVDAT 5 23-OCT-24 8AQM 1 REMARK REVDAT 4 01-MAY-24 8AQM 1 REMARK REVDAT 3 28-DEC-22 8AQM 1 TITLE REVDAT 2 23-NOV-22 8AQM 1 JRNL REVDAT 1 09-NOV-22 8AQM 0 JRNL AUTH D.L.ORSI,E.POOK,N.BRAUER,A.FRIBERG,P.LIENAU,C.T.LEMKE, JRNL AUTH 2 T.STELLFELD,U.BRUGGEMEIER,V.PUTTER,H.MEYER,M.BACO,S.TANG, JRNL AUTH 3 A.D.CHERNIACK,L.WESTLAKE,S.A.BENDER,M.KOCAK,C.A.STRATHDEE, JRNL AUTH 4 M.MEYERSON,K.EIS,J.T.GOLDSTEIN JRNL TITL DISCOVERY AND STRUCTURE-BASED DESIGN OF POTENT COVALENT PPAR JRNL TITL 2 GAMMA INVERSE-AGONISTS BAY-4931 AND BAY-0069 . JRNL REF J.MED.CHEM. V. 65 14843 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36270630 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01379 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1508 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1967 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.4470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4273 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.033 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4404 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4221 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5924 ; 1.394 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9859 ; 0.935 ; 1.643 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;36.327 ;23.865 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;18.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.958 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4755 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 775 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8AQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9799 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07330 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.70300 REMARK 200 FOR SHELL : 2.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INTERNAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6, 0.2M NH4CL, 20% REMARK 280 PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 HIS A 201 REMARK 465 ASP A 260 REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 LYS A 458 REMARK 465 THR A 459 REMARK 465 GLU A 460 REMARK 465 THR A 461 REMARK 465 ASP A 462 REMARK 465 GLY B 199 REMARK 465 SER B 200 REMARK 465 HIS B 201 REMARK 465 MET B 202 REMARK 465 GLN B 203 REMARK 465 LEU B 204 REMARK 465 HIS B 266 REMARK 465 ILE B 267 REMARK 465 THR B 268 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 LYS B 275 REMARK 465 GLU B 276 REMARK 465 VAL B 277 REMARK 465 ALA B 278 REMARK 465 THR B 459 REMARK 465 GLU B 460 REMARK 465 THR B 461 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 HIS C 2343 REMARK 465 ALA C 2344 REMARK 465 SER C 2345 REMARK 465 THR C 2346 REMARK 465 GLY C 2360 REMARK 465 LYS C 2361 REMARK 465 TYR C 2362 REMARK 465 ASP C 2363 REMARK 465 GLN C 2364 REMARK 465 TRP C 2365 REMARK 465 HIS D 2343 REMARK 465 ALA D 2344 REMARK 465 SER D 2345 REMARK 465 THR D 2346 REMARK 465 ASN D 2347 REMARK 465 MET D 2348 REMARK 465 LYS D 2361 REMARK 465 TYR D 2362 REMARK 465 ASP D 2363 REMARK 465 GLN D 2364 REMARK 465 TRP D 2365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 335 -169.18 -127.06 REMARK 500 SER A 342 55.25 39.23 REMARK 500 GLU A 343 75.57 36.09 REMARK 500 LEU A 393 58.86 -97.18 REMARK 500 LEU A 476 -160.73 -108.15 REMARK 500 ASP B 251 -178.48 -175.79 REMARK 500 LEU B 476 -163.00 -109.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 212 0.07 SIDE CHAIN REMARK 500 ARG B 212 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1178 DISTANCE = 6.21 ANGSTROMS DBREF 8AQM A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 8AQM B 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 8AQM C 2343 2365 UNP Q9Y618 NCOR2_HUMAN 2332 2354 DBREF 8AQM D 2343 2365 UNP Q9Y618 NCOR2_HUMAN 2332 2354 SEQADV 8AQM GLY A 199 UNP P37231 EXPRESSION TAG SEQADV 8AQM SER A 200 UNP P37231 EXPRESSION TAG SEQADV 8AQM HIS A 201 UNP P37231 EXPRESSION TAG SEQADV 8AQM MET A 202 UNP P37231 EXPRESSION TAG SEQADV 8AQM GLY B 199 UNP P37231 EXPRESSION TAG SEQADV 8AQM SER B 200 UNP P37231 EXPRESSION TAG SEQADV 8AQM HIS B 201 UNP P37231 EXPRESSION TAG SEQADV 8AQM MET B 202 UNP P37231 EXPRESSION TAG SEQRES 1 A 279 GLY SER HIS MET GLN LEU ASN PRO GLU SER ALA ASP LEU SEQRES 2 A 279 ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SEQRES 3 A 279 SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU SEQRES 4 A 279 THR GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR SEQRES 5 A 279 ASP MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS SEQRES 6 A 279 PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU SEQRES 7 A 279 VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER SEQRES 8 A 279 VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER SEQRES 9 A 279 ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL SEQRES 10 A 279 THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR SEQRES 11 A 279 MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SEQRES 12 A 279 SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SEQRES 13 A 279 SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS SEQRES 14 A 279 PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP SEQRES 15 A 279 ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SEQRES 16 A 279 SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE SEQRES 17 A 279 GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU SEQRES 18 A 279 GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE SEQRES 19 A 279 ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE SEQRES 20 A 279 VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS SEQRES 21 A 279 THR GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU SEQRES 22 A 279 ILE TYR LYS ASP LEU TYR SEQRES 1 B 279 GLY SER HIS MET GLN LEU ASN PRO GLU SER ALA ASP LEU SEQRES 2 B 279 ARG ALA LEU ALA LYS HIS LEU TYR ASP SER TYR ILE LYS SEQRES 3 B 279 SER PHE PRO LEU THR LYS ALA LYS ALA ARG ALA ILE LEU SEQRES 4 B 279 THR GLY LYS THR THR ASP LYS SER PRO PHE VAL ILE TYR SEQRES 5 B 279 ASP MET ASN SER LEU MET MET GLY GLU ASP LYS ILE LYS SEQRES 6 B 279 PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SER LYS GLU SEQRES 7 B 279 VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN PHE ARG SER SEQRES 8 B 279 VAL GLU ALA VAL GLN GLU ILE THR GLU TYR ALA LYS SER SEQRES 9 B 279 ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN ASP GLN VAL SEQRES 10 B 279 THR LEU LEU LYS TYR GLY VAL HIS GLU ILE ILE TYR THR SEQRES 11 B 279 MET LEU ALA SER LEU MET ASN LYS ASP GLY VAL LEU ILE SEQRES 12 B 279 SER GLU GLY GLN GLY PHE MET THR ARG GLU PHE LEU LYS SEQRES 13 B 279 SER LEU ARG LYS PRO PHE GLY ASP PHE MET GLU PRO LYS SEQRES 14 B 279 PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU GLU LEU ASP SEQRES 15 B 279 ASP SER ASP LEU ALA ILE PHE ILE ALA VAL ILE ILE LEU SEQRES 16 B 279 SER GLY ASP ARG PRO GLY LEU LEU ASN VAL LYS PRO ILE SEQRES 17 B 279 GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA LEU GLU LEU SEQRES 18 B 279 GLN LEU LYS LEU ASN HIS PRO GLU SER SER GLN LEU PHE SEQRES 19 B 279 ALA LYS LEU LEU GLN LYS MET THR ASP LEU ARG GLN ILE SEQRES 20 B 279 VAL THR GLU HIS VAL GLN LEU LEU GLN VAL ILE LYS LYS SEQRES 21 B 279 THR GLU THR ASP MET SER LEU HIS PRO LEU LEU GLN GLU SEQRES 22 B 279 ILE TYR LYS ASP LEU TYR SEQRES 1 C 23 HIS ALA SER THR ASN MET GLY LEU GLU ALA ILE ILE ARG SEQRES 2 C 23 LYS ALA LEU MET GLY LYS TYR ASP GLN TRP SEQRES 1 D 23 HIS ALA SER THR ASN MET GLY LEU GLU ALA ILE ILE ARG SEQRES 2 D 23 LYS ALA LEU MET GLY LYS TYR ASP GLN TRP HET O2O A1001 28 HET O2O B1001 28 HETNAM O2O 2-CHLORANYL-~{N}-[2-(3-METHYLPHENYL)-1,3-BENZOXAZOL-5- HETNAM 2 O2O YL]-5-NITRO-BENZAMIDE FORMUL 5 O2O 2(C21 H14 CL N3 O4) FORMUL 7 HOH *192(H2 O) HELIX 1 AA1 ASN A 205 PHE A 226 1 22 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 VAL A 277 SER A 289 1 13 HELIX 5 AA5 SER A 289 SER A 302 1 14 HELIX 6 AA6 GLY A 305 LEU A 309 5 5 HELIX 7 AA7 ASP A 310 LEU A 333 1 24 HELIX 8 AA8 ARG A 350 LEU A 356 1 7 HELIX 9 AA9 PRO A 359 PHE A 363 5 5 HELIX 10 AB1 MET A 364 ALA A 376 1 13 HELIX 11 AB2 ASP A 380 LEU A 393 1 14 HELIX 12 AB3 ASN A 402 HIS A 425 1 24 HELIX 13 AB4 GLN A 430 LYS A 457 1 28 HELIX 14 AB5 HIS A 466 LYS A 474 1 9 HELIX 15 AB6 GLU B 207 PHE B 226 1 20 HELIX 16 AB7 THR B 229 THR B 238 1 10 HELIX 17 AB8 ASP B 251 GLU B 259 1 9 HELIX 18 AB9 ASP B 260 ILE B 262 5 3 HELIX 19 AC1 PHE B 282 SER B 302 1 21 HELIX 20 AC2 ASP B 310 LEU B 333 1 24 HELIX 21 AC3 SER B 342 GLY B 344 5 3 HELIX 22 AC4 ARG B 350 SER B 355 1 6 HELIX 23 AC5 PRO B 359 PHE B 363 5 5 HELIX 24 AC6 MET B 364 ALA B 376 1 13 HELIX 25 AC7 ASP B 380 LEU B 393 1 14 HELIX 26 AC8 ASN B 402 HIS B 425 1 24 HELIX 27 AC9 GLN B 430 GLN B 451 1 22 HELIX 28 AD1 LEU B 452 LYS B 458 1 7 HELIX 29 AD2 HIS B 466 TYR B 473 1 8 HELIX 30 AD3 MET C 2348 MET C 2359 1 12 HELIX 31 AD4 LEU D 2350 MET D 2359 1 10 SHEET 1 AA1 3 PHE A 247 ILE A 249 0 SHEET 2 AA1 3 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 3 GLY A 338 ILE A 341 -1 N ILE A 341 O GLY A 346 SHEET 1 AA2 4 PHE B 247 ILE B 249 0 SHEET 2 AA2 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 AA2 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 AA2 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 LINK SG CYS A 285 C5 O2O A1001 1555 1555 1.65 LINK SG CYS B 285 C5 O2O B1001 1555 1555 1.65 CISPEP 1 LYS A 358 PRO A 359 0 -6.73 CISPEP 2 LYS B 358 PRO B 359 0 -4.42 CRYST1 61.060 94.530 114.840 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008708 0.00000