HEADER MEMBRANE PROTEIN 15-AUG-22 8AR1 TITLE SOLUTION STRUCTURE OF TLR3 TRANSMEMBRANE AND CYTOPLASMIC JUXTAMEMBRANE TITLE 2 REGIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TLR3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.D.KORNILOV,A.V.SHABALKINA,M.V.GONCHARUK,S.A.GONCHARUK,A.S.ARSENIEV, AUTHOR 2 K.S.MINEEV REVDAT 2 29-MAR-23 8AR1 1 JRNL REVDAT 1 22-MAR-23 8AR1 0 JRNL AUTH F.D.KORNILOV,A.V.SHABALKINA,C.LIN,P.E.VOLYNSKY,E.F.KOT, JRNL AUTH 2 A.L.KAYUSHIN,V.A.LUSHPA,M.V.GONCHARUK,A.S.ARSENIEV, JRNL AUTH 3 S.A.GONCHARUK,X.WANG,K.S.MINEEV JRNL TITL THE ARCHITECTURE OF TRANSMEMBRANE AND CYTOPLASMIC JRNL TITL 2 JUXTAMEMBRANE REGIONS OF TOLL-LIKE RECEPTORS. JRNL REF NAT COMMUN V. 14 1503 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36932058 JRNL DOI 10.1038/S41467-023-37042-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292124428. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318; 318 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 50; 90 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 270 UM [U-13C; U-15N] PROTEIN, REMARK 210 128 MM [U-2H] DPC, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 4 MM TCEP, REMARK 210 0.05 % W/V SODIUM AZIDE, 1 MM REMARK 210 TSP, 95% H2O/5% D2O; 220 UM [U- REMARK 210 15N] PROTEIN, 142 MM DPC, 40 MM REMARK 210 POTASSIUM PHOSPHATE, 4 MM TCEP, REMARK 210 0.05 % W/V SODIUM AZIDE, 1 MM REMARK 210 TSP, 37 MG/ML DGPG, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC CONSTANT TIME; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D HNCO; 3D REMARK 210 HN(CO)CA; 3D HNCA; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D HCCH-COSY REMARK 210 AROMATIC; 2D CBHD AROMATIC; 2D REMARK 210 1H-15N IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, CARA 1.9.7.1, REMARK 210 MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 700 73.76 55.18 REMARK 500 1 MET A 707 -71.93 -72.67 REMARK 500 2 SER A 699 37.86 -95.08 REMARK 500 2 ALA A 700 67.72 -178.88 REMARK 500 2 MET A 707 -72.89 -73.28 REMARK 500 2 LEU A 742 -79.38 -71.34 REMARK 500 3 ALA A 700 75.05 -113.18 REMARK 500 3 MET A 707 -74.66 -72.69 REMARK 500 3 SER A 737 65.76 -119.18 REMARK 500 4 SER A 699 -74.63 -85.88 REMARK 500 4 ALA A 700 67.79 -178.81 REMARK 500 4 MET A 707 -71.09 -71.25 REMARK 500 4 PHE A 744 -77.43 -82.68 REMARK 500 4 LYS A 745 -174.87 -179.37 REMARK 500 5 ALA A 700 67.90 -178.78 REMARK 500 5 SER A 737 -168.84 -174.61 REMARK 500 6 SER A 699 36.85 -94.56 REMARK 500 6 ALA A 700 79.31 51.39 REMARK 500 6 MET A 707 -73.53 -72.78 REMARK 500 6 SER A 737 81.18 63.44 REMARK 500 7 MET A 707 -72.09 -68.86 REMARK 500 7 PHE A 744 101.79 -163.75 REMARK 500 8 ASP A 698 -61.07 -91.96 REMARK 500 8 ALA A 700 74.11 49.98 REMARK 500 8 MET A 707 -73.45 -72.18 REMARK 500 8 SER A 737 115.38 -161.93 REMARK 500 8 PHE A 744 88.87 49.01 REMARK 500 9 ALA A 700 71.82 61.64 REMARK 500 9 MET A 707 -73.34 -73.36 REMARK 500 9 PHE A 744 -77.07 -51.08 REMARK 500 10 ALA A 700 76.16 -112.61 REMARK 500 10 MET A 707 -72.16 -71.41 REMARK 500 10 SER A 737 40.24 -100.49 REMARK 500 10 PHE A 744 82.22 43.00 REMARK 500 10 LYS A 745 -70.80 -89.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34751 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF TLR3 TRANSMEMBRANE AND CYTOPLASMIC REMARK 900 JUXTAMEMBRANE REGIONS DBREF 8AR1 A 698 746 UNP O15455 TLR3_HUMAN 698 746 SEQADV 8AR1 MET A 697 UNP O15455 INITIATING METHIONINE SEQRES 1 A 50 MET ASP SER ALA PRO PHE GLU LEU PHE PHE MET ILE ASN SEQRES 2 A 50 THR SER ILE LEU LEU ILE PHE ILE PHE ILE VAL LEU LEU SEQRES 3 A 50 ILE HIS PHE GLU GLY TRP ARG ILE SER PHE TYR TRP ASN SEQRES 4 A 50 VAL SER VAL HIS ARG VAL LEU GLY PHE LYS GLU HELIX 1 AA1 ALA A 700 PHE A 706 1 7 HELIX 2 AA2 ASN A 709 TYR A 733 1 25 HELIX 3 AA3 SER A 737 GLU A 746 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1