HEADER TRANSCRIPTION 24-AUG-22 8ATV TITLE CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION TITLE 2 INITIATION COMPLEX WITH 5-MER RNA, PPPGPGPAPAPA (IC5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: MITOCHONDRIAL TRANSCRIPTION FACTOR MTTFB,MITOCHONDRIAL- COMPND 5 SPECIFICITY FACTOR,RF1023; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL; COMPND 10 CHAIN: A; COMPND 11 EC: 2.7.7.6; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: RESIDUES 101-1351; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (36-MER); COMPND 16 CHAIN: N; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (36-MER); COMPND 20 CHAIN: T; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: RNA (PPPGPGPAPAPA); COMPND 24 CHAIN: C; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 ATCC: 204508; SOURCE 6 GENE: MTF1, YMR228W, YM9959.10; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRCHISC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 STRAIN: ATCC 204508 / S288C; SOURCE 15 ATCC: 204508; SOURCE 16 GENE: RPO41, YFL036W; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PROEXHTB; SOURCE 22 MOL_ID: 3; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 25 ORGANISM_TAXID: 559292; SOURCE 26 MOL_ID: 4; SOURCE 27 SYNTHETIC: YES; SOURCE 28 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 29 ORGANISM_TAXID: 559292; SOURCE 30 MOL_ID: 5; SOURCE 31 SYNTHETIC: YES; SOURCE 32 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 33 ORGANISM_TAXID: 559292 KEYWDS GENE TRANSCRIPTION, POLYMERASE, RDRP, MTF1, RPO41, POLRMT, MTRNAP, KEYWDS 2 DNA, TRANSCRIPTION INITIATION, RNA POLYMERASE, MITOCHONDRIA, KEYWDS 3 TRANSCRIPTION EXPDTA ELECTRON MICROSCOPY AUTHOR Q.GOOVAERTS,J.SHEN,S.S.PATEL,K.DAS REVDAT 4 01-NOV-23 8ATV 1 JRNL REVDAT 3 25-OCT-23 8ATV 1 JRNL REVDAT 2 11-OCT-23 8ATV 1 JRNL REMARK REVDAT 1 30-AUG-23 8ATV 0 JRNL AUTH Q.GOOVAERTS,J.SHEN,B.DE WIJNGAERT,U.BASU,S.S.PATEL,K.DAS JRNL TITL STRUCTURES ILLUSTRATE STEP-BY-STEP MITOCHONDRIAL JRNL TITL 2 TRANSCRIPTION INITIATION. JRNL REF NATURE V. 622 872 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 37821701 JRNL DOI 10.1038/S41586-023-06643-Y REMARK 2 REMARK 2 RESOLUTION. 3.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, COOT, RELION, REMARK 3 RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6YMV REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 140.000 REMARK 3 REMARK 3 FITTING PROCEDURE : REALSPACE REFINEMENT REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.390 REMARK 3 NUMBER OF PARTICLES : 91298 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ATV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292124908. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : YEAST MITOCHONDRIAL RNA REMARK 245 POLYMERASE TRANSCRIPTION REMARK 245 INITIATION COMPLEX WITH 5-MER REMARK 245 RNA, PPPGPGPAPAPA (IC5); DNA- REMARK 245 DIRECTED RNA POLYMERASE, REMARK 245 MITOCHONDRIAL; DNA (36-MER); REMARK 245 MITOCHONDRIAL TRANSCRIPTION REMARK 245 FACTOR 1; RNA (PPPGPGPAPAPA) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.90 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 3 UL SAMPLE, BACK BLOTTING FOR REMARK 245 12 SECONDS REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : 15S MITOCHONDRIA REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 602 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 150000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, N, T, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 GLN B 336 REMARK 465 THR B 337 REMARK 465 GLU B 338 REMARK 465 HIS B 339 REMARK 465 SER B 340 REMARK 465 GLY B 341 REMARK 465 GLY A 90 REMARK 465 ALA A 91 REMARK 465 MET A 92 REMARK 465 GLY A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 ILE A 96 REMARK 465 GLN A 97 REMARK 465 ARG A 98 REMARK 465 PRO A 99 REMARK 465 SER A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 THR A 103 REMARK 465 SER A 104 REMARK 465 MET A 105 REMARK 465 THR A 106 REMARK 465 ARG A 107 REMARK 465 THR A 108 REMARK 465 ARG A 109 REMARK 465 ASP A 110 REMARK 465 VAL A 111 REMARK 465 MET A 112 REMARK 465 GLN A 113 REMARK 465 LEU A 114 REMARK 465 TRP A 115 REMARK 465 SER A 116 REMARK 465 LEU A 117 REMARK 465 LEU A 118 REMARK 465 GLU A 119 REMARK 465 ALA A 120 REMARK 465 CYS A 121 REMARK 465 LEU A 122 REMARK 465 GLN A 123 REMARK 465 SER A 124 REMARK 465 ASN A 125 REMARK 465 LEU A 126 REMARK 465 MET A 127 REMARK 465 LYS A 128 REMARK 465 ARG A 129 REMARK 465 ALA A 130 REMARK 465 PHE A 131 REMARK 465 SER A 132 REMARK 465 ILE A 133 REMARK 465 LEU A 134 REMARK 465 GLU A 135 REMARK 465 SER A 136 REMARK 465 LEU A 137 REMARK 465 TYR A 138 REMARK 465 LEU A 139 REMARK 465 VAL A 140 REMARK 465 PRO A 141 REMARK 465 GLU A 142 REMARK 465 HIS A 143 REMARK 465 LYS A 144 REMARK 465 GLN A 145 REMARK 465 ARG A 146 REMARK 465 PHE A 147 REMARK 465 ILE A 148 REMARK 465 GLU A 149 REMARK 465 ASP A 150 REMARK 465 TYR A 151 REMARK 465 ASN A 152 REMARK 465 MET A 153 REMARK 465 TYR A 154 REMARK 465 LEU A 155 REMARK 465 ASN A 156 REMARK 465 SER A 157 REMARK 465 PHE A 158 REMARK 465 SER A 159 REMARK 465 LYS A 160 REMARK 465 ASN A 161 REMARK 465 ASP A 162 REMARK 465 PRO A 163 REMARK 465 ASN A 164 REMARK 465 PHE A 165 REMARK 465 PRO A 166 REMARK 465 ILE A 167 REMARK 465 LEU A 168 REMARK 465 LYS A 169 REMARK 465 MET A 170 REMARK 465 ASN A 171 REMARK 465 GLU A 172 REMARK 465 LYS A 173 REMARK 465 LEU A 174 REMARK 465 THR A 175 REMARK 465 ASN A 176 REMARK 465 ASP A 177 REMARK 465 LEU A 178 REMARK 465 GLU A 179 REMARK 465 THR A 180 REMARK 465 SER A 181 REMARK 465 PHE A 182 REMARK 465 LYS A 183 REMARK 465 ASP A 184 REMARK 465 VAL A 185 REMARK 465 ASN A 186 REMARK 465 TYR A 187 REMARK 465 ASN A 188 REMARK 465 ASP A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 LEU A 192 REMARK 465 ALA A 193 REMARK 465 ILE A 194 REMARK 465 MET A 195 REMARK 465 ILE A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 ALA A 199 REMARK 465 LEU A 200 REMARK 465 ASN A 201 REMARK 465 PHE A 202 REMARK 465 HIS A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 THR A 206 REMARK 465 SER A 207 REMARK 465 SER A 208 REMARK 465 MET A 209 REMARK 465 LEU A 210 REMARK 465 LEU A 211 REMARK 465 LYS A 212 REMARK 465 PRO A 213 REMARK 465 ILE A 214 REMARK 465 ILE A 215 REMARK 465 SER A 216 REMARK 465 ALA A 217 REMARK 465 TYR A 218 REMARK 465 LEU A 219 REMARK 465 LYS A 220 REMARK 465 MET A 221 REMARK 465 SER A 222 REMARK 465 VAL A 223 REMARK 465 ASN A 224 REMARK 465 GLY A 225 REMARK 465 ILE A 226 REMARK 465 ARG A 227 REMARK 465 GLU A 228 REMARK 465 ILE A 229 REMARK 465 PHE A 230 REMARK 465 SER A 231 REMARK 465 CYS A 232 REMARK 465 LEU A 233 REMARK 465 ASP A 234 REMARK 465 ILE A 235 REMARK 465 LEU A 236 REMARK 465 THR A 237 REMARK 465 ILE A 238 REMARK 465 SER A 239 REMARK 465 ASP A 240 REMARK 465 LEU A 241 REMARK 465 ASN A 242 REMARK 465 ILE A 243 REMARK 465 LEU A 244 REMARK 465 MET A 245 REMARK 465 ASN A 246 REMARK 465 ASP A 247 REMARK 465 LEU A 248 REMARK 465 LYS A 249 REMARK 465 VAL A 250 REMARK 465 ILE A 251 REMARK 465 THR A 252 REMARK 465 PRO A 253 REMARK 465 SER A 254 REMARK 465 GLN A 255 REMARK 465 LEU A 256 REMARK 465 PRO A 257 REMARK 465 ASN A 258 REMARK 465 SER A 259 REMARK 465 VAL A 260 REMARK 465 ARG A 261 REMARK 465 PRO A 262 REMARK 465 ILE A 263 REMARK 465 LEU A 264 REMARK 465 GLU A 265 REMARK 465 SER A 266 REMARK 465 LEU A 267 REMARK 465 THR A 268 REMARK 465 LEU A 269 REMARK 465 SER A 270 REMARK 465 PRO A 271 REMARK 465 THR A 272 REMARK 465 PRO A 273 REMARK 465 VAL A 274 REMARK 465 ASN A 275 REMARK 465 ASN A 276 REMARK 465 ILE A 277 REMARK 465 GLU A 278 REMARK 465 ASN A 279 REMARK 465 GLU A 280 REMARK 465 GLU A 281 REMARK 465 GLY A 282 REMARK 465 LEU A 283 REMARK 465 ASN A 284 REMARK 465 LYS A 285 REMARK 465 VAL A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLU A 289 REMARK 465 ASN A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 LYS A 293 REMARK 465 LEU A 294 REMARK 465 HIS A 295 REMARK 465 LYS A 296 REMARK 465 ALA A 297 REMARK 465 SER A 298 REMARK 465 ASN A 299 REMARK 465 ALA A 300 REMARK 465 SER A 301 REMARK 465 SER A 302 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 ILE A 305 REMARK 465 LYS A 306 REMARK 465 LYS A 307 REMARK 465 PRO A 308 REMARK 465 SER A 309 REMARK 465 LEU A 310 REMARK 465 ASP A 311 REMARK 465 PRO A 312 REMARK 465 LEU A 313 REMARK 465 ARG A 314 REMARK 465 GLU A 315 REMARK 465 VAL A 316 REMARK 465 SER A 317 REMARK 465 PHE A 318 REMARK 465 HIS A 319 REMARK 465 GLY A 320 REMARK 465 SER A 321 REMARK 465 THR A 322 REMARK 465 GLU A 323 REMARK 465 VAL A 324 REMARK 465 LEU A 325 REMARK 465 SER A 326 REMARK 465 LYS A 327 REMARK 465 ASP A 328 REMARK 465 ALA A 329 REMARK 465 GLU A 330 REMARK 465 LYS A 331 REMARK 465 LEU A 332 REMARK 465 ILE A 333 REMARK 465 ALA A 334 REMARK 465 VAL A 335 REMARK 465 ASP A 336 REMARK 465 THR A 337 REMARK 465 ILE A 338 REMARK 465 GLY A 339 REMARK 465 MET A 340 REMARK 465 ARG A 341 REMARK 465 VAL A 342 REMARK 465 ILE A 343 REMARK 465 ARG A 344 REMARK 465 HIS A 345 REMARK 465 THR A 346 REMARK 465 LEU A 347 REMARK 465 LEU A 348 REMARK 465 GLY A 349 REMARK 465 LEU A 350 REMARK 465 SER A 351 REMARK 465 LEU A 352 REMARK 465 THR A 353 REMARK 465 PRO A 354 REMARK 465 GLU A 355 REMARK 465 GLN A 356 REMARK 465 LYS A 357 REMARK 465 GLU A 358 REMARK 465 GLN A 359 REMARK 465 ILE A 360 REMARK 465 SER A 361 REMARK 465 LYS A 362 REMARK 465 PHE A 363 REMARK 465 LYS A 364 REMARK 465 PHE A 365 REMARK 465 ASP A 366 REMARK 465 ALA A 367 REMARK 465 ASN A 368 REMARK 465 ASP A 369 REMARK 465 ASN A 370 REMARK 465 VAL A 371 REMARK 465 LEU A 372 REMARK 465 LYS A 373 REMARK 465 MET A 374 REMARK 465 LYS A 375 REMARK 465 PRO A 376 REMARK 465 THR A 377 REMARK 465 LYS A 378 REMARK 465 ASN A 379 REMARK 465 ASP A 380 REMARK 465 ASP A 381 REMARK 465 ASN A 382 REMARK 465 ASN A 383 REMARK 465 ASN A 384 REMARK 465 SER A 385 REMARK 465 SER A 556 REMARK 465 GLN A 557 REMARK 465 ALA A 558 REMARK 465 PHE A 559 REMARK 465 ARG A 560 REMARK 465 ASP A 561 REMARK 465 VAL A 562 REMARK 465 ASN A 563 REMARK 465 LYS A 564 REMARK 465 LYS A 565 REMARK 465 SER A 566 REMARK 465 PRO A 567 REMARK 465 GLU A 568 REMARK 465 PHE A 569 REMARK 465 LYS A 570 REMARK 465 LYS A 571 REMARK 465 LEU A 572 REMARK 465 VAL A 573 REMARK 465 GLN A 574 REMARK 465 ASN A 575 REMARK 465 ALA A 576 REMARK 465 LYS A 577 REMARK 465 SER A 578 REMARK 465 VAL A 579 REMARK 465 PHE A 580 REMARK 465 ARG A 581 REMARK 465 SER A 582 REMARK 465 SER A 583 REMARK 465 GLN A 584 REMARK 465 ILE A 585 REMARK 465 GLU A 586 REMARK 465 GLN A 587 REMARK 465 SER A 588 REMARK 465 GLU A 1310 REMARK 465 LEU A 1311 REMARK 465 GLU A 1312 REMARK 465 ASN A 1313 REMARK 465 GLY A 1314 REMARK 465 GLY A 1315 REMARK 465 ASP A 1316 REMARK 465 GLU A 1317 REMARK 465 ASN A 1318 REMARK 465 SER A 1319 REMARK 465 DC N 101 REMARK 465 DG N 102 REMARK 465 DA N 103 REMARK 465 DA N 104 REMARK 465 DT N 105 REMARK 465 DA N 106 REMARK 465 DA N 107 REMARK 465 DG N 135 REMARK 465 DC N 136 REMARK 465 DG T 8 REMARK 465 DC T 9 REMARK 465 DT T 37 REMARK 465 DT T 38 REMARK 465 DA T 39 REMARK 465 DT T 40 REMARK 465 DT T 41 REMARK 465 DC T 42 REMARK 465 DG T 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 ASN B 211 CG OD1 ND2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 LYS B 296 CG CD CE NZ REMARK 470 ASP A 443 CG OD1 OD2 REMARK 470 ILE A 444 CG1 CG2 CD1 REMARK 470 ILE A 446 CG1 CG2 CD1 REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 LYS A 479 CG CD CE NZ REMARK 470 LEU A 480 CG CD1 CD2 REMARK 470 ASP A 482 CG OD1 OD2 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 LYS A 484 CG CD CE NZ REMARK 470 LEU A 486 CG CD1 CD2 REMARK 470 ASP A 504 CG OD1 OD2 REMARK 470 LYS A 624 CG CD CE NZ REMARK 470 ASP A 882 CG OD1 OD2 REMARK 470 ASP A 931 CG OD1 OD2 REMARK 470 LYS A 996 CG CD CE NZ REMARK 470 ASP A 998 CG OD1 OD2 REMARK 470 VAL A1091 CG1 CG2 REMARK 470 LYS A1094 CG CD CE NZ REMARK 470 LEU A1238 CG CD1 CD2 REMARK 470 LYS A1239 CG CD CE NZ REMARK 470 ASP A1243 CG OD1 OD2 REMARK 470 LEU A1244 CG CD1 CD2 REMARK 470 GLN A1246 CG CD OE1 NE2 REMARK 470 ILE A1249 CG1 CG2 CD1 REMARK 470 ILE A1251 CG1 CG2 CD1 REMARK 470 LYS A1253 CG CD CE NZ REMARK 470 ASP A1254 CG OD1 OD2 REMARK 470 LEU A1255 CG CD1 CD2 REMARK 470 ARG A1257 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1258 CG CD CE NZ REMARK 470 LEU A1259 CG CD1 CD2 REMARK 470 ARG A1261 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1267 CG OD1 OD2 REMARK 470 GLU A1268 CG CD OE1 OE2 REMARK 470 ILE A1269 CG1 CG2 CD1 REMARK 470 PHE A1271 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A1273 CG CD CE NZ REMARK 470 LYS A1274 CG CD CE NZ REMARK 470 GLU A1277 CG CD OE1 OE2 REMARK 470 LEU A1278 CG CD1 CD2 REMARK 470 LEU A1279 CG CD1 CD2 REMARK 470 ASN A1280 CG OD1 ND2 REMARK 470 SER A1281 OG REMARK 470 LEU A1283 CG CD1 CD2 REMARK 470 ILE A1284 CG1 CG2 CD1 REMARK 470 GLU A1285 CG CD OE1 OE2 REMARK 470 ASP A1286 CG OD1 OD2 REMARK 470 ARG A1287 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1288 CG OD1 ND2 REMARK 470 GLU A1291 CG CD OE1 OE2 REMARK 470 LYS A1292 CG CD CE NZ REMARK 470 MET A1293 CG SD CE REMARK 470 VAL A1297 CG1 CG2 REMARK 470 LEU A1299 CG CD1 CD2 REMARK 470 GLU A1301 CG CD OE1 OE2 REMARK 470 ASP A1302 CG OD1 OD2 REMARK 470 THR A1304 OG1 CG2 REMARK 470 ASP A1305 CG OD1 OD2 REMARK 470 LEU A1306 CG CD1 CD2 REMARK 470 LEU A1309 CG CD1 CD2 REMARK 470 MET A1321 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 487 OG1 THR A 491 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG N 108 C3' DG N 108 C2' -0.059 REMARK 500 DT N 112 O3' DG N 113 P 0.080 REMARK 500 DA N 133 O3' DT N 134 P -0.079 REMARK 500 DA T 13 O3' DT T 14 P -0.113 REMARK 500 DT T 14 O3' DG T 15 P -0.136 REMARK 500 DC T 25 O3' DA T 26 P -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA N 130 C5' - C4' - O4' ANGL. DEV. = 8.0 DEGREES REMARK 500 DT T 14 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT T 20 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DT T 34 C5' - C4' - O4' ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 69 71.34 53.85 REMARK 500 ILE B 112 -61.28 -96.32 REMARK 500 PHE B 323 47.87 -93.49 REMARK 500 SER A 703 114.20 -160.23 REMARK 500 LEU A 755 -116.86 57.98 REMARK 500 PHE A 875 58.90 -95.64 REMARK 500 HIS A 890 32.15 -93.00 REMARK 500 SER A1047 2.35 -65.61 REMARK 500 GLN A1135 -169.83 -167.06 REMARK 500 HIS A1188 -99.96 48.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15664 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 5-MER RNA, PPPGPGPAPAPA (IC5) REMARK 900 RELATED ID: 6YMV RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE PRE- REMARK 900 TRANSCRIPTION INITIATION COMPLEX REMARK 900 RELATED ID: EMD-10845 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE PRE- REMARK 900 TRANSCRIPTION INITIATION COMPLEX REMARK 900 RELATED ID: 6YMW RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX REMARK 900 RELATED ID: EMD-10846 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX REMARK 900 RELATED ID: 8Q63 RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF ALTERNATE STATE OF YEAST MITOCHONDRIAL RNA REMARK 900 POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, REMARK 900 PPPGPGPUPAPAPAPUPG, AND A WIDER POLYMERASE CLEFT (IC8') REMARK 900 RELATED ID: EMD-18183 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF ALTERNATE STATE OF YEAST MITOCHONDRIAL RNA REMARK 900 POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, REMARK 900 PPPGPGPUPAPAPAPUPG, AND A WIDER POLYMERASE CLEFT (IC8') REMARK 900 RELATED ID: 8AP1 RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH TWO GTP MOLECULES POISED FOR REMARK 900 DE NOVO INITIATION (IC2) REMARK 900 RELATED ID: EMD-15556 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH TWO GTP MOLECULES POISED FOR REMARK 900 DE NOVO INITIATION (IC2) REMARK 900 RELATED ID: 8ATT RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 4-MER RNA, PPPGPGPUPA (IC4) REMARK 900 RELATED ID: EMD-15662 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 4-MER RNA, PPPGPGPUPA (IC4) REMARK 900 RELATED ID: 8ATW RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 6-MER RNA, PPPGPGPAPAPAPU REMARK 900 (IC6) REMARK 900 RELATED ID: EMD-15665 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 6-MER RNA, PPPGPGPAPAPAPU REMARK 900 (IC6) REMARK 900 RELATED ID: 8C5U RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, PPPGPGPUPAPAPAPUPG REMARK 900 (IC8) REMARK 900 RELATED ID: EMD-16443 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, PPPGPGPUPAPAPAPUPG REMARK 900 (IC8) REMARK 900 RELATED ID: 8C5S RELATED DB: PDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 7-MER RNA, PPPGPGPUPAPAPAPU REMARK 900 (IC7) REMARK 900 RELATED ID: EMD-16442 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE REMARK 900 TRANSCRIPTION INITIATION COMPLEX WITH 7-MER RNA, PPPGPGPUPAPAPAPU REMARK 900 (IC7) DBREF 8ATV B 2 341 UNP P14908 MTF1_YEAST 2 341 DBREF 8ATV A 100 1351 UNP P13433 RPOM_YEAST 100 1351 DBREF 8ATV N 101 136 PDB 8ATV 8ATV 101 136 DBREF 8ATV T 8 43 PDB 8ATV 8ATV 8 43 DBREF 8ATV C 102 105 PDB 8ATV 8ATV 102 105 SEQADV 8ATV MET B -12 UNP P14908 INITIATING METHIONINE SEQADV 8ATV GLY B -11 UNP P14908 EXPRESSION TAG SEQADV 8ATV GLY B -10 UNP P14908 EXPRESSION TAG SEQADV 8ATV SER B -9 UNP P14908 EXPRESSION TAG SEQADV 8ATV HIS B -8 UNP P14908 EXPRESSION TAG SEQADV 8ATV HIS B -7 UNP P14908 EXPRESSION TAG SEQADV 8ATV HIS B -6 UNP P14908 EXPRESSION TAG SEQADV 8ATV HIS B -5 UNP P14908 EXPRESSION TAG SEQADV 8ATV HIS B -4 UNP P14908 EXPRESSION TAG SEQADV 8ATV HIS B -3 UNP P14908 EXPRESSION TAG SEQADV 8ATV GLY B -2 UNP P14908 EXPRESSION TAG SEQADV 8ATV MET B -1 UNP P14908 EXPRESSION TAG SEQADV 8ATV ALA B 0 UNP P14908 EXPRESSION TAG SEQADV 8ATV SER B 1 UNP P14908 EXPRESSION TAG SEQADV 8ATV GLY A 90 UNP P13433 EXPRESSION TAG SEQADV 8ATV ALA A 91 UNP P13433 EXPRESSION TAG SEQADV 8ATV MET A 92 UNP P13433 EXPRESSION TAG SEQADV 8ATV GLY A 93 UNP P13433 EXPRESSION TAG SEQADV 8ATV SER A 94 UNP P13433 EXPRESSION TAG SEQADV 8ATV GLY A 95 UNP P13433 EXPRESSION TAG SEQADV 8ATV ILE A 96 UNP P13433 EXPRESSION TAG SEQADV 8ATV GLN A 97 UNP P13433 EXPRESSION TAG SEQADV 8ATV ARG A 98 UNP P13433 EXPRESSION TAG SEQADV 8ATV PRO A 99 UNP P13433 EXPRESSION TAG SEQRES 1 B 354 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 B 354 SER SER VAL PRO ILE PRO GLY ILE LYS ASP ILE SER LYS SEQRES 3 B 354 LEU LYS PHE PHE TYR GLY PHE LYS TYR LEU TRP ASN PRO SEQRES 4 B 354 THR VAL TYR ASN LYS ILE PHE ASP LYS LEU ASP LEU THR SEQRES 5 B 354 LYS THR TYR LYS HIS PRO GLU GLU LEU LYS VAL LEU ASP SEQRES 6 B 354 LEU TYR PRO GLY VAL GLY ILE GLN SER ALA ILE PHE TYR SEQRES 7 B 354 ASN LYS TYR CYS PRO ARG GLN TYR SER LEU LEU GLU LYS SEQRES 8 B 354 ARG SER SER LEU TYR LYS PHE LEU ASN ALA LYS PHE GLU SEQRES 9 B 354 GLY SER PRO LEU GLN ILE LEU LYS ARG ASP PRO TYR ASP SEQRES 10 B 354 TRP SER THR TYR SER ASN LEU ILE ASP GLU GLU ARG ILE SEQRES 11 B 354 PHE VAL PRO GLU VAL GLN SER SER ASP HIS ILE ASN ASP SEQRES 12 B 354 LYS PHE LEU THR VAL ALA ASN VAL THR GLY GLU GLY SER SEQRES 13 B 354 GLU GLY LEU ILE MET GLN TRP LEU SER CYS ILE GLY ASN SEQRES 14 B 354 LYS ASN TRP LEU TYR ARG PHE GLY LYS VAL LYS MET LEU SEQRES 15 B 354 LEU TRP MET PRO SER THR THR ALA ARG LYS LEU LEU ALA SEQRES 16 B 354 ARG PRO GLY MET HIS SER ARG SER LYS CYS SER VAL VAL SEQRES 17 B 354 ARG GLU ALA PHE THR ASP THR LYS LEU ILE ALA ILE SER SEQRES 18 B 354 ASP ALA ASN GLU LEU LYS GLY PHE ASP SER GLN CYS ILE SEQRES 19 B 354 GLU GLU TRP ASP PRO ILE LEU PHE SER ALA ALA GLU ILE SEQRES 20 B 354 TRP PRO THR LYS GLY LYS PRO ILE ALA LEU VAL GLU MET SEQRES 21 B 354 ASP PRO ILE ASP PHE ASP PHE ASP VAL ASP ASN TRP ASP SEQRES 22 B 354 TYR VAL THR ARG HIS LEU MET ILE LEU LYS ARG THR PRO SEQRES 23 B 354 LEU ASN THR VAL MET ASP SER LEU GLY HIS GLY GLY GLN SEQRES 24 B 354 GLN TYR PHE ASN SER ARG ILE THR ASP LYS ASP LEU LEU SEQRES 25 B 354 LYS LYS CYS PRO ILE ASP LEU THR ASN ASP GLU PHE ILE SEQRES 26 B 354 TYR LEU THR LYS LEU PHE MET GLU TRP PRO PHE LYS PRO SEQRES 27 B 354 ASP ILE LEU MET ASP PHE VAL ASP MET TYR GLN THR GLU SEQRES 28 B 354 HIS SER GLY SEQRES 1 A 1262 GLY ALA MET GLY SER GLY ILE GLN ARG PRO SER ALA VAL SEQRES 2 A 1262 THR SER MET THR ARG THR ARG ASP VAL MET GLN LEU TRP SEQRES 3 A 1262 SER LEU LEU GLU ALA CYS LEU GLN SER ASN LEU MET LYS SEQRES 4 A 1262 ARG ALA PHE SER ILE LEU GLU SER LEU TYR LEU VAL PRO SEQRES 5 A 1262 GLU HIS LYS GLN ARG PHE ILE GLU ASP TYR ASN MET TYR SEQRES 6 A 1262 LEU ASN SER PHE SER LYS ASN ASP PRO ASN PHE PRO ILE SEQRES 7 A 1262 LEU LYS MET ASN GLU LYS LEU THR ASN ASP LEU GLU THR SEQRES 8 A 1262 SER PHE LYS ASP VAL ASN TYR ASN ASP LYS THR LEU ALA SEQRES 9 A 1262 ILE MET ILE HIS HIS ALA LEU ASN PHE HIS SER THR THR SEQRES 10 A 1262 SER SER MET LEU LEU LYS PRO ILE ILE SER ALA TYR LEU SEQRES 11 A 1262 LYS MET SER VAL ASN GLY ILE ARG GLU ILE PHE SER CYS SEQRES 12 A 1262 LEU ASP ILE LEU THR ILE SER ASP LEU ASN ILE LEU MET SEQRES 13 A 1262 ASN ASP LEU LYS VAL ILE THR PRO SER GLN LEU PRO ASN SEQRES 14 A 1262 SER VAL ARG PRO ILE LEU GLU SER LEU THR LEU SER PRO SEQRES 15 A 1262 THR PRO VAL ASN ASN ILE GLU ASN GLU GLU GLY LEU ASN SEQRES 16 A 1262 LYS VAL GLU ALA GLU ASN ASP SER LYS LEU HIS LYS ALA SEQRES 17 A 1262 SER ASN ALA SER SER ASP SER ILE LYS LYS PRO SER LEU SEQRES 18 A 1262 ASP PRO LEU ARG GLU VAL SER PHE HIS GLY SER THR GLU SEQRES 19 A 1262 VAL LEU SER LYS ASP ALA GLU LYS LEU ILE ALA VAL ASP SEQRES 20 A 1262 THR ILE GLY MET ARG VAL ILE ARG HIS THR LEU LEU GLY SEQRES 21 A 1262 LEU SER LEU THR PRO GLU GLN LYS GLU GLN ILE SER LYS SEQRES 22 A 1262 PHE LYS PHE ASP ALA ASN ASP ASN VAL LEU LYS MET LYS SEQRES 23 A 1262 PRO THR LYS ASN ASP ASP ASN ASN ASN SER ILE ASN PHE SEQRES 24 A 1262 PHE GLU ILE TYR ASN SER LEU PRO THR LEU GLU GLU LYS SEQRES 25 A 1262 LYS ALA PHE GLU SER ALA LEU ASN ILE PHE ASN GLN ASP SEQRES 26 A 1262 ARG GLN LYS VAL LEU GLU ASN ARG ALA THR GLU ALA ALA SEQRES 27 A 1262 ARG GLU ARG TRP LYS HIS ASP PHE GLU GLU ALA LYS ALA SEQRES 28 A 1262 ARG GLY ASP ILE SER ILE GLU LYS ASN LEU ASN VAL LYS SEQRES 29 A 1262 LEU TRP LYS TRP TYR ASN GLU MET LEU PRO LEU VAL LYS SEQRES 30 A 1262 GLU GLU ILE ASN HIS CYS ARG SER LEU LEU SER GLU LYS SEQRES 31 A 1262 LEU SER ASP LYS LYS GLY LEU ASN LYS VAL ASP THR ASN SEQRES 32 A 1262 ARG LEU GLY TYR GLY PRO TYR LEU THR LEU ILE ASP PRO SEQRES 33 A 1262 GLY LYS MET CYS VAL ILE THR ILE LEU GLU LEU LEU LYS SEQRES 34 A 1262 LEU ASN SER THR GLY GLY VAL ILE GLU GLY MET ARG THR SEQRES 35 A 1262 ALA ARG ALA VAL ILE SER VAL GLY LYS ALA ILE GLU MET SEQRES 36 A 1262 GLU PHE ARG SER GLU GLN VAL LEU LYS SER GLU SER GLN SEQRES 37 A 1262 ALA PHE ARG ASP VAL ASN LYS LYS SER PRO GLU PHE LYS SEQRES 38 A 1262 LYS LEU VAL GLN ASN ALA LYS SER VAL PHE ARG SER SER SEQRES 39 A 1262 GLN ILE GLU GLN SER LYS ILE LEU TRP PRO GLN SER ILE SEQRES 40 A 1262 ARG ALA ARG ILE GLY SER VAL LEU ILE SER MET LEU ILE SEQRES 41 A 1262 GLN VAL ALA LYS VAL SER VAL GLN GLY VAL ASP PRO VAL SEQRES 42 A 1262 THR LYS ALA LYS VAL HIS GLY GLU ALA PRO ALA PHE ALA SEQRES 43 A 1262 HIS GLY TYR GLN TYR HIS ASN GLY SER LYS LEU GLY VAL SEQRES 44 A 1262 LEU LYS ILE HIS LYS THR LEU ILE ARG GLN LEU ASN GLY SEQRES 45 A 1262 GLU ARG LEU ILE ALA SER VAL GLN PRO GLN LEU LEU PRO SEQRES 46 A 1262 MET LEU VAL GLU PRO LYS PRO TRP VAL ASN TRP ARG SER SEQRES 47 A 1262 GLY GLY TYR HIS TYR THR GLN SER THR LEU LEU ARG THR SEQRES 48 A 1262 LYS ASP SER PRO GLU GLN VAL ALA TYR LEU LYS ALA ALA SEQRES 49 A 1262 SER ASP ASN GLY ASP ILE ASP ARG VAL TYR ASP GLY LEU SEQRES 50 A 1262 ASN VAL LEU GLY ARG THR PRO TRP THR VAL ASN ARG LYS SEQRES 51 A 1262 VAL PHE ASP VAL VAL SER GLN VAL TRP ASN LYS GLY GLU SEQRES 52 A 1262 GLY PHE LEU ASP ILE PRO GLY ALA GLN ASP GLU MET VAL SEQRES 53 A 1262 LEU PRO PRO ALA PRO PRO LYS ASN SER ASP PRO SER ILE SEQRES 54 A 1262 LEU ARG ALA TRP LYS LEU GLN VAL LYS THR ILE ALA ASN SEQRES 55 A 1262 LYS PHE SER SER ASP ARG SER ASN ARG CYS ASP THR ASN SEQRES 56 A 1262 TYR LYS LEU GLU ILE ALA ARG ALA PHE LEU GLY GLU LYS SEQRES 57 A 1262 LEU TYR PHE PRO HIS ASN LEU ASP PHE ARG GLY ARG ALA SEQRES 58 A 1262 TYR PRO LEU SER PRO HIS PHE ASN HIS LEU GLY ASN ASP SEQRES 59 A 1262 MET SER ARG GLY LEU LEU ILE PHE TRP HIS GLY LYS LYS SEQRES 60 A 1262 LEU GLY PRO SER GLY LEU LYS TRP LEU LYS ILE HIS LEU SEQRES 61 A 1262 SER ASN LEU PHE GLY PHE ASP LYS LEU PRO LEU LYS ASP SEQRES 62 A 1262 ARG VAL ALA PHE THR GLU SER HIS LEU GLN ASP ILE LYS SEQRES 63 A 1262 ASP SER ALA GLU ASN PRO LEU THR GLY ASP ARG TRP TRP SEQRES 64 A 1262 THR THR ALA ASP LYS PRO TRP GLN ALA LEU ALA THR CYS SEQRES 65 A 1262 PHE GLU LEU ASN GLU VAL MET LYS MET ASP ASN PRO GLU SEQRES 66 A 1262 GLU PHE ILE SER HIS GLN PRO VAL HIS GLN ASP GLY THR SEQRES 67 A 1262 CYS ASN GLY LEU GLN HIS TYR ALA ALA LEU GLY GLY ASP SEQRES 68 A 1262 VAL GLU GLY ALA THR GLN VAL ASN LEU VAL PRO SER ASP SEQRES 69 A 1262 LYS PRO GLN ASP VAL TYR ALA HIS VAL ALA ARG LEU VAL SEQRES 70 A 1262 GLN LYS ARG LEU GLU ILE ALA ALA GLU LYS GLY ASP GLU SEQRES 71 A 1262 ASN ALA LYS ILE LEU LYS ASP LYS ILE THR ARG LYS VAL SEQRES 72 A 1262 VAL LYS GLN THR VAL MET THR ASN VAL TYR GLY VAL THR SEQRES 73 A 1262 TYR VAL GLY ALA THR PHE GLN ILE ALA LYS GLN LEU SER SEQRES 74 A 1262 PRO ILE PHE ASP ASP ARG LYS GLU SER LEU ASP PHE SER SEQRES 75 A 1262 LYS TYR LEU THR LYS HIS VAL PHE SER ALA ILE ARG GLU SEQRES 76 A 1262 LEU PHE HIS SER ALA HIS LEU ILE GLN ASP TRP LEU GLY SEQRES 77 A 1262 GLU SER ALA LYS ARG ILE SER LYS SER ILE ARG LEU ASP SEQRES 78 A 1262 VAL ASP GLU LYS SER PHE LYS ASN GLY ASN LYS PRO ASP SEQRES 79 A 1262 PHE MET SER SER VAL ILE TRP THR THR PRO LEU GLY LEU SEQRES 80 A 1262 PRO ILE VAL GLN PRO TYR ARG GLU GLU SER LYS LYS GLN SEQRES 81 A 1262 VAL GLU THR ASN LEU GLN THR VAL PHE ILE SER ASP PRO SEQRES 82 A 1262 PHE ALA VAL ASN PRO VAL ASN ALA ARG ARG GLN LYS ALA SEQRES 83 A 1262 GLY LEU PRO PRO ASN PHE ILE HIS SER LEU ASP ALA SER SEQRES 84 A 1262 HIS MET LEU LEU SER ALA ALA GLU CYS GLY LYS GLN GLY SEQRES 85 A 1262 LEU ASP PHE ALA SER VAL HIS ASP SER TYR TRP THR HIS SEQRES 86 A 1262 ALA SER ASP ILE ASP THR MET ASN VAL VAL LEU ARG GLU SEQRES 87 A 1262 GLN PHE ILE LYS LEU HIS GLU VAL ASP LEU VAL LEU ARG SEQRES 88 A 1262 LEU LYS GLU GLU PHE ASP GLN ARG TYR LYS ASN TYR VAL SEQRES 89 A 1262 LYS ILE GLY LYS LEU LYS ARG SER THR ASP LEU ALA GLN SEQRES 90 A 1262 LYS ILE ILE ARG ILE ARG LYS ASP LEU SER ARG LYS LEU SEQRES 91 A 1262 GLY ARG SER THR THR LEU ALA ASP GLU ILE TYR PHE GLU SEQRES 92 A 1262 LYS LYS ARG GLN GLU LEU LEU ASN SER PRO LEU ILE GLU SEQRES 93 A 1262 ASP ARG ASN VAL GLY GLU LYS MET VAL THR THR VAL SER SEQRES 94 A 1262 LEU PHE GLU ASP ILE THR ASP LEU ASP ALA LEU GLU LEU SEQRES 95 A 1262 GLU ASN GLY GLY ASP GLU ASN SER GLY MET SER VAL LEU SEQRES 96 A 1262 LEU PRO LEU ARG LEU PRO GLU ILE PRO PRO LYS GLY ASP SEQRES 97 A 1262 PHE ASP VAL THR VAL LEU ARG ASN SER GLN TYR PHE PHE SEQRES 98 A 1262 SER SEQRES 1 N 36 DC DG DA DA DT DA DA DG DT DA DT DT DG SEQRES 2 N 36 DA DT DA DT DA DA DG DT DA DA DA DA DA SEQRES 3 N 36 DT DG DC DA DT DA DA DT DG DC SEQRES 1 T 36 DG DC DA DT DT DA DT DG DC DA DT DT DT SEQRES 2 T 36 DC DC DG DA DC DA DA DT DA DT DC DA DA SEQRES 3 T 36 DT DA DC DT DT DA DT DT DC DG SEQRES 1 C 4 G A A A HET GTP C 201 32 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 6 GTP C10 H16 N5 O14 P3 HELIX 1 AA1 GLY B 7 SER B 12 1 6 HELIX 2 AA2 ASN B 25 ASP B 37 1 13 HELIX 3 AA3 ASP B 37 TYR B 42 1 6 HELIX 4 AA4 HIS B 44 GLU B 47 5 4 HELIX 5 AA5 GLY B 58 CYS B 69 1 12 HELIX 6 AA6 ARG B 79 GLU B 91 1 13 HELIX 7 AA7 ASP B 104 ASP B 113 1 10 HELIX 8 AA8 SER B 143 LYS B 157 1 15 HELIX 9 AA9 SER B 174 LEU B 181 1 8 HELIX 10 AB1 SER B 190 PHE B 199 1 10 HELIX 11 AB2 GLU B 212 PHE B 216 5 5 HELIX 12 AB3 ASP B 217 ASP B 225 1 9 HELIX 13 AB4 SER B 230 ILE B 234 5 5 HELIX 14 AB5 ASP B 255 MET B 267 1 13 HELIX 15 AB6 PRO B 273 GLY B 282 5 10 HELIX 16 AB7 GLY B 284 ILE B 293 1 10 HELIX 17 AB8 LYS B 296 LYS B 300 5 5 HELIX 18 AB9 THR B 307 TRP B 321 1 15 HELIX 19 AC1 PHE A 388 LEU A 395 1 8 HELIX 20 AC2 THR A 397 ASN A 412 1 16 HELIX 21 AC3 ASN A 412 ASN A 421 1 10 HELIX 22 AC4 ARG A 422 ARG A 441 1 20 HELIX 23 AC5 LYS A 448 GLU A 478 1 31 HELIX 24 AC6 LEU A 486 GLY A 497 1 12 HELIX 25 AC7 ASP A 504 LEU A 519 1 16 HELIX 26 AC8 THR A 531 GLU A 555 1 25 HELIX 27 AC9 PRO A 593 ALA A 612 1 20 HELIX 28 AD1 HIS A 652 ASN A 660 1 9 HELIX 29 AD2 ARG A 663 VAL A 668 1 6 HELIX 30 AD3 SER A 703 GLY A 717 1 15 HELIX 31 AD4 ASP A 720 ARG A 731 1 12 HELIX 32 AD5 ASN A 737 GLY A 751 1 15 HELIX 33 AD6 ASP A 775 PHE A 813 1 39 HELIX 34 AD7 ASN A 842 LEU A 848 1 7 HELIX 35 AD8 SER A 860 PHE A 873 1 14 HELIX 36 AD9 PRO A 879 HIS A 890 1 12 HELIX 37 AE1 HIS A 890 ASN A 900 1 11 HELIX 38 AE2 TRP A 907 ALA A 911 5 5 HELIX 39 AE3 LYS A 913 LYS A 929 1 17 HELIX 40 AE4 ASN A 932 GLU A 935 5 4 HELIX 41 AE5 CYS A 948 GLY A 959 1 12 HELIX 42 AE6 ASP A 960 VAL A 967 1 8 HELIX 43 AE7 ASP A 977 ALA A 994 1 18 HELIX 44 AE8 ASP A 998 LEU A 1004 1 7 HELIX 45 AE9 THR A 1009 VAL A 1021 1 13 HELIX 46 AF1 THR A 1025 SER A 1038 1 14 HELIX 47 AF2 SER A 1047 PHE A 1066 1 20 HELIX 48 AF3 HIS A 1067 LYS A 1085 1 19 HELIX 49 AF4 ASP A 1090 LYS A 1094 5 5 HELIX 50 AF5 ASN A 1149 GLN A 1180 1 32 HELIX 51 AF6 ASP A 1197 HIS A 1213 1 17 HELIX 52 AF7 ASP A 1216 TYR A 1229 1 14 HELIX 53 AF8 THR A 1242 GLY A 1260 1 19 HELIX 54 AF9 THR A 1264 SER A 1281 1 18 HELIX 55 AG1 LEU A 1283 MET A 1293 1 11 HELIX 56 AG2 VAL A 1297 GLU A 1301 5 5 HELIX 57 AG3 ASP A 1339 SER A 1346 5 8 SHEET 1 AA1 8 GLN B 96 LEU B 98 0 SHEET 2 AA1 8 GLN B 72 LEU B 76 1 N LEU B 75 O LEU B 98 SHEET 3 AA1 8 LYS B 49 LEU B 53 1 N VAL B 50 O GLN B 72 SHEET 4 AA1 8 PHE B 132 ASN B 137 1 O VAL B 135 N LEU B 51 SHEET 5 AA1 8 LYS B 167 PRO B 173 1 O LEU B 169 N ALA B 136 SHEET 6 AA1 8 ILE B 242 PRO B 249 -1 O ALA B 243 N MET B 172 SHEET 7 AA1 8 THR B 200 ILE B 207 -1 N ALA B 206 O LEU B 244 SHEET 8 AA1 8 ILE B 227 LEU B 228 1 O ILE B 227 N ILE B 207 SHEET 1 AA2 3 GLY A 528 ARG A 530 0 SHEET 2 AA2 3 LYS A 645 ILE A 651 -1 O LEU A 649 N MET A 529 SHEET 3 AA2 3 PHE A 634 TYR A 640 -1 N GLY A 637 O VAL A 648 SHEET 1 AA3 2 LYS A 613 VAL A 619 0 SHEET 2 AA3 2 LYS A 626 PRO A 632 -1 O VAL A 627 N GLY A 618 SHEET 1 AA4 2 LYS A 680 ASN A 684 0 SHEET 2 AA4 2 SER A 687 GLY A 689 -1 O GLY A 689 N LYS A 680 SHEET 1 AA5 3 LEU A 698 ARG A 699 0 SHEET 2 AA5 3 HIS A 822 ASP A 825 1 O LEU A 824 N ARG A 699 SHEET 3 AA5 3 ALA A 830 PRO A 832 -1 O TYR A 831 N ASN A 823 SHEET 1 AA6 2 TRP A 734 VAL A 736 0 SHEET 2 AA6 2 LEU A 849 PHE A 851 -1 O ILE A 850 N THR A 735 SHEET 1 AA7 2 LYS A 855 LYS A 856 0 SHEET 2 AA7 2 ILE A 937 SER A 938 -1 O SER A 938 N LYS A 855 SHEET 1 AA8 3 VAL A 942 ASP A 945 0 SHEET 2 AA8 3 SER A1190 THR A1193 -1 O THR A1193 N VAL A 942 SHEET 3 AA8 3 ALA A1185 VAL A1187 -1 N ALA A1185 O TRP A1192 SHEET 1 AA9 3 ILE A1087 ARG A1088 0 SHEET 2 AA9 3 TYR A1232 LEU A1238 -1 O VAL A1233 N ILE A1087 SHEET 3 AA9 3 MET A1321 PRO A1326 -1 O VAL A1323 N GLY A1236 SHEET 1 AB1 2 ILE A1109 THR A1111 0 SHEET 2 AB1 2 PRO A1117 VAL A1119 -1 O ILE A1118 N TRP A1110 SHEET 1 AB2 2 LYS A1127 GLU A1131 0 SHEET 2 AB2 2 THR A1136 SER A1140 -1 O VAL A1137 N VAL A1130 LINK P G C 102 O3' GTP C 201 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000