HEADER PROTEIN FIBRIL 25-AUG-22 8AUR TITLE CRYO-EM STRUCTURE OF A TASA FIBRE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR BIOFILM MATRIX COMPONENT; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SPORE COAT-ASSOCIATED PROTEIN N,TRANSLOCATION-DEPENDENT COMPND 5 ANTIMICROBIAL SPORE COMPONENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168 KEYWDS BIOFILM MATRIX FIBRE, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR J.BOEHNING,T.A.M.BHARAT REVDAT 1 30-NOV-22 8AUR 0 JRNL AUTH J.BOHNING,M.GHRAYEB,C.PEDEBOS,D.K.ABBAS,S.KHALID,L.CHAI, JRNL AUTH 2 T.A.M.BHARAT JRNL TITL DONOR-STRAND EXCHANGE DRIVES ASSEMBLY OF THE TASA SCAFFOLD JRNL TITL 2 IN BACILLUS SUBTILIS BIOFILMS. JRNL REF NAT COMMUN V. 13 7082 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36400765 JRNL DOI 10.1038/S41467-022-34700-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.BOHNING,M.GHRAYEB,C.PEDEBOS,D.K.ABBAS,S.KHALID,L.CHAI, REMARK 1 AUTH 2 T.A.M.BHARAT REMARK 1 TITL MOLECULAR ARCHITECTURE OF THE TASA BIOFILM SCAFFOLD IN REMARK 1 TITL 2 BACILLUS SUBTILIS REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.03.14.484220 REMARK 2 REMARK 2 RESOLUTION. 3.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.470 REMARK 3 NUMBER OF PARTICLES : 103009 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8AUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292125026. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : THREE-SUBUNIT TASA FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4850.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 261 REMARK 465 ASN B 261 REMARK 465 ASN C 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 50 -61.17 -91.01 REMARK 500 VAL A 55 -65.69 66.75 REMARK 500 LYS A 118 -131.46 54.78 REMARK 500 TYR A 181 53.90 -90.07 REMARK 500 VAL A 184 71.45 39.29 REMARK 500 GLU B 50 -61.12 -91.03 REMARK 500 VAL B 55 -65.69 66.80 REMARK 500 LYS B 118 -131.44 54.72 REMARK 500 TYR B 181 53.94 -90.09 REMARK 500 VAL B 184 71.36 39.42 REMARK 500 GLU C 50 -61.22 -90.94 REMARK 500 VAL C 55 -65.72 66.72 REMARK 500 LYS C 118 -131.41 54.78 REMARK 500 TYR C 181 53.96 -90.12 REMARK 500 VAL C 184 71.36 39.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-15673 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF A TASA FIBRE DBREF 8AUR A 28 261 UNP P54507 TASA_BACSU 28 261 DBREF 8AUR B 28 261 UNP P54507 TASA_BACSU 28 261 DBREF 8AUR C 28 261 UNP P54507 TASA_BACSU 28 261 SEQRES 1 A 234 ALA PHE ASN ASP ILE LYS SER LYS ASP ALA THR PHE ALA SEQRES 2 A 234 SER GLY THR LEU ASP LEU SER ALA LYS GLU ASN SER ALA SEQRES 3 A 234 SER VAL ASN LEU SER ASN LEU LYS PRO GLY ASP LYS LEU SEQRES 4 A 234 THR LYS ASP PHE GLN PHE GLU ASN ASN GLY SER LEU ALA SEQRES 5 A 234 ILE LYS GLU VAL LEU MET ALA LEU ASN TYR GLY ASP PHE SEQRES 6 A 234 LYS ALA ASN GLY GLY SER ASN THR SER PRO GLU ASP PHE SEQRES 7 A 234 LEU SER GLN PHE GLU VAL THR LEU LEU THR VAL GLY LYS SEQRES 8 A 234 GLU GLY GLY ASN GLY TYR PRO LYS ASN ILE ILE LEU ASP SEQRES 9 A 234 ASP ALA ASN LEU LYS ASP LEU TYR LEU MET SER ALA LYS SEQRES 10 A 234 ASN ASP ALA ALA ALA ALA GLU LYS ILE LYS LYS GLN ILE SEQRES 11 A 234 ASP PRO LYS PHE LEU ASN ALA SER GLY LYS VAL ASN VAL SEQRES 12 A 234 ALA THR ILE ASP GLY LYS THR ALA PRO GLU TYR ASP GLY SEQRES 13 A 234 VAL PRO LYS THR PRO THR ASP PHE ASP GLN VAL GLN MET SEQRES 14 A 234 GLU ILE GLN PHE LYS ASP ASP LYS THR LYS ASP GLU LYS SEQRES 15 A 234 GLY LEU MET VAL GLN ASN LYS TYR GLN GLY ASN SER ILE SEQRES 16 A 234 LYS LEU GLN PHE SER PHE GLU ALA THR GLN TRP ASN GLY SEQRES 17 A 234 LEU THR ILE LYS LYS ASP HIS THR ASP LYS ASP GLY TYR SEQRES 18 A 234 VAL LYS GLU ASN GLU LYS ALA HIS SER GLU ASP LYS ASN SEQRES 1 B 234 ALA PHE ASN ASP ILE LYS SER LYS ASP ALA THR PHE ALA SEQRES 2 B 234 SER GLY THR LEU ASP LEU SER ALA LYS GLU ASN SER ALA SEQRES 3 B 234 SER VAL ASN LEU SER ASN LEU LYS PRO GLY ASP LYS LEU SEQRES 4 B 234 THR LYS ASP PHE GLN PHE GLU ASN ASN GLY SER LEU ALA SEQRES 5 B 234 ILE LYS GLU VAL LEU MET ALA LEU ASN TYR GLY ASP PHE SEQRES 6 B 234 LYS ALA ASN GLY GLY SER ASN THR SER PRO GLU ASP PHE SEQRES 7 B 234 LEU SER GLN PHE GLU VAL THR LEU LEU THR VAL GLY LYS SEQRES 8 B 234 GLU GLY GLY ASN GLY TYR PRO LYS ASN ILE ILE LEU ASP SEQRES 9 B 234 ASP ALA ASN LEU LYS ASP LEU TYR LEU MET SER ALA LYS SEQRES 10 B 234 ASN ASP ALA ALA ALA ALA GLU LYS ILE LYS LYS GLN ILE SEQRES 11 B 234 ASP PRO LYS PHE LEU ASN ALA SER GLY LYS VAL ASN VAL SEQRES 12 B 234 ALA THR ILE ASP GLY LYS THR ALA PRO GLU TYR ASP GLY SEQRES 13 B 234 VAL PRO LYS THR PRO THR ASP PHE ASP GLN VAL GLN MET SEQRES 14 B 234 GLU ILE GLN PHE LYS ASP ASP LYS THR LYS ASP GLU LYS SEQRES 15 B 234 GLY LEU MET VAL GLN ASN LYS TYR GLN GLY ASN SER ILE SEQRES 16 B 234 LYS LEU GLN PHE SER PHE GLU ALA THR GLN TRP ASN GLY SEQRES 17 B 234 LEU THR ILE LYS LYS ASP HIS THR ASP LYS ASP GLY TYR SEQRES 18 B 234 VAL LYS GLU ASN GLU LYS ALA HIS SER GLU ASP LYS ASN SEQRES 1 C 234 ALA PHE ASN ASP ILE LYS SER LYS ASP ALA THR PHE ALA SEQRES 2 C 234 SER GLY THR LEU ASP LEU SER ALA LYS GLU ASN SER ALA SEQRES 3 C 234 SER VAL ASN LEU SER ASN LEU LYS PRO GLY ASP LYS LEU SEQRES 4 C 234 THR LYS ASP PHE GLN PHE GLU ASN ASN GLY SER LEU ALA SEQRES 5 C 234 ILE LYS GLU VAL LEU MET ALA LEU ASN TYR GLY ASP PHE SEQRES 6 C 234 LYS ALA ASN GLY GLY SER ASN THR SER PRO GLU ASP PHE SEQRES 7 C 234 LEU SER GLN PHE GLU VAL THR LEU LEU THR VAL GLY LYS SEQRES 8 C 234 GLU GLY GLY ASN GLY TYR PRO LYS ASN ILE ILE LEU ASP SEQRES 9 C 234 ASP ALA ASN LEU LYS ASP LEU TYR LEU MET SER ALA LYS SEQRES 10 C 234 ASN ASP ALA ALA ALA ALA GLU LYS ILE LYS LYS GLN ILE SEQRES 11 C 234 ASP PRO LYS PHE LEU ASN ALA SER GLY LYS VAL ASN VAL SEQRES 12 C 234 ALA THR ILE ASP GLY LYS THR ALA PRO GLU TYR ASP GLY SEQRES 13 C 234 VAL PRO LYS THR PRO THR ASP PHE ASP GLN VAL GLN MET SEQRES 14 C 234 GLU ILE GLN PHE LYS ASP ASP LYS THR LYS ASP GLU LYS SEQRES 15 C 234 GLY LEU MET VAL GLN ASN LYS TYR GLN GLY ASN SER ILE SEQRES 16 C 234 LYS LEU GLN PHE SER PHE GLU ALA THR GLN TRP ASN GLY SEQRES 17 C 234 LEU THR ILE LYS LYS ASP HIS THR ASP LYS ASP GLY TYR SEQRES 18 C 234 VAL LYS GLU ASN GLU LYS ALA HIS SER GLU ASP LYS ASN HELIX 1 AA1 SER A 101 SER A 107 1 7 HELIX 2 AA2 ASN A 134 ALA A 143 1 10 HELIX 3 AA3 ASP A 146 GLN A 156 1 11 HELIX 4 AA4 ILE A 157 LEU A 162 5 6 HELIX 5 AA5 MET A 212 TYR A 217 5 6 HELIX 6 AA6 LYS A 250 LYS A 254 5 5 HELIX 7 AA7 SER B 101 SER B 107 1 7 HELIX 8 AA8 ASN B 134 ALA B 143 1 10 HELIX 9 AA9 ASP B 146 GLN B 156 1 11 HELIX 10 AB1 ILE B 157 LEU B 162 5 6 HELIX 11 AB2 MET B 212 TYR B 217 5 6 HELIX 12 AB3 LYS B 250 LYS B 254 5 5 HELIX 13 AB4 SER C 101 SER C 107 1 7 HELIX 14 AB5 ASN C 134 ALA C 143 1 10 HELIX 15 AB6 ASP C 146 GLN C 156 1 11 HELIX 16 AB7 ILE C 157 LEU C 162 5 6 HELIX 17 AB8 MET C 212 TYR C 217 5 6 HELIX 18 AB9 LYS C 250 LYS C 254 5 5 SHEET 1 AA1 5 LEU B 57 LEU B 60 0 SHEET 2 AA1 5 ASN A 30 SER A 41 1 N ALA A 40 O LEU B 60 SHEET 3 AA1 5 SER B 221 GLN B 232 -1 O PHE B 228 N LYS A 33 SHEET 4 AA1 5 ILE B 80 GLY B 90 -1 N ASN B 88 O GLN B 225 SHEET 5 AA1 5 VAL B 168 ASN B 169 -1 O VAL B 168 N MET B 85 SHEET 1 AA2 5 LEU A 57 LEU A 60 0 SHEET 2 AA2 5 ASN C 30 SER C 41 1 O ALA C 40 N LEU A 60 SHEET 3 AA2 5 SER A 221 GLN A 232 -1 N LEU A 224 O ALA C 37 SHEET 4 AA2 5 ILE A 80 GLY A 90 -1 N ASN A 88 O GLN A 225 SHEET 5 AA2 5 VAL A 168 ASN A 169 -1 O VAL A 168 N MET A 85 SHEET 1 AA3 3 LYS A 68 GLU A 73 0 SHEET 2 AA3 3 PHE A 191 PHE A 200 -1 O ASP A 192 N PHE A 72 SHEET 3 AA3 3 PHE A 109 THR A 115 -1 N GLU A 110 O GLN A 199 SHEET 1 AA4 3 LYS B 68 GLU B 73 0 SHEET 2 AA4 3 PHE B 191 PHE B 200 -1 O ASP B 192 N PHE B 72 SHEET 3 AA4 3 PHE B 109 THR B 115 -1 N GLU B 110 O GLN B 199 SHEET 1 AA5 3 LYS C 68 GLU C 73 0 SHEET 2 AA5 3 PHE C 191 PHE C 200 -1 O ASP C 192 N PHE C 72 SHEET 3 AA5 3 PHE C 109 THR C 115 -1 N GLU C 110 O GLN C 199 SHEET 1 AA6 3 VAL C 168 ASN C 169 0 SHEET 2 AA6 3 ILE C 80 GLY C 90 -1 N MET C 85 O VAL C 168 SHEET 3 AA6 3 LYS C 223 GLN C 232 -1 O GLN C 225 N ASN C 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000