HEADER OXIDOREDUCTASE 26-AUG-22 8AVN TITLE MUTANT OF SUPEROXIDE DISMUTASE SODFM1 FROM CPR PARCUBACTERIA TITLE 2 WOLFEBACTERIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS WOLFEBACTERIA BACTERIUM SOURCE 3 GW2011_GWB1_47_1; SOURCE 4 ORGANISM_TAXID: 1619007; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SUPEROXIDE DISMUTASE (SOD). OXIDOREDUCTASE. IRON. BACTERIAL. KEYWDS 2 METALLOENZYME., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BASLE,A.BARWINSKA-SENDRA,K.M.SENDRA,K.WALDRON REVDAT 5 07-FEB-24 8AVN 1 REMARK REVDAT 4 09-AUG-23 8AVN 1 REMARK HELIX LINK ATOM REVDAT 3 28-JUN-23 8AVN 1 COMPND SOURCE REMARK LINK REVDAT 3 2 1 ATOM REVDAT 2 24-MAY-23 8AVN 1 JRNL REVDAT 1 19-APR-23 8AVN 0 JRNL AUTH K.M.SENDRA,A.BARWINSKA-SENDRA,E.S.MACKENZIE,A.BASLE, JRNL AUTH 2 T.E.KEHL-FIE,K.J.WALDRON JRNL TITL AN ANCIENT METALLOENZYME EVOLVES THROUGH METAL PREFERENCE JRNL TITL 2 MODULATION. JRNL REF NAT ECOL EVOL V. 7 732 2023 JRNL REFN ISSN 2397-334X JRNL PMID 37037909 JRNL DOI 10.1038/S41559-023-02012-0 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 43245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.011 REMARK 3 FREE R VALUE TEST SET COUNT : 2167 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53600 REMARK 3 B22 (A**2) : 3.03500 REMARK 3 B33 (A**2) : -1.35500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3435 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3135 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4688 ; 1.659 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7247 ; 0.555 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 6.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ; 5.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;15.070 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 493 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4054 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 786 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 752 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 70 ; 0.239 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1722 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.110 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1624 ; 2.680 ; 2.922 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1623 ; 2.653 ; 2.919 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2028 ; 3.583 ; 5.254 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2029 ; 3.584 ; 5.255 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1811 ; 3.201 ; 3.269 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1812 ; 3.200 ; 3.270 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2655 ; 4.245 ; 5.839 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2656 ; 4.244 ; 5.839 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6570 ; 5.367 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 203 1 REMARK 3 1 A 2 A 203 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292125200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43267 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GV3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM SODIUM CHLORIDE, 100 MM SODIUM REMARK 280 ACETATE PH 5.0 AND 20 % W/V POLYETHYLENE GLYCOL 6000., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.85500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS B 2 O HOH B 403 1.59 REMARK 500 O HOH A 516 O HOH A 521 1.85 REMARK 500 O HOH A 481 O HOH A 505 1.86 REMARK 500 O GLY B 203 O HOH B 401 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 121 O HOH A 466 2554 1.51 REMARK 500 O MET A 155 OE1 GLU A 181 2544 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 62 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 5.37 -69.94 REMARK 500 LYS A 30 -63.42 -109.43 REMARK 500 TYR A 171 -5.35 -140.48 REMARK 500 GLN A 176 -127.60 45.17 REMARK 500 TYR B 171 -5.01 -141.67 REMARK 500 GLN B 176 -126.38 41.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 521 DISTANCE = 5.92 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 82 NE2 92.8 REMARK 620 3 ASP A 165 OD2 83.0 113.3 REMARK 620 4 HIS A 169 NE2 92.5 135.3 111.4 REMARK 620 5 HOH A 472 O 172.8 87.2 90.4 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 82 NE2 92.3 REMARK 620 3 ASP B 165 OD2 84.4 108.5 REMARK 620 4 HIS B 169 NE2 91.5 134.7 116.8 REMARK 620 5 HOH B 421 O 172.3 86.9 88.6 94.6 REMARK 620 N 1 2 3 4 DBREF1 8AVN A 1 203 UNP A0A0G1X6V3_9BACT DBREF2 8AVN A A0A0G1X6V3 1 203 DBREF1 8AVN B 1 203 UNP A0A0G1X6V3_9BACT DBREF2 8AVN B A0A0G1X6V3 1 203 SEQADV 8AVN GLN A 150 UNP A0A0G1X6V HIS 150 ENGINEERED MUTATION SEQADV 8AVN GLY A 163 UNP A0A0G1X6V VAL 163 ENGINEERED MUTATION SEQADV 8AVN GLN B 150 UNP A0A0G1X6V HIS 150 ENGINEERED MUTATION SEQADV 8AVN GLY B 163 UNP A0A0G1X6V VAL 163 ENGINEERED MUTATION SEQRES 1 A 203 MET LYS HIS GLU LEU PRO PRO LEU PRO TYR ALA TYR ASN SEQRES 2 A 203 ALA LEU GLU PRO PHE ILE ASP ALA LYS THR LEU GLU ILE SEQRES 3 A 203 HIS HIS THR LYS HIS HIS GLN SER TYR VAL ASP LYS LEU SEQRES 4 A 203 ASN ALA ALA LEU GLU LYS TYR PRO ASP LEU GLN ASP LYS SEQRES 5 A 203 THR VAL GLU GLU LEU ILE LYS SER LEU ASN GLU LEU PRO SEQRES 6 A 203 GLU GLU ILE ARG THR THR VAL ARG ASN ASN ALA GLY GLY SEQRES 7 A 203 HIS PHE SER HIS THR LEU TYR TRP ASN ILE MET ASN PRO SEQRES 8 A 203 ALA THR GLN GLU TYR ILE PRO GLU GLU LEU GLY ASN ALA SEQRES 9 A 203 LEU VAL GLU THR PHE GLY SER ILE ILE ALA PHE LYS GLU SEQRES 10 A 203 GLN PHE SER LYS ALA ALA ALA ASN ILE PHE GLY SER GLY SEQRES 11 A 203 TRP VAL TRP LEU ALA ALA ASP ALA ASN LYS LYS LEU LYS SEQRES 12 A 203 ILE VAL SER THR THR GLY GLN ASP ASN PRO LEU MET THR SEQRES 13 A 203 GLY ASP ALA PRO LEU MET GLY ILE ASP ILE TRP GLU HIS SEQRES 14 A 203 ALA TYR TYR LEU HIS TYR GLN ASN ARG ARG PRO GLU TYR SEQRES 15 A 203 ILE GLU ASN TRP TRP ASN VAL LEU ASP TRP LYS ALA VAL SEQRES 16 A 203 GLU GLU ARG TYR ASN ALA LEU GLY SEQRES 1 B 203 MET LYS HIS GLU LEU PRO PRO LEU PRO TYR ALA TYR ASN SEQRES 2 B 203 ALA LEU GLU PRO PHE ILE ASP ALA LYS THR LEU GLU ILE SEQRES 3 B 203 HIS HIS THR LYS HIS HIS GLN SER TYR VAL ASP LYS LEU SEQRES 4 B 203 ASN ALA ALA LEU GLU LYS TYR PRO ASP LEU GLN ASP LYS SEQRES 5 B 203 THR VAL GLU GLU LEU ILE LYS SER LEU ASN GLU LEU PRO SEQRES 6 B 203 GLU GLU ILE ARG THR THR VAL ARG ASN ASN ALA GLY GLY SEQRES 7 B 203 HIS PHE SER HIS THR LEU TYR TRP ASN ILE MET ASN PRO SEQRES 8 B 203 ALA THR GLN GLU TYR ILE PRO GLU GLU LEU GLY ASN ALA SEQRES 9 B 203 LEU VAL GLU THR PHE GLY SER ILE ILE ALA PHE LYS GLU SEQRES 10 B 203 GLN PHE SER LYS ALA ALA ALA ASN ILE PHE GLY SER GLY SEQRES 11 B 203 TRP VAL TRP LEU ALA ALA ASP ALA ASN LYS LYS LEU LYS SEQRES 12 B 203 ILE VAL SER THR THR GLY GLN ASP ASN PRO LEU MET THR SEQRES 13 B 203 GLY ASP ALA PRO LEU MET GLY ILE ASP ILE TRP GLU HIS SEQRES 14 B 203 ALA TYR TYR LEU HIS TYR GLN ASN ARG ARG PRO GLU TYR SEQRES 15 B 203 ILE GLU ASN TRP TRP ASN VAL LEU ASP TRP LYS ALA VAL SEQRES 16 B 203 GLU GLU ARG TYR ASN ALA LEU GLY HET MN A 301 1 HET MN B 301 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *193(H2 O) HELIX 1 AA1 ASP A 20 LYS A 30 1 11 HELIX 2 AA2 LYS A 30 TYR A 46 1 17 HELIX 3 AA3 PRO A 47 LYS A 52 5 6 HELIX 4 AA4 THR A 53 SER A 60 1 8 HELIX 5 AA5 LEU A 61 LEU A 64 5 4 HELIX 6 AA6 PRO A 65 ILE A 88 1 24 HELIX 7 AA7 PRO A 98 GLY A 110 1 13 HELIX 8 AA8 SER A 111 ASN A 125 1 15 HELIX 9 AA9 ASN A 152 GLY A 157 5 6 HELIX 10 AB1 TRP A 167 ALA A 170 5 4 HELIX 11 AB2 TYR A 171 GLN A 176 1 6 HELIX 12 AB3 ARG A 178 TRP A 187 1 10 HELIX 13 AB4 ASN A 188 LEU A 190 5 3 HELIX 14 AB5 ASP A 191 LEU A 202 1 12 HELIX 15 AB6 ASP B 20 LYS B 30 1 11 HELIX 16 AB7 LYS B 30 GLU B 44 1 15 HELIX 17 AB8 ASP B 48 LYS B 52 5 5 HELIX 18 AB9 THR B 53 SER B 60 1 8 HELIX 19 AC1 LEU B 61 LEU B 64 5 4 HELIX 20 AC2 PRO B 65 ILE B 88 1 24 HELIX 21 AC3 PRO B 98 GLY B 110 1 13 HELIX 22 AC4 SER B 111 ASN B 125 1 15 HELIX 23 AC5 ASN B 152 GLY B 157 5 6 HELIX 24 AC6 TRP B 167 ALA B 170 5 4 HELIX 25 AC7 TYR B 171 GLN B 176 1 6 HELIX 26 AC8 ARG B 178 TRP B 187 1 10 HELIX 27 AC9 ASN B 188 LEU B 190 5 3 HELIX 28 AD1 ASP B 191 LEU B 202 1 12 SHEET 1 AA1 3 LEU A 142 THR A 148 0 SHEET 2 AA1 3 GLY A 130 ALA A 136 -1 N TRP A 133 O VAL A 145 SHEET 3 AA1 3 ALA A 159 ASP A 165 -1 O LEU A 161 N LEU A 134 SHEET 1 AA2 3 LEU B 142 THR B 148 0 SHEET 2 AA2 3 GLY B 130 ALA B 136 -1 N TRP B 133 O VAL B 145 SHEET 3 AA2 3 ALA B 159 ASP B 165 -1 O LEU B 161 N LEU B 134 LINK NE2 HIS A 27 MN MN A 301 1555 1555 2.22 LINK NE2 HIS A 82 MN MN A 301 1555 1555 2.18 LINK OD2 ASP A 165 MN MN A 301 1555 1555 1.94 LINK NE2 HIS A 169 MN MN A 301 1555 1555 2.20 LINK MN MN A 301 O HOH A 472 1555 1555 2.26 LINK NE2 HIS B 27 MN MN B 301 1555 1555 2.23 LINK NE2 HIS B 82 MN MN B 301 1555 1555 2.24 LINK OD2 ASP B 165 MN MN B 301 1555 1555 1.81 LINK NE2 HIS B 169 MN MN B 301 1555 1555 2.16 LINK MN MN B 301 O HOH B 421 1555 1555 2.20 CISPEP 1 GLU A 16 PRO A 17 0 -3.15 CISPEP 2 GLU B 16 PRO B 17 0 -2.63 CRYST1 46.490 69.710 58.010 90.00 100.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021510 0.000000 0.003886 0.00000 SCALE2 0.000000 0.014345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017517 0.00000