HEADER ISOMERASE 29-AUG-22 8AW8 TITLE XYLOSE ISOMERASE IN 70% RELATIVE HUMIDITY ENVIRONMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929; SOURCE 4 GENE: XYLA; SOURCE 5 EXPRESSION_SYSTEM: STREPTOMYCES RUBIGINOSUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1929 KEYWDS XYLOSE ISOMERASE, GLUCOSE ISOMERASE, HUMIDITY, SPACE GROUP CHANGE, KEYWDS 2 UNIT CELL CHANGE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MEHRABI,S.SUNG,D.VON STETTEN,A.PRESTER,C.E.HATTON,S.KLEINE-DOEPKE, AUTHOR 2 A.BERKES,G.GORE,J.P.LEIMKOHL,H.SCHIKORA,M.KOLLEWE,H.ROHDE, AUTHOR 3 M.WILMANNS,F.TELLKAMP,E.C.SCHULZ REVDAT 2 07-FEB-24 8AW8 1 REMARK REVDAT 1 24-MAY-23 8AW8 0 JRNL AUTH P.MEHRABI,S.SUNG,D.VON STETTEN,A.PRESTER,C.E.HATTON, JRNL AUTH 2 S.KLEINE-DOPKE,A.BERKES,G.GORE,J.P.LEIMKOHL,H.SCHIKORA, JRNL AUTH 3 M.KOLLEWE,H.ROHDE,M.WILMANNS,F.TELLKAMP,E.C.SCHULZ JRNL TITL MILLISECOND CRYO-TRAPPING BY THE SPITROBOT CRYSTAL PLUNGER JRNL TITL 2 SIMPLIFIES TIME-RESOLVED CRYSTALLOGRAPHY. JRNL REF NAT COMMUN V. 14 2365 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37185266 JRNL DOI 10.1038/S41467-023-37834-W REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.9 REMARK 3 NUMBER OF REFLECTIONS : 60293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.8300 - 4.5800 1.00 4454 252 0.1632 0.2008 REMARK 3 2 4.5800 - 3.6300 0.78 3354 199 0.1348 0.1651 REMARK 3 3 3.6300 - 3.1700 0.85 3602 222 0.1471 0.1668 REMARK 3 4 3.1700 - 2.8800 1.00 4273 205 0.1572 0.1843 REMARK 3 5 2.8800 - 2.7100 0.99 3425 171 0.1578 0.2043 REMARK 3 6 2.6400 - 2.5200 1.00 3383 154 0.1612 0.1993 REMARK 3 7 2.5200 - 2.3900 1.00 4229 203 0.1607 0.1823 REMARK 3 8 2.3900 - 2.2900 1.00 4179 215 0.1539 0.1909 REMARK 3 9 2.2900 - 2.2000 0.41 1701 97 0.1659 0.1697 REMARK 3 10 2.2000 - 2.1200 1.00 4173 220 0.1478 0.1876 REMARK 3 11 2.1200 - 2.1000 1.00 1552 114 0.1649 0.2479 REMARK 3 12 2.0500 - 2.0000 1.00 3612 196 0.1609 0.1990 REMARK 3 13 2.0000 - 1.9800 0.99 1755 98 0.1815 0.1996 REMARK 3 14 1.8700 - 1.8600 0.86 842 38 0.1987 0.2697 REMARK 3 15 1.8600 - 1.8200 0.83 3465 186 0.2090 0.2846 REMARK 3 16 1.8200 - 1.7800 0.78 3202 186 0.2092 0.2675 REMARK 3 17 1.7800 - 1.7500 0.70 2975 137 0.2118 0.2445 REMARK 3 18 1.7500 - 1.7400 0.61 625 35 0.2356 0.2564 REMARK 3 19 1.7100 - 1.6900 0.34 1045 39 0.2163 0.2520 REMARK 3 20 1.6900 - 1.6600 0.20 847 47 0.2199 0.2383 REMARK 3 21 1.6600 - 1.6300 0.13 564 22 0.2074 0.3159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.152 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.953 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6284 REMARK 3 ANGLE : 1.054 8508 REMARK 3 CHIRALITY : 0.054 874 REMARK 3 PLANARITY : 0.012 1160 REMARK 3 DIHEDRAL : 5.412 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292125229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60298 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 52.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 61.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6RNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (W/V) PEG3350, 200 MM LITHIUM REMARK 280 SULFATE AND 10 MM HEPES/NAOH, PH 7.5, BATCH MODE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.41300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.15350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.41300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.15350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -168.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.30700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 65 O HOH B 501 1.90 REMARK 500 OD1 ASP B 352 O HOH B 502 1.97 REMARK 500 O HOH A 671 O HOH A 713 2.00 REMARK 500 O HOH A 726 O HOH A 732 2.02 REMARK 500 O HOH A 564 O HOH A 700 2.02 REMARK 500 NH2 ARG A 109 O HOH A 501 2.04 REMARK 500 O HOH A 729 O HOH A 733 2.07 REMARK 500 O HOH B 692 O HOH B 698 2.11 REMARK 500 O HOH A 519 O HOH A 680 2.11 REMARK 500 NE ARG A 177 O HOH A 502 2.15 REMARK 500 OD2 ASP B 28 O HOH B 503 2.17 REMARK 500 OE2 GLU B 167 O HOH B 504 2.19 REMARK 500 O HOH B 690 O HOH B 699 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 297 NH1 ARG A 374 2565 1.94 REMARK 500 OE2 GLU A 67 NH1 ARG A 354 1655 2.06 REMARK 500 O HOH B 591 O HOH B 673 4554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 374 CG - CD - NE ANGL. DEV. = -18.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -72.00 -82.47 REMARK 500 ARG A 76 -72.33 -12.04 REMARK 500 PHE A 94 -22.49 -145.19 REMARK 500 GLU A 186 112.07 73.32 REMARK 500 ASN A 247 -162.38 -166.90 REMARK 500 LYS A 253 -164.78 -165.70 REMARK 500 GLN A 327 -68.40 -26.65 REMARK 500 GLN A 327 -68.52 -26.65 REMARK 500 PHE A 357 -71.60 -155.98 REMARK 500 THR B 17 -71.28 -81.04 REMARK 500 MET B 84 140.46 -25.74 REMARK 500 ASP B 175 60.44 -113.15 REMARK 500 GLU B 186 110.92 74.69 REMARK 500 ASN B 247 -162.43 -167.34 REMARK 500 LYS B 253 -169.23 -171.25 REMARK 500 ALA B 343 62.97 -151.66 REMARK 500 PHE B 357 -67.85 -157.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 735 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 GLU A 217 OE1 105.5 REMARK 620 3 ASP A 245 OD2 105.5 110.1 REMARK 620 4 ASP A 287 OD2 142.2 92.5 98.7 REMARK 620 5 GOL A 403 O2 83.2 153.3 91.0 67.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE2 REMARK 620 2 HIS A 220 NE2 79.3 REMARK 620 3 ASP A 255 OD1 104.5 91.7 REMARK 620 4 ASP A 255 OD2 159.9 92.7 56.9 REMARK 620 5 ASP A 257 OD1 88.9 166.1 84.1 96.1 REMARK 620 6 HOH A 661 O 104.4 96.1 151.0 94.7 93.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 181 OE2 REMARK 620 2 GLU B 217 OE1 98.9 REMARK 620 3 ASP B 245 OD2 99.0 107.2 REMARK 620 4 ASP B 287 OD2 147.8 94.1 105.0 REMARK 620 5 GOL B 403 O2 83.7 156.5 95.4 73.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 217 OE2 REMARK 620 2 HIS B 220 NE2 79.2 REMARK 620 3 ASP B 255 OD1 103.9 93.1 REMARK 620 4 ASP B 255 OD2 159.7 93.6 57.2 REMARK 620 5 ASP B 257 OD1 89.7 168.1 85.2 95.4 REMARK 620 6 HOH B 638 O 106.9 96.0 149.0 92.6 91.4 REMARK 620 N 1 2 3 4 5 DBREF 8AW8 A 1 388 UNP P24300 XYLA_STRRU 1 388 DBREF 8AW8 B 1 388 UNP P24300 XYLA_STRRU 1 388 SEQRES 1 A 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY SEQRES 1 B 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 B 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 B 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 B 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 B 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 B 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 B 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 B 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 B 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 B 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 B 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 B 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 B 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 B 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 B 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 B 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 B 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 B 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 B 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 B 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 B 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 B 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 B 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 B 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 B 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 B 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 B 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 B 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 B 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 B 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET MG A 401 1 HET MN A 402 1 HET GOL A 403 6 HET MG B 401 1 HET MN B 402 1 HET GOL B 403 6 HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 MN 2(MN 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *438(H2 O) HELIX 1 AA1 THR A 6 ASP A 9 5 4 HELIX 2 AA2 LEU A 15 GLY A 19 1 5 HELIX 3 AA3 ASP A 35 GLY A 47 1 13 HELIX 4 AA4 ASP A 55 ILE A 59 1 5 HELIX 5 AA5 SER A 64 GLY A 83 1 20 HELIX 6 AA6 HIS A 96 LYS A 100 5 5 HELIX 7 AA7 ASP A 108 LEU A 129 1 22 HELIX 8 AA8 SER A 145 LYS A 149 5 5 HELIX 9 AA9 ASP A 150 GLY A 173 1 24 HELIX 10 AB1 THR A 195 GLU A 204 1 10 HELIX 11 AB2 ARG A 208 GLU A 210 5 3 HELIX 12 AB3 GLU A 217 MET A 223 1 7 HELIX 13 AB4 ASN A 227 ALA A 238 1 12 HELIX 14 AB5 ASP A 264 ALA A 278 1 15 HELIX 15 AB6 ASP A 295 ASP A 323 1 29 HELIX 16 AB7 ASP A 323 SER A 333 1 11 HELIX 17 AB8 ARG A 334 ALA A 339 1 6 HELIX 18 AB9 GLY A 346 ASP A 352 1 7 HELIX 19 AC1 ASP A 353 PHE A 357 5 5 HELIX 20 AC2 ASP A 361 ALA A 367 1 7 HELIX 21 AC3 ALA A 371 LEU A 384 1 14 HELIX 22 AC4 THR B 6 ASP B 9 5 4 HELIX 23 AC5 LEU B 15 GLY B 19 1 5 HELIX 24 AC6 ASP B 35 LEU B 46 1 12 HELIX 25 AC7 ASP B 55 ILE B 59 1 5 HELIX 26 AC8 SER B 64 GLY B 83 1 20 HELIX 27 AC9 HIS B 96 LYS B 100 5 5 HELIX 28 AD1 ASP B 108 LEU B 129 1 22 HELIX 29 AD2 SER B 145 LYS B 149 5 5 HELIX 30 AD3 ASP B 150 GLY B 173 1 24 HELIX 31 AD4 THR B 195 GLU B 204 1 10 HELIX 32 AD5 ARG B 208 GLU B 210 5 3 HELIX 33 AD6 GLU B 217 MET B 223 1 7 HELIX 34 AD7 ASN B 227 ALA B 238 1 12 HELIX 35 AD8 ASP B 264 GLY B 279 1 16 HELIX 36 AD9 ASP B 295 ASP B 323 1 29 HELIX 37 AE1 ASP B 323 SER B 333 1 11 HELIX 38 AE2 ARG B 334 ALA B 339 1 6 HELIX 39 AE3 GLY B 346 ASP B 353 1 8 HELIX 40 AE4 ARG B 354 PHE B 357 5 4 HELIX 41 AE5 ASP B 361 ARG B 368 1 8 HELIX 42 AE6 ALA B 371 GLY B 385 1 15 SHEET 1 AA1 8 TYR A 212 VAL A 214 0 SHEET 2 AA1 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 AA1 8 THR A 133 ALA A 136 1 N TYR A 134 O ARG A 177 SHEET 4 AA1 8 LYS A 85 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 AA1 8 GLY A 50 HIS A 54 1 N VAL A 51 O LYS A 85 SHEET 6 AA1 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 AA1 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 AA1 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 AA2 2 GLY A 142 ALA A 143 0 SHEET 2 AA2 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 SHEET 1 AA3 8 TYR B 212 VAL B 214 0 SHEET 2 AA3 8 ARG B 177 ILE B 180 1 N ILE B 180 O GLY B 213 SHEET 3 AA3 8 THR B 133 ALA B 136 1 N TYR B 134 O ARG B 177 SHEET 4 AA3 8 MET B 88 THR B 90 1 N ALA B 89 O VAL B 135 SHEET 5 AA3 8 GLY B 50 HIS B 54 1 N PHE B 53 O THR B 90 SHEET 6 AA3 8 PHE B 11 GLY B 14 1 N PHE B 13 O THR B 52 SHEET 7 AA3 8 ARG B 284 PHE B 286 1 O PHE B 286 N THR B 12 SHEET 8 AA3 8 ASP B 245 LEU B 246 1 N LEU B 246 O HIS B 285 SHEET 1 AA4 2 GLY B 142 ALA B 143 0 SHEET 2 AA4 2 ASP B 190 ILE B 191 -1 O ASP B 190 N ALA B 143 LINK OE2 GLU A 181 MG MG A 401 1555 1555 1.83 LINK OE1 GLU A 217 MG MG A 401 1555 1555 2.11 LINK OE2 GLU A 217 MN MN A 402 1555 1555 2.07 LINK NE2 HIS A 220 MN MN A 402 1555 1555 2.39 LINK OD2 ASP A 245 MG MG A 401 1555 1555 2.21 LINK OD1 ASP A 255 MN MN A 402 1555 1555 2.36 LINK OD2 ASP A 255 MN MN A 402 1555 1555 2.22 LINK OD1 ASP A 257 MN MN A 402 1555 1555 2.23 LINK OD2 ASP A 287 MG MG A 401 1555 1555 1.98 LINK MG MG A 401 O2 GOL A 403 1555 1555 2.87 LINK MN MN A 402 O HOH A 661 1555 1555 2.19 LINK OE2 GLU B 181 MG MG B 401 1555 1555 1.97 LINK OE1 GLU B 217 MG MG B 401 1555 1555 2.17 LINK OE2 GLU B 217 MN MN B 402 1555 1555 2.04 LINK NE2 HIS B 220 MN MN B 402 1555 1555 2.40 LINK OD2 ASP B 245 MG MG B 401 1555 1555 2.14 LINK OD1 ASP B 255 MN MN B 402 1555 1555 2.35 LINK OD2 ASP B 255 MN MN B 402 1555 1555 2.26 LINK OD1 ASP B 257 MN MN B 402 1555 1555 2.27 LINK OD2 ASP B 287 MG MG B 401 1555 1555 1.82 LINK MG MG B 401 O2 GOL B 403 1555 1555 2.64 LINK MN MN B 402 O HOH B 638 1555 1555 2.17 CISPEP 1 GLU A 186 PRO A 187 0 12.75 CISPEP 2 GLU B 186 PRO B 187 0 11.59 CRYST1 82.826 96.307 97.757 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012074 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010229 0.00000