HEADER IMMUNE SYSTEM 29-AUG-22 8AWH TITLE LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH 4-(4-BENZYLPHENYL)-SELENAZOL- TITLE 2 2-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE,LEUKOTRIENE A(4) HYDROLASE,TRIPEPTIDE COMPND 5 AMINOPEPTIDASE LTA4H; COMPND 6 EC: 3.3.2.6,3.4.11.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4H, LTA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEUKOTRIENE B4, COMPLEX, INHIBITOR, INFLAMMATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.TEDER,J.Z.HAEGGSTROM REVDAT 3 07-FEB-24 8AWH 1 REMARK REVDAT 2 10-MAY-23 8AWH 1 JRNL REVDAT 1 03-MAY-23 8AWH 0 JRNL AUTH T.TEDER,S.KONIG,R.SINGH,B.SAMUELSSON,O.WERZ,U.GARSCHA, JRNL AUTH 2 J.Z.HAEGGSTROM JRNL TITL MODULATION OF THE 5-LIPOXYGENASE PATHWAY BY JRNL TITL 2 CHALCOGEN-CONTAINING INHIBITORS OF LEUKOTRIENE A 4 JRNL TITL 3 HYDROLASE. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 37108702 JRNL DOI 10.3390/IJMS24087539 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.1 REMARK 3 NUMBER OF REFLECTIONS : 72951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 579 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5256 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4950 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7165 ; 1.572 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11461 ; 1.422 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;33.861 ;23.047 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 910 ;13.356 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 674 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6190 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1204 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8AWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.415 REMARK 200 RESOLUTION RANGE LOW (A) : 43.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.19900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.91700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.838 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4L2L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 100 MM SODIUM ACETATE, 5 REMARK 280 MM YTTERBIUM CHLORIDE, 100 MM IMIDAZOLE PH 6.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.51100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.50350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.75950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.50350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.51100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.75950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 182 O HOH A 801 1.43 REMARK 500 O HOH A 1166 O HOH A 1375 1.82 REMARK 500 O HOH A 1207 O HOH A 1291 1.85 REMARK 500 O HOH A 1153 O HOH A 1283 1.88 REMARK 500 O HOH A 809 O HOH A 810 1.97 REMARK 500 OE2 GLU A 560 O HOH A 802 1.97 REMARK 500 OD1 ASP A 493 O HOH A 803 2.02 REMARK 500 NZ LYS A 546 O HOH A 804 2.08 REMARK 500 O HOH A 885 O HOH A 1301 2.08 REMARK 500 O HOH A 806 O HOH A 949 2.09 REMARK 500 O HOH A 861 O HOH A 1228 2.10 REMARK 500 O HOH A 1187 O HOH A 1322 2.13 REMARK 500 O HOH A 1020 O HOH A 1279 2.15 REMARK 500 O HOH A 1003 O HOH A 1171 2.15 REMARK 500 O HOH A 846 O HOH A 1344 2.15 REMARK 500 O HOH A 939 O HOH A 1278 2.16 REMARK 500 O HOH A 854 O HOH A 1336 2.17 REMARK 500 O HOH A 1071 O HOH A 1190 2.17 REMARK 500 O HOH A 981 O HOH A 1262 2.18 REMARK 500 O HOH A 1272 O HOH A 1273 2.18 REMARK 500 OG SER A 222 O HOH A 805 2.19 REMARK 500 O HOH A 1242 O HOH A 1361 2.19 REMARK 500 O HOH A 949 O HOH A 1180 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 63.69 -112.43 REMARK 500 SER A 80 -130.56 53.75 REMARK 500 ASN A 97 -3.88 80.88 REMARK 500 ASN A 97 -2.25 80.88 REMARK 500 SER A 112 123.59 -39.49 REMARK 500 ASP A 183 105.52 -169.32 REMARK 500 GLU A 271 45.89 -81.11 REMARK 500 GLU A 271 45.89 -81.22 REMARK 500 CYS A 274 -11.60 73.17 REMARK 500 LEU A 275 82.17 -151.97 REMARK 500 PHE A 432 39.07 -96.98 REMARK 500 LYS A 546 34.84 70.52 REMARK 500 LYS A 546 32.60 72.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 702 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD1 REMARK 620 2 ASP A 47 OD2 52.8 REMARK 620 3 ASP A 481 OD1 26.7 40.0 REMARK 620 4 ASP A 481 OD2 26.7 39.7 0.3 REMARK 620 5 ACT A 706 O 125.6 79.9 99.7 99.6 REMARK 620 6 ACT A 706 OXT 118.1 70.7 110.5 110.2 54.4 REMARK 620 7 HOH A 835 O 139.4 144.3 165.9 166.0 94.3 77.3 REMARK 620 8 HOH A 928 O 74.5 127.3 92.1 92.3 142.6 150.2 77.0 REMARK 620 9 HOH A 995 O 72.3 81.3 94.0 93.9 130.8 76.5 76.2 82.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 703 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 175 OD1 REMARK 620 2 HOH A 846 O 151.3 REMARK 620 3 HOH A1034 O 92.9 74.8 REMARK 620 4 HOH A1137 O 70.1 136.0 136.1 REMARK 620 5 HOH A1199 O 68.9 89.8 107.5 103.5 REMARK 620 6 HOH A1344 O 165.5 42.3 98.5 95.5 115.4 REMARK 620 7 HOH A1365 O 106.3 94.3 154.6 43.5 95.2 60.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 102.2 REMARK 620 3 GLU A 318 OE1 98.6 101.7 REMARK 620 4 ACT A 705 O 89.1 91.3 163.0 REMARK 620 5 ACT A 705 OXT 112.8 132.6 103.5 59.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 704 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 426 OD1 REMARK 620 2 ASP A 426 OD2 43.1 REMARK 620 3 HOH A 810 O 45.3 87.3 REMARK 620 4 HOH A 816 O 79.5 91.7 61.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 704 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD1 REMARK 620 2 ACT A 711 OXT 21.6 REMARK 620 3 HOH A 809 O 18.3 3.8 REMARK 620 4 HOH A 810 O 18.0 3.8 1.0 REMARK 620 5 HOH A 924 O 20.7 2.7 4.9 4.3 REMARK 620 6 HOH A1005 O 19.9 2.9 1.5 2.2 4.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L2L RELATED DB: PDB DBREF 8AWH A 1 610 UNP P09960 LKHA4_HUMAN 2 611 SEQADV 8AWH MET A -6 UNP P09960 INITIATING METHIONINE SEQADV 8AWH HIS A -5 UNP P09960 EXPRESSION TAG SEQADV 8AWH HIS A -4 UNP P09960 EXPRESSION TAG SEQADV 8AWH HIS A -3 UNP P09960 EXPRESSION TAG SEQADV 8AWH HIS A -2 UNP P09960 EXPRESSION TAG SEQADV 8AWH HIS A -1 UNP P09960 EXPRESSION TAG SEQADV 8AWH HIS A 0 UNP P09960 EXPRESSION TAG SEQRES 1 A 617 MET HIS HIS HIS HIS HIS HIS PRO GLU ILE VAL ASP THR SEQRES 2 A 617 CYS SER LEU ALA SER PRO ALA SER VAL CYS ARG THR LYS SEQRES 3 A 617 HIS LEU HIS LEU ARG CYS SER VAL ASP PHE THR ARG ARG SEQRES 4 A 617 THR LEU THR GLY THR ALA ALA LEU THR VAL GLN SER GLN SEQRES 5 A 617 GLU ASP ASN LEU ARG SER LEU VAL LEU ASP THR LYS ASP SEQRES 6 A 617 LEU THR ILE GLU LYS VAL VAL ILE ASN GLY GLN GLU VAL SEQRES 7 A 617 LYS TYR ALA LEU GLY GLU ARG GLN SER TYR LYS GLY SER SEQRES 8 A 617 PRO MET GLU ILE SER LEU PRO ILE ALA LEU SER LYS ASN SEQRES 9 A 617 GLN GLU ILE VAL ILE GLU ILE SER PHE GLU THR SER PRO SEQRES 10 A 617 LYS SER SER ALA LEU GLN TRP LEU THR PRO GLU GLN THR SEQRES 11 A 617 SER GLY LYS GLU HIS PRO TYR LEU PHE SER GLN CYS GLN SEQRES 12 A 617 ALA ILE HIS CYS ARG ALA ILE LEU PRO CYS GLN ASP THR SEQRES 13 A 617 PRO SER VAL LYS LEU THR TYR THR ALA GLU VAL SER VAL SEQRES 14 A 617 PRO LYS GLU LEU VAL ALA LEU MET SER ALA ILE ARG ASP SEQRES 15 A 617 GLY GLU THR PRO ASP PRO GLU ASP PRO SER ARG LYS ILE SEQRES 16 A 617 TYR LYS PHE ILE GLN LYS VAL PRO ILE PRO CYS TYR LEU SEQRES 17 A 617 ILE ALA LEU VAL VAL GLY ALA LEU GLU SER ARG GLN ILE SEQRES 18 A 617 GLY PRO ARG THR LEU VAL TRP SER GLU LYS GLU GLN VAL SEQRES 19 A 617 GLU LYS SER ALA TYR GLU PHE SER GLU THR GLU SER MET SEQRES 20 A 617 LEU LYS ILE ALA GLU ASP LEU GLY GLY PRO TYR VAL TRP SEQRES 21 A 617 GLY GLN TYR ASP LEU LEU VAL LEU PRO PRO SER PHE PRO SEQRES 22 A 617 TYR GLY GLY MET GLU ASN PRO CYS LEU THR PHE VAL THR SEQRES 23 A 617 PRO THR LEU LEU ALA GLY ASP LYS SER LEU SER ASN VAL SEQRES 24 A 617 ILE ALA HIS GLU ILE SER HIS SER TRP THR GLY ASN LEU SEQRES 25 A 617 VAL THR ASN LYS THR TRP ASP HIS PHE TRP LEU ASN GLU SEQRES 26 A 617 GLY HIS THR VAL TYR LEU GLU ARG HIS ILE CYS GLY ARG SEQRES 27 A 617 LEU PHE GLY GLU LYS PHE ARG HIS PHE ASN ALA LEU GLY SEQRES 28 A 617 GLY TRP GLY GLU LEU GLN ASN SER VAL LYS THR PHE GLY SEQRES 29 A 617 GLU THR HIS PRO PHE THR LYS LEU VAL VAL ASP LEU THR SEQRES 30 A 617 ASP ILE ASP PRO ASP VAL ALA TYR SER SER VAL PRO TYR SEQRES 31 A 617 GLU LYS GLY PHE ALA LEU LEU PHE TYR LEU GLU GLN LEU SEQRES 32 A 617 LEU GLY GLY PRO GLU ILE PHE LEU GLY PHE LEU LYS ALA SEQRES 33 A 617 TYR VAL GLU LYS PHE SER TYR LYS SER ILE THR THR ASP SEQRES 34 A 617 ASP TRP LYS ASP PHE LEU TYR SER TYR PHE LYS ASP LYS SEQRES 35 A 617 VAL ASP VAL LEU ASN GLN VAL ASP TRP ASN ALA TRP LEU SEQRES 36 A 617 TYR SER PRO GLY LEU PRO PRO ILE LYS PRO ASN TYR ASP SEQRES 37 A 617 MET THR LEU THR ASN ALA CYS ILE ALA LEU SER GLN ARG SEQRES 38 A 617 TRP ILE THR ALA LYS GLU ASP ASP LEU ASN SER PHE ASN SEQRES 39 A 617 ALA THR ASP LEU LYS ASP LEU SER SER HIS GLN LEU ASN SEQRES 40 A 617 GLU PHE LEU ALA GLN THR LEU GLN ARG ALA PRO LEU PRO SEQRES 41 A 617 LEU GLY HIS ILE LYS ARG MET GLN GLU VAL TYR ASN PHE SEQRES 42 A 617 ASN ALA ILE ASN ASN SER GLU ILE ARG PHE ARG TRP LEU SEQRES 43 A 617 ARG LEU CYS ILE GLN SER LYS TRP GLU ASP ALA ILE PRO SEQRES 44 A 617 LEU ALA LEU LYS MET ALA THR GLU GLN GLY ARG MET LYS SEQRES 45 A 617 PHE THR ARG PRO LEU PHE LYS ASP LEU ALA ALA PHE ASP SEQRES 46 A 617 LYS SER HIS ASP GLN ALA VAL ARG THR TYR GLN GLU HIS SEQRES 47 A 617 LYS ALA SER MET HIS PRO VAL THR ALA MET LEU VAL GLY SEQRES 48 A 617 LYS ASP LEU LYS VAL ASP HET ZN A 701 1 HET YB A 702 1 HET YB A 703 1 HET YB A 704 2 HET ACT A 705 4 HET ACT A 706 4 HET ACT A 707 4 HET IMD A 708 5 HET IMD A 709 5 HET OD6 A 710 38 HET ACT A 711 4 HET GOL A 712 6 HET GOL A 713 6 HETNAM ZN ZINC ION HETNAM YB YTTERBIUM (III) ION HETNAM ACT ACETATE ION HETNAM IMD IMIDAZOLE HETNAM OD6 4-[4-(PHENYLMETHYL)PHENYL]-1,3-SELENAZOL-2-AMINE HETNAM GOL GLYCEROL HETSYN OD6 4-(4-BENZYLPHENYL)-SELENAZOL-2-AMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 YB 3(YB 3+) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 9 IMD 2(C3 H5 N2 1+) FORMUL 11 OD6 C16 H14 N2 SE FORMUL 13 GOL 2(C3 H8 O3) FORMUL 15 HOH *579(H2 O) HELIX 1 AA1 GLN A 79 GLY A 83 5 5 HELIX 2 AA2 THR A 119 THR A 123 5 5 HELIX 3 AA3 HIS A 139 ILE A 143 5 5 HELIX 4 AA4 PRO A 198 ILE A 202 5 5 HELIX 5 AA5 GLU A 223 GLU A 225 5 3 HELIX 6 AA6 GLN A 226 PHE A 234 1 9 HELIX 7 AA7 GLU A 236 GLY A 249 1 14 HELIX 8 AA8 PRO A 280 LEU A 283 5 4 HELIX 9 AA9 SER A 290 HIS A 299 1 10 HELIX 10 AB1 THR A 310 HIS A 313 5 4 HELIX 11 AB2 PHE A 314 GLY A 334 1 21 HELIX 12 AB3 GLY A 334 GLY A 357 1 24 HELIX 13 AB4 HIS A 360 LYS A 364 5 5 HELIX 14 AB5 ASP A 373 TYR A 378 1 6 HELIX 15 AB6 SER A 380 GLY A 398 1 19 HELIX 16 AB7 GLY A 399 SER A 415 1 17 HELIX 17 AB8 THR A 420 PHE A 432 1 13 HELIX 18 AB9 LYS A 435 ASN A 440 1 6 HELIX 19 AC1 ASP A 443 SER A 450 1 8 HELIX 20 AC2 THR A 465 ALA A 478 1 14 HELIX 21 AC3 LYS A 479 PHE A 486 5 8 HELIX 22 AC4 ASN A 487 LYS A 492 5 6 HELIX 23 AC5 SER A 495 GLN A 508 1 14 HELIX 24 AC6 PRO A 513 ASN A 525 1 13 HELIX 25 AC7 PHE A 526 ILE A 529 5 4 HELIX 26 AC8 ASN A 531 SER A 545 1 15 HELIX 27 AC9 TRP A 547 ASP A 549 5 3 HELIX 28 AD1 ALA A 550 GLN A 561 1 12 HELIX 29 AD2 ARG A 563 PHE A 577 1 15 HELIX 30 AD3 PHE A 577 LYS A 592 1 16 HELIX 31 AD4 ALA A 593 MET A 595 5 3 HELIX 32 AD5 HIS A 596 LYS A 608 1 13 SHEET 1 AA1 8 GLN A 69 GLU A 70 0 SHEET 2 AA1 8 LEU A 59 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 AA1 8 GLU A 99 THR A 108 -1 O GLU A 107 N THR A 60 SHEET 4 AA1 8 THR A 33 SER A 44 -1 N LEU A 40 O ILE A 102 SHEET 5 AA1 8 CYS A 16 ASP A 28 -1 N LYS A 19 O THR A 41 SHEET 6 AA1 8 LEU A 154 PRO A 163 1 O SER A 161 N CYS A 25 SHEET 7 AA1 8 ASP A 183 ILE A 197 -1 O GLN A 193 N TYR A 156 SHEET 8 AA1 8 ILE A 173 ASP A 180 -1 N THR A 178 O ILE A 188 SHEET 1 AA2 3 LEU A 49 THR A 56 0 SHEET 2 AA2 3 SER A 84 LEU A 94 -1 O ILE A 88 N LEU A 52 SHEET 3 AA2 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 AA3 4 LEU A 115 LEU A 118 0 SHEET 2 AA3 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 AA3 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 AA3 4 VAL A 167 MET A 170 -1 N VAL A 167 O GLY A 207 SHEET 1 AA4 5 GLU A 210 GLY A 215 0 SHEET 2 AA4 5 THR A 218 SER A 222 -1 O VAL A 220 N ARG A 212 SHEET 3 AA4 5 ASP A 257 VAL A 260 1 O VAL A 260 N TRP A 221 SHEET 4 AA4 5 LEU A 275 VAL A 278 1 O VAL A 278 N LEU A 259 SHEET 5 AA4 5 GLY A 269 MET A 270 -1 N MET A 270 O PHE A 277 SHEET 1 AA5 2 VAL A 306 ASN A 308 0 SHEET 2 AA5 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK OD1 ASP A 47 YB YB A 702 1555 1555 2.41 LINK OD2 ASP A 47 YB YB A 702 1555 1555 2.52 LINK OD1 ASP A 175 YB YB A 703 1555 1555 2.27 LINK NE2 HIS A 295 ZN ZN A 701 1555 1555 2.07 LINK NE2 HIS A 299 ZN ZN A 701 1555 1555 2.09 LINK OE1 GLU A 318 ZN ZN A 701 1555 1555 2.01 LINK OD1BASP A 426 YB B YB A 704 1555 1555 3.12 LINK OD2BASP A 426 YB B YB A 704 1555 1555 2.62 LINK OD1 ASP A 481 YB YB A 702 1555 1565 2.33 LINK OD2 ASP A 481 YB YB A 702 1555 1565 2.39 LINK OD1 ASP A 610 YB A YB A 704 1555 2454 2.33 LINK ZN ZN A 701 O ACT A 705 1555 1555 2.51 LINK ZN ZN A 701 OXT ACT A 705 1555 1555 1.74 LINK YB YB A 702 O ACT A 706 1555 1555 2.41 LINK YB YB A 702 OXT ACT A 706 1555 1555 2.52 LINK YB YB A 702 O HOH A 835 1555 1545 2.39 LINK YB YB A 702 O HOH A 928 1555 1545 2.42 LINK YB YB A 702 O HOH A 995 1555 1555 2.21 LINK YB YB A 703 O HOH A 846 1555 4545 3.20 LINK YB YB A 703 O HOH A1034 1555 4545 2.44 LINK YB YB A 703 O HOH A1137 1555 1555 3.11 LINK YB YB A 703 O HOH A1199 1555 1555 2.99 LINK YB YB A 703 O HOH A1344 1555 4545 2.35 LINK YB YB A 703 O HOH A1365 1555 1555 3.28 LINK YB A YB A 704 OXT ACT A 711 1555 1555 2.55 LINK YB A YB A 704 O HOH A 809 1555 1555 3.49 LINK YB A YB A 704 O HOH A 810 1555 1555 2.08 LINK YB B YB A 704 O HOH A 810 1555 1555 2.86 LINK YB B YB A 704 O HOH A 816 1555 1555 2.35 LINK YB A YB A 704 O HOH A 924 1555 1555 2.43 LINK YB A YB A 704 O HOH A1005 1555 2455 2.18 CISPEP 1 GLN A 136 ALA A 137 0 -0.64 CISPEP 2 ALA A 510 PRO A 511 0 2.20 CRYST1 77.022 87.519 99.007 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012983 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010100 0.00000