HEADER ISOMERASE 30-AUG-22 8AWY TITLE MILLISECOND CRYO-TRAPPING BY THE SPITROBOT CRYSTAL PLUNGER, SERIAL TITLE 2 MEASUREMENT XYLOSE ISOMERASE WITH 2,3-BUTANEDIOL AT 50MS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929; SOURCE 4 GENE: XYLA; SOURCE 5 EXPRESSION_SYSTEM: STREPTOMYCES RUBIGINOSUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1929 KEYWDS XYLOSE ISOMERASE, GLUCOSE ISOMERASE, HUMIDITY SERIAL MEASUREMENT, KEYWDS 2 TIME-RESOLVED CRYSTALLOGRAPHY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MEHRABI,S.SUNG,D.VON STETTEN,A.PRESTER,C.E.HATTON,S.KLEINE-DOEPKE, AUTHOR 2 A.BERKES,G.GORE,J.P.LEIMKOHL,H.SCHIKORA,M.KOLLEWE,H.ROHDE, AUTHOR 3 M.WILMANNS,F.TELLKAMP,E.C.SCHULZ REVDAT 2 07-FEB-24 8AWY 1 REMARK REVDAT 1 24-MAY-23 8AWY 0 JRNL AUTH P.MEHRABI,S.SUNG,D.VON STETTEN,A.PRESTER,C.E.HATTON, JRNL AUTH 2 S.KLEINE-DOPKE,A.BERKES,G.GORE,J.P.LEIMKOHL,H.SCHIKORA, JRNL AUTH 3 M.KOLLEWE,H.ROHDE,M.WILMANNS,F.TELLKAMP,E.C.SCHULZ JRNL TITL MILLISECOND CRYO-TRAPPING BY THE SPITROBOT CRYSTAL PLUNGER JRNL TITL 2 SIMPLIFIES TIME-RESOLVED CRYSTALLOGRAPHY. JRNL REF NAT COMMUN V. 14 2365 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37185266 JRNL DOI 10.1038/S41467-023-37834-W REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 3219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.2700 - 4.5500 1.00 2772 123 0.1866 0.2250 REMARK 3 2 4.5500 - 3.6100 1.00 2676 115 0.1557 0.1839 REMARK 3 3 3.6100 - 3.1500 1.00 2622 113 0.1578 0.1812 REMARK 3 4 3.1500 - 2.8700 1.00 2624 141 0.1690 0.1767 REMARK 3 5 2.8700 - 2.6600 1.00 2549 144 0.1725 0.1868 REMARK 3 6 2.6600 - 2.5000 1.00 2616 112 0.1772 0.1975 REMARK 3 7 2.5000 - 2.3800 1.00 2584 135 0.1621 0.1619 REMARK 3 8 2.3800 - 2.2800 1.00 2570 156 0.1612 0.1773 REMARK 3 9 2.2700 - 2.1900 1.00 2557 135 0.1690 0.1797 REMARK 3 10 2.1900 - 2.1100 1.00 2571 144 0.1636 0.1908 REMARK 3 11 2.1100 - 2.0500 1.00 2572 139 0.1745 0.1929 REMARK 3 12 2.0500 - 1.9900 1.00 2534 170 0.1835 0.1954 REMARK 3 13 1.9900 - 1.9400 1.00 2465 190 0.2124 0.2173 REMARK 3 14 1.9400 - 1.8900 1.00 2536 165 0.1919 0.2208 REMARK 3 15 1.8900 - 1.8500 1.00 2556 147 0.1869 0.2188 REMARK 3 16 1.8400 - 1.8100 1.00 2548 128 0.1791 0.2060 REMARK 3 17 1.8100 - 1.7700 1.00 2542 158 0.1708 0.1974 REMARK 3 18 1.7700 - 1.7400 1.00 2560 133 0.1754 0.1990 REMARK 3 19 1.7400 - 1.7100 1.00 2539 148 0.1830 0.1850 REMARK 3 20 1.7100 - 1.6800 1.00 2578 122 0.1857 0.1733 REMARK 3 21 1.6800 - 1.6500 1.00 2551 144 0.1892 0.2061 REMARK 3 22 1.6500 - 1.6200 1.00 2553 127 0.2023 0.2033 REMARK 3 23 1.6200 - 1.6000 1.00 2527 130 0.2303 0.2605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.719 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3196 REMARK 3 ANGLE : 0.847 4338 REMARK 3 CHIRALITY : 0.048 447 REMARK 3 PLANARITY : 0.009 595 REMARK 3 DIHEDRAL : 5.000 448 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292125265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62424 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 71.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 662.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6RNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (W/V) PEG3350, 200 MM LITHIUM REMARK 280 SULFATE AND 10 MM HEPES/NAOH PH 7.5, BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.17500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.65000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.17500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.17500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.17500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.70000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 92.70000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 867 O HOH A 869 1.85 REMARK 500 O HOH A 530 O HOH A 891 1.91 REMARK 500 O HOH A 866 O HOH A 885 1.92 REMARK 500 O HOH A 662 O HOH A 847 1.92 REMARK 500 OD2 ASP A 28 O HOH A 501 1.92 REMARK 500 OD1 ASN A 2 O HOH A 502 1.93 REMARK 500 O HOH A 794 O HOH A 938 1.94 REMARK 500 O HOH A 504 O HOH A 687 1.98 REMARK 500 O HOH A 805 O HOH A 931 1.98 REMARK 500 O HOH A 625 O HOH A 912 1.98 REMARK 500 O HOH A 912 O HOH A 955 2.01 REMARK 500 O HOH A 506 O HOH A 758 2.03 REMARK 500 O HOH A 577 O HOH A 894 2.03 REMARK 500 O HOH A 513 O HOH A 924 2.03 REMARK 500 O HOH A 977 O HOH A 986 2.06 REMARK 500 O HOH A 560 O HOH A 912 2.09 REMARK 500 OE2 GLU A 217 O HOH A 503 2.10 REMARK 500 O HOH A 924 O HOH A 979 2.10 REMARK 500 OD1 ASP A 81 O HOH A 504 2.10 REMARK 500 O HOH A 866 O HOH A 905 2.14 REMARK 500 O HOH A 827 O HOH A 973 2.16 REMARK 500 O HOH A 820 O HOH A 852 2.16 REMARK 500 O HOH A 926 O HOH A 965 2.16 REMARK 500 O HOH A 522 O HOH A 952 2.17 REMARK 500 O HOH A 680 O HOH A 853 2.17 REMARK 500 O HOH A 912 O HOH A 933 2.18 REMARK 500 O HOH A 742 O HOH A 856 2.19 REMARK 500 O HOH A 830 O HOH A 950 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -75.49 -86.62 REMARK 500 PHE A 94 -22.05 -144.80 REMARK 500 GLU A 186 111.66 77.20 REMARK 500 ASN A 247 -167.28 -167.91 REMARK 500 ASN A 250 76.94 -100.37 REMARK 500 PHE A 357 -73.48 -158.74 REMARK 500 ARG A 387 -131.17 -89.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 984 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 986 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 GLU A 217 OE1 94.2 REMARK 620 3 ASP A 245 OD2 99.0 107.1 REMARK 620 4 ASP A 287 OD2 151.9 91.5 105.6 REMARK 620 5 BU9 A 403 O6 85.6 162.4 90.2 80.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 210 OE1 REMARK 620 2 HOH A 560 O 86.1 REMARK 620 3 HOH A 625 O 134.6 64.4 REMARK 620 4 HOH A 912 O 127.8 44.2 46.9 REMARK 620 5 HOH A 933 O 101.3 60.9 93.8 47.0 REMARK 620 6 HOH A 948 O 110.1 163.6 103.3 119.6 111.6 REMARK 620 7 HOH A 955 O 166.4 85.4 48.9 41.7 65.3 78.3 REMARK 620 N 1 2 3 4 5 6 DBREF 8AWY A 1 388 UNP P24300 XYLA_STRRU 1 388 SEQRES 1 A 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET MG A 401 1 HET MG A 402 1 HET BU9 A 403 6 HET MG A 404 1 HETNAM MG MAGNESIUM ION HETNAM BU9 MESO-2,3-BUTANEDIOL FORMUL 2 MG 3(MG 2+) FORMUL 4 BU9 C4 H10 O2 FORMUL 6 HOH *486(H2 O) HELIX 1 AA1 THR A 6 ASP A 9 5 4 HELIX 2 AA2 LEU A 15 GLY A 19 1 5 HELIX 3 AA3 ASP A 35 LEU A 46 1 12 HELIX 4 AA4 ASP A 55 ILE A 59 1 5 HELIX 5 AA5 SER A 64 GLY A 83 1 20 HELIX 6 AA6 HIS A 96 LYS A 100 5 5 HELIX 7 AA7 ASP A 108 LEU A 129 1 22 HELIX 8 AA8 ASP A 150 GLY A 173 1 24 HELIX 9 AA9 THR A 195 GLU A 204 1 10 HELIX 10 AB1 ARG A 208 GLU A 210 5 3 HELIX 11 AB2 GLU A 217 MET A 223 1 7 HELIX 12 AB3 ASN A 227 ALA A 238 1 12 HELIX 13 AB4 ASP A 264 GLY A 279 1 16 HELIX 14 AB5 ASP A 295 ASP A 323 1 29 HELIX 15 AB6 ASP A 323 SER A 333 1 11 HELIX 16 AB7 ARG A 334 ALA A 339 1 6 HELIX 17 AB8 GLY A 346 ASP A 353 1 8 HELIX 18 AB9 ARG A 354 PHE A 357 5 4 HELIX 19 AC1 ASP A 361 ARG A 368 1 8 HELIX 20 AC2 ALA A 371 GLY A 385 1 15 SHEET 1 AA1 8 TYR A 212 VAL A 214 0 SHEET 2 AA1 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 AA1 8 THR A 133 ALA A 136 1 N TYR A 134 O ARG A 177 SHEET 4 AA1 8 LYS A 85 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 AA1 8 GLY A 50 HIS A 54 1 N VAL A 51 O LYS A 85 SHEET 6 AA1 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 AA1 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 AA1 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 AA2 2 GLY A 142 ALA A 143 0 SHEET 2 AA2 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 LINK OE2 GLU A 181 MG MG A 401 1555 1555 1.91 LINK OE1 GLU A 210 MG MG A 404 1555 1555 2.76 LINK OE1 GLU A 217 MG MG A 401 1555 1555 2.07 LINK OD2 ASP A 245 MG MG A 401 1555 1555 2.10 LINK OD2 ASP A 287 MG MG A 401 1555 1555 1.92 LINK MG MG A 401 O6 BU9 A 403 1555 1555 2.33 LINK MG MG A 402 O HOH A 640 1555 1555 2.89 LINK MG MG A 404 O HOH A 560 1555 1555 2.98 LINK MG MG A 404 O HOH A 625 1555 1555 2.72 LINK MG MG A 404 O HOH A 912 1555 1555 1.87 LINK MG MG A 404 O HOH A 933 1555 1555 2.97 LINK MG MG A 404 O HOH A 948 1555 1555 2.81 LINK MG MG A 404 O HOH A 955 1555 1555 2.98 CISPEP 1 GLU A 186 PRO A 187 0 13.39 CRYST1 92.700 102.350 99.300 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010787 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009770 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010070 0.00000