HEADER HYDROLASE 30-AUG-22 8AX3 TITLE STRUCTURE OF RECOMBINANT HUMAN BETA-GLUCOCEREBROSIDASE IN COMPLEX WITH TITLE 2 L-CARBAXYLOSYL FLUORIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOSOMAL ACID GLUCOSYLCERAMIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSOSOMAL ACID GCASE,ACID BETA-GLUCOSIDASE,ALGLUCERASE,BETA- COMPND 5 GLUCOCEREBROSIDASE,BETA-GC,CHOLESTEROL GLUCOSYLTRANSFERASE,SGTASE, COMPND 6 CHOLESTERYL-BETA-GLUCOSIDASE,D-GLUCOSYL-N-ACYLSPHINGOSINE COMPND 7 GLUCOHYDROLASE,IMIGLUCERASE; COMPND 8 EC: 3.2.1.45,2.4.1.-,3.2.1.104; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: HUMAN BETA-GLUCOCEREBROSIDASE WITH THE N-TERMINAL COMPND 11 SIGNALLING SEQUENCE MISSING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GBA, GC, GLUC; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIFIVE KEYWDS BETA-GLUCOCEREBROSIDASE, GLYCOSIDE HYDROLASE, INHIBITOR, CARBASUGAR, KEYWDS 2 PHARMACOLOGICAL CHAPERONE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.J.ROWLAND,G.J.DAVIES REVDAT 2 06-NOV-24 8AX3 1 REMARK REVDAT 1 13-MAR-24 8AX3 0 JRNL AUTH S.BHOSALE,S.KANDALKAR,P.A.GILORMINI,O.AKINTOLA,R.J.ROWLAND, JRNL AUTH 2 P.J.P.ADABALA,D.KING,M.C.DEEN,K.XI,G.J.DAVIES,D.J.VOCADLO, JRNL AUTH 3 A.J.BENNET JRNL TITL SINGLE TURNOVER COVALENT INHIBITORS FOR FUNCTIONAL JRNL TITL 2 CHAPERONING OF LYSOSOMAL GLYCOSIDE HYDROLASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 143489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.965 REMARK 3 FREE R VALUE TEST SET COUNT : 7124 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 502 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7845 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 400 REMARK 3 SOLVENT ATOMS : 893 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.47100 REMARK 3 B22 (A**2) : -0.00300 REMARK 3 B33 (A**2) : -1.50400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8575 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7956 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11613 ; 1.417 ; 1.675 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18332 ; 1.302 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1066 ; 7.453 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 417 ;34.284 ;21.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1309 ;13.142 ;15.107 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.004 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1099 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9464 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1981 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1764 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 112 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3984 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 741 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.205 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4034 ; 1.138 ; 1.943 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4033 ; 1.137 ; 1.943 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5060 ; 1.693 ; 2.914 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5061 ; 1.693 ; 2.915 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4541 ; 1.557 ; 2.220 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4542 ; 1.557 ; 2.220 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6553 ; 2.325 ; 3.225 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6554 ; 2.325 ; 3.226 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976230 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 994940 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 51.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 8AWK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA2SO4, 14% (V/V) PEG3350, 0.25 REMARK 280 M HEPES, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 77.99200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 169 CD OE1 NE2 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS B 303 NZ REMARK 470 LYS B 441 CG CD CE NZ REMARK 470 LYS B 466 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG D 1 H1 NAG D 2 0.32 REMARK 500 O4 NAG D 2 H1 BMA D 3 0.40 REMARK 500 O4 NAG C 2 H1 BMA C 3 0.71 REMARK 500 O4 NAG E 1 H1 NAG E 2 0.72 REMARK 500 O4 NAG C 1 H1 NAG C 2 0.72 REMARK 500 HO4 NAG D 1 H1 NAG D 2 1.17 REMARK 500 HO4 NAG D 2 H1 BMA D 3 1.23 REMARK 500 HD1 HIS B 451 H ASP B 453 1.27 REMARK 500 HE1 TRP B 381 H7 OD0 B 516 1.27 REMARK 500 HO4 NAG C 1 H1 NAG C 2 1.31 REMARK 500 HH12 ARG A 170 O SER A 424 1.51 REMARK 500 H GLN A 169 O2 EDO A 525 1.57 REMARK 500 HZ3 LYS B 106 O HOH B 615 1.59 REMARK 500 OE2 GLU B 112 O HOH B 601 1.99 REMARK 500 OD1 ASP B 405 O HOH B 602 2.01 REMARK 500 O LEU B 165 O HOH B 603 2.07 REMARK 500 NH1 ARG A 170 O SER A 424 2.12 REMARK 500 OE1 GLN B 166 O HOH B 604 2.13 REMARK 500 O LEU B 165 O HOH B 603 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 70 74.08 -112.76 REMARK 500 PHE A 75 -131.63 -119.08 REMARK 500 ALA A 124 -148.05 74.87 REMARK 500 ALA A 136 64.81 -151.48 REMARK 500 LEU A 156 -69.01 -108.27 REMARK 500 ASN A 192 -166.69 -119.79 REMARK 500 GLU A 233 131.61 167.08 REMARK 500 GLU A 235 64.66 39.88 REMARK 500 LEU A 281 -80.86 73.68 REMARK 500 THR A 323 -78.79 -117.30 REMARK 500 HIS A 374 2.83 82.09 REMARK 500 TRP A 381 -137.59 -84.69 REMARK 500 PHE B 31 74.73 51.49 REMARK 500 GLN B 70 79.87 -118.19 REMARK 500 PHE B 75 -132.82 -121.04 REMARK 500 ALA B 124 -148.61 71.76 REMARK 500 LEU B 156 -71.01 -104.43 REMARK 500 ASN B 192 -167.44 -120.87 REMARK 500 GLU B 233 140.30 170.01 REMARK 500 ASP B 263 -70.62 -122.54 REMARK 500 LEU B 281 -79.52 72.67 REMARK 500 THR B 323 -77.50 -118.68 REMARK 500 HIS B 374 0.88 84.96 REMARK 500 TRP B 381 -132.18 -88.24 REMARK 500 ASN B 392 119.28 -162.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1050 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A1051 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A1053 DISTANCE = 9.33 ANGSTROMS REMARK 525 HOH B1037 DISTANCE = 6.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 530 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 891 O REMARK 620 2 HOH A 987 O 85.5 REMARK 620 3 HOH A1023 O 112.7 104.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8AWR RELATED DB: PDB REMARK 900 SAME PROTEIN WITH L-CARBAXYLOSYL CHLORIDE REMARK 900 RELATED ID: 8AWK RELATED DB: PDB REMARK 900 SAME PROTEIN WITH D-CARBAXYLOSYL CHLORIDE DBREF 8AX3 A 1 497 UNP P04062 GLCM_HUMAN 40 536 DBREF 8AX3 B 1 497 UNP P04062 GLCM_HUMAN 40 536 SEQRES 1 A 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 A 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 A 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 A 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 A 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 A 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 A 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 A 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 A 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 A 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 A 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 A 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 A 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 A 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 A 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 A 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 A 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 A 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 A 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 A 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 A 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 A 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 A 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 A 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 A 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 A 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 A 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 A 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 A 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 A 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 A 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 A 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 A 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 A 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 A 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 A 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 A 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 A 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 A 497 ARG ARG GLN SEQRES 1 B 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 B 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 B 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 B 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 B 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 B 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 B 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 B 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 B 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 B 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 B 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 B 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 B 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 B 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 B 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 B 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 B 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 B 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 B 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 B 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 B 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 B 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 B 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 B 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 B 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 B 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 B 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 B 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 B 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 B 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 B 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 B 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 B 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 B 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 B 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 B 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 B 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 B 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 B 497 ARG ARG GLN HET NAG C 1 28 HET NAG C 2 28 HET BMA C 3 22 HET NAG D 1 28 HET NAG D 2 28 HET BMA D 3 22 HET NAG E 1 28 HET NAG E 2 28 HET SO4 A 501 5 HET SO4 A 502 5 HET EDO A 503 10 HET EDO A 504 10 HET EDO A 505 10 HET EDO A 506 10 HET EDO A 507 10 HET EDO A 508 10 HET EDO A 509 10 HET NAG A 510 28 HET EDO A 511 10 HET EDO A 512 10 HET SO4 A 513 5 HET EDO A 514 10 HET OD0 A 515 19 HET EDO A 516 10 HET EDO A 517 10 HET OD0 A 518 19 HET EDO A 519 10 HET EDO A 520 10 HET EDO A 521 10 HET EDO A 522 10 HET EDO A 523 10 HET EDO A 524 10 HET EDO A 525 10 HET EDO A 526 10 HET EDO A 527 20 HET EDO A 528 10 HET EDO A 529 20 HET NA A 530 1 HET SO4 B 501 5 HET EDO B 502 10 HET EDO B 503 10 HET SO4 B 504 5 HET EDO B 505 10 HET EDO B 506 10 HET EDO B 507 10 HET EDO B 508 10 HET EDO B 509 10 HET EDO B 510 10 HET EDO B 511 10 HET EDO B 512 10 HET NAG B 513 28 HET SO4 B 514 5 HET OD0 B 515 19 HET OD0 B 516 19 HET EDO B 517 10 HET EDO B 518 10 HET EDO B 519 10 HET EDO B 520 10 HET EDO B 521 10 HET GOL B 522 14 HET EDO B 523 10 HET EDO B 524 10 HET EDO B 525 10 HET EDO B 526 20 HET EDO B 527 10 HET EDO B 528 10 HET EDO B 529 10 HET EDO B 530 10 HET EDO B 531 10 HET CA B 532 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM OD0 (1~{S},2~{R},3~{S},6~{S})-6-FLUORANYLCYCLOHEX-4-ENE-1, HETNAM 2 OD0 2,3-TRIOL HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 6 SO4 6(O4 S 2-) FORMUL 8 EDO 47(C2 H6 O2) FORMUL 20 OD0 4(C6 H9 F O3) FORMUL 35 NA NA 1+ FORMUL 57 GOL C3 H8 O3 FORMUL 67 CA CA 2+ FORMUL 68 HOH *893(H2 O) HELIX 1 AA1 THR A 86 ALA A 95 1 10 HELIX 2 AA2 SER A 97 SER A 110 1 14 HELIX 3 AA3 PRO A 150 LYS A 155 1 6 HELIX 4 AA4 LEU A 156 ALA A 168 1 13 HELIX 5 AA5 PRO A 182 LYS A 186 5 5 HELIX 6 AA6 ASP A 203 HIS A 223 1 21 HELIX 7 AA7 GLU A 235 LEU A 241 5 7 HELIX 8 AA8 THR A 252 ASP A 263 1 12 HELIX 9 AA9 ASP A 263 ASN A 270 1 8 HELIX 10 AB1 LEU A 286 LEU A 288 5 3 HELIX 11 AB2 PRO A 289 THR A 297 1 9 HELIX 12 AB3 ASP A 298 LYS A 303 1 6 HELIX 13 AB4 LEU A 314 ALA A 318 5 5 HELIX 14 AB5 THR A 323 PHE A 331 1 9 HELIX 15 AB6 SER A 356 TYR A 373 1 18 HELIX 16 AB7 ILE A 406 ASP A 409 5 4 HELIX 17 AB8 GLN A 414 LYS A 425 1 12 HELIX 18 AB9 THR B 86 ALA B 95 1 10 HELIX 19 AC1 SER B 97 SER B 110 1 14 HELIX 20 AC2 PRO B 150 LYS B 155 1 6 HELIX 21 AC3 LEU B 156 ALA B 168 1 13 HELIX 22 AC4 PRO B 182 LYS B 186 5 5 HELIX 23 AC5 ASP B 203 HIS B 223 1 21 HELIX 24 AC6 GLU B 235 LEU B 241 5 7 HELIX 25 AC7 THR B 252 ASP B 263 1 12 HELIX 26 AC8 ASP B 263 ASN B 270 1 8 HELIX 27 AC9 LEU B 286 LEU B 288 5 3 HELIX 28 AD1 PRO B 289 THR B 297 1 9 HELIX 29 AD2 ASP B 298 LYS B 303 1 6 HELIX 30 AD3 LEU B 314 ALA B 318 5 5 HELIX 31 AD4 THR B 323 PHE B 331 1 9 HELIX 32 AD5 SER B 356 TYR B 373 1 18 HELIX 33 AD6 ILE B 406 ASP B 409 5 4 HELIX 34 AD7 GLN B 414 LYS B 425 1 12 SHEET 1 AA1 4 PRO A 6 LYS A 7 0 SHEET 2 AA1 4 VAL A 15 CYS A 18 -1 O VAL A 15 N LYS A 7 SHEET 3 AA1 4 THR A 410 LYS A 413 -1 O LYS A 413 N CYS A 16 SHEET 4 AA1 4 ILE A 402 ASP A 405 -1 N ASP A 405 O THR A 410 SHEET 1 AA2 9 GLU A 50 PRO A 55 0 SHEET 2 AA2 9 THR A 36 THR A 43 -1 N ARG A 39 O SER A 52 SHEET 3 AA2 9 SER A 488 TRP A 494 -1 O THR A 491 N TYR A 40 SHEET 4 AA2 9 ALA A 456 ASN A 462 -1 N VAL A 458 O TYR A 492 SHEET 5 AA2 9 LEU A 444 MET A 450 -1 N ASP A 445 O LEU A 461 SHEET 6 AA2 9 GLN A 432 ALA A 438 -1 N GLN A 432 O MET A 450 SHEET 7 AA2 9 LEU A 65 LYS A 77 -1 N THR A 68 O VAL A 437 SHEET 8 AA2 9 VAL A 468 ASP A 474 1 O LYS A 473 N LEU A 69 SHEET 9 AA2 9 GLY A 478 SER A 484 -1 O GLY A 478 N ASP A 474 SHEET 1 AA3 9 GLY A 80 ALA A 84 0 SHEET 2 AA3 9 ILE A 118 MET A 123 1 O ARG A 120 N GLY A 83 SHEET 3 AA3 9 SER A 173 PRO A 178 1 O LEU A 175 N VAL A 121 SHEET 4 AA3 9 ALA A 229 THR A 231 1 O THR A 231 N ALA A 176 SHEET 5 AA3 9 ARG A 277 GLN A 284 1 O LEU A 279 N VAL A 230 SHEET 6 AA3 9 GLY A 307 HIS A 311 1 O ALA A 309 N MET A 280 SHEET 7 AA3 9 MET A 335 GLU A 340 1 O PHE A 337 N ILE A 308 SHEET 8 AA3 9 VAL A 375 ASN A 382 1 O VAL A 376 N LEU A 336 SHEET 9 AA3 9 GLY A 80 ALA A 84 1 N GLY A 82 O ASP A 380 SHEET 1 AA4 4 PRO B 6 LYS B 7 0 SHEET 2 AA4 4 VAL B 15 CYS B 18 -1 O VAL B 15 N LYS B 7 SHEET 3 AA4 4 THR B 410 LYS B 413 -1 O LYS B 413 N CYS B 16 SHEET 4 AA4 4 ILE B 402 ASP B 405 -1 N ASP B 405 O THR B 410 SHEET 1 AA5 9 GLU B 50 PRO B 55 0 SHEET 2 AA5 9 THR B 36 THR B 43 -1 N ARG B 39 O SER B 52 SHEET 3 AA5 9 SER B 488 TRP B 494 -1 O LEU B 493 N SER B 38 SHEET 4 AA5 9 ALA B 456 ASN B 462 -1 N ALA B 456 O TRP B 494 SHEET 5 AA5 9 LEU B 444 MET B 450 -1 N ASP B 445 O LEU B 461 SHEET 6 AA5 9 GLN B 432 ALA B 438 -1 N GLN B 432 O MET B 450 SHEET 7 AA5 9 LEU B 65 LYS B 77 -1 N THR B 68 O VAL B 437 SHEET 8 AA5 9 VAL B 468 ASP B 474 1 O LYS B 473 N LEU B 67 SHEET 9 AA5 9 GLY B 478 SER B 484 -1 O GLY B 478 N ASP B 474 SHEET 1 AA6 9 GLY B 80 ALA B 84 0 SHEET 2 AA6 9 ILE B 118 MET B 123 1 O ARG B 120 N GLY B 83 SHEET 3 AA6 9 SER B 173 PRO B 178 1 O LEU B 175 N VAL B 121 SHEET 4 AA6 9 ALA B 229 THR B 231 1 O THR B 231 N ALA B 176 SHEET 5 AA6 9 ARG B 277 GLN B 284 1 O LEU B 279 N VAL B 230 SHEET 6 AA6 9 GLY B 307 HIS B 311 1 O ALA B 309 N MET B 280 SHEET 7 AA6 9 MET B 335 GLU B 340 1 O MET B 335 N ILE B 308 SHEET 8 AA6 9 VAL B 375 ASN B 382 1 O VAL B 376 N LEU B 336 SHEET 9 AA6 9 GLY B 80 ALA B 84 1 N GLY B 82 O ASP B 380 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.10 SSBOND 2 CYS A 18 CYS A 23 1555 1555 2.08 SSBOND 3 CYS B 4 CYS B 16 1555 1555 2.09 SSBOND 4 CYS B 18 CYS B 23 1555 1555 2.06 LINK ND2 ASN A 19 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 146 C1 NAG A 510 1555 1555 1.44 LINK ND2 ASN B 19 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 59 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN B 146 C1 NAG B 513 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.34 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.35 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.35 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.34 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.34 LINK NA NA A 530 O HOH A 891 1555 1555 2.69 LINK NA NA A 530 O HOH A 987 1555 1555 2.46 LINK NA NA A 530 O HOH A1023 1555 1555 2.20 LINK OE1 GLU B 235 CA CA B 532 1555 1555 3.13 CISPEP 1 LEU A 288 PRO A 289 0 4.23 CISPEP 2 GLY A 390 PRO A 391 0 1.97 CISPEP 3 LEU B 288 PRO B 289 0 2.13 CISPEP 4 GLY B 390 PRO B 391 0 2.67 CRYST1 52.920 155.984 68.036 90.00 101.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018896 0.000000 0.004004 0.00000 SCALE2 0.000000 0.006411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015024 0.00000