HEADER VIRAL PROTEIN 30-AUG-22 8AX4 TITLE CRYSTAL STRUCTURE OF FMV N IN ITS RNA-FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: NUCLEOPROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMARAVIRUS FICI; SOURCE 3 ORGANISM_TAXID: 1980427; SOURCE 4 GENE: NP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS NUCLEOPROTEIN, GENOME PACKAGING, VIRUS, RNA, FIG MOSAIC VIRUS, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.IZHAKI-TAVOR,I.YECHEZKEL,M.DESSAU REVDAT 4 13-NOV-24 8AX4 1 JRNL REVDAT 3 28-JUN-23 8AX4 1 JRNL REVDAT 2 19-APR-23 8AX4 1 JRNL REVDAT 1 05-APR-23 8AX4 0 JRNL AUTH L.S.IZHAKI-TAVOR,I.G.YECHEZKEL,J.ALTER,M.DESSAU JRNL TITL RNA ENCAPSULATION MODE AND EVOLUTIONARY INSIGHTS FROM THE JRNL TITL 2 CRYSTAL STRUCTURE OF EMARAVIRUS NUCLEOPROTEIN. JRNL REF MICROBIOL SPECTR V. 11 01822 2023 JRNL REFN ISSN 2165-0497 JRNL PMID 37039649 JRNL DOI 10.1128/SPECTRUM.05018-22 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 76726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.510 REMARK 3 FREE R VALUE TEST SET COUNT : 1927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4600 - 5.4900 0.99 5915 154 0.1873 0.1977 REMARK 3 2 5.4900 - 4.3600 1.00 5857 152 0.1687 0.1585 REMARK 3 3 4.3600 - 3.8100 0.99 5806 149 0.1620 0.1791 REMARK 3 4 3.8100 - 3.4600 1.00 5769 152 0.1819 0.1815 REMARK 3 5 3.4600 - 3.2100 1.00 5857 141 0.2206 0.2465 REMARK 3 6 3.2100 - 3.0200 1.00 5782 154 0.2275 0.2229 REMARK 3 7 3.0200 - 2.8700 1.00 5810 145 0.2462 0.2580 REMARK 3 8 2.8700 - 2.7500 1.00 5805 151 0.2644 0.2833 REMARK 3 9 2.7500 - 2.6400 1.00 5774 144 0.2806 0.2524 REMARK 3 10 2.6400 - 2.5500 1.00 5791 148 0.2986 0.3006 REMARK 3 11 2.5500 - 2.4700 1.00 5791 148 0.3160 0.3406 REMARK 3 12 2.4700 - 2.4000 0.92 5303 142 0.3444 0.2864 REMARK 3 13 2.4000 - 2.3400 0.57 3307 83 0.3325 0.3738 REMARK 3 14 2.3400 - 2.2800 0.39 2232 64 0.3337 0.3158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 31.0359 26.0389 14.1097 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.2747 REMARK 3 T33: 0.2858 T12: 0.0172 REMARK 3 T13: 0.0189 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.1423 L22: 0.3410 REMARK 3 L33: 0.3133 L12: 0.0926 REMARK 3 L13: -0.0105 L23: 0.1530 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0032 S13: -0.0209 REMARK 3 S21: -0.0359 S22: -0.0429 S23: -0.0206 REMARK 3 S31: -0.0177 S32: -0.0086 S33: 0.0322 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1292125269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82002 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 48.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.611 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.64 REMARK 200 R MERGE FOR SHELL (I) : 1.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.45 MM SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.46000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 ILE A 14 REMARK 465 THR A 15 REMARK 465 PRO A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 MET A 19 REMARK 465 GLN A 20 REMARK 465 GLU A 21 REMARK 465 ASN A 22 REMARK 465 THR A 23 REMARK 465 VAL A 24 REMARK 465 LEU A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 LYS A 31 REMARK 465 LEU A 32 REMARK 465 LYS A 33 REMARK 465 ALA A 34 REMARK 465 ILE A 35 REMARK 465 LYS A 36 REMARK 465 LEU A 37 REMARK 465 THR A 38 REMARK 465 ASN A 39 REMARK 465 VAL A 40 REMARK 465 VAL A 41 REMARK 465 ASN A 42 REMARK 465 GLY A 43 REMARK 465 LYS A 44 REMARK 465 LEU A 45 REMARK 465 THR A 46 REMARK 465 HIS A 47 REMARK 465 PRO A 48 REMARK 465 GLU A 49 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 ASP A 52 REMARK 465 HIS A 313 REMARK 465 VAL A 314 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 LYS B 13 REMARK 465 ILE B 14 REMARK 465 THR B 15 REMARK 465 PRO B 16 REMARK 465 GLY B 17 REMARK 465 GLN B 18 REMARK 465 MET B 19 REMARK 465 GLN B 20 REMARK 465 GLU B 21 REMARK 465 ASN B 22 REMARK 465 THR B 23 REMARK 465 VAL B 24 REMARK 465 LEU B 25 REMARK 465 LEU B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 SER B 30 REMARK 465 LYS B 31 REMARK 465 LEU B 32 REMARK 465 LYS B 33 REMARK 465 ALA B 34 REMARK 465 ILE B 35 REMARK 465 LYS B 36 REMARK 465 LEU B 37 REMARK 465 THR B 38 REMARK 465 ASN B 39 REMARK 465 VAL B 40 REMARK 465 VAL B 41 REMARK 465 ASN B 42 REMARK 465 GLY B 43 REMARK 465 LYS B 44 REMARK 465 LEU B 45 REMARK 465 THR B 46 REMARK 465 HIS B 47 REMARK 465 PRO B 48 REMARK 465 GLU B 49 REMARK 465 THR B 50 REMARK 465 SER B 51 REMARK 465 SER B 311 REMARK 465 ALA B 312 REMARK 465 HIS B 313 REMARK 465 VAL B 314 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 PRO C 2 REMARK 465 LYS C 3 REMARK 465 SER C 4 REMARK 465 LYS C 5 REMARK 465 THR C 6 REMARK 465 THR C 7 REMARK 465 SER C 8 REMARK 465 ALA C 9 REMARK 465 SER C 10 REMARK 465 SER C 11 REMARK 465 SER C 12 REMARK 465 LYS C 13 REMARK 465 ILE C 14 REMARK 465 THR C 15 REMARK 465 PRO C 16 REMARK 465 GLY C 17 REMARK 465 GLN C 18 REMARK 465 MET C 19 REMARK 465 GLN C 20 REMARK 465 GLU C 21 REMARK 465 ASN C 22 REMARK 465 THR C 23 REMARK 465 VAL C 24 REMARK 465 LEU C 25 REMARK 465 LEU C 26 REMARK 465 GLY C 27 REMARK 465 SER C 28 REMARK 465 GLY C 29 REMARK 465 SER C 30 REMARK 465 LYS C 31 REMARK 465 LEU C 32 REMARK 465 LYS C 33 REMARK 465 ALA C 34 REMARK 465 ILE C 35 REMARK 465 LYS C 36 REMARK 465 LEU C 37 REMARK 465 THR C 38 REMARK 465 ASN C 39 REMARK 465 VAL C 40 REMARK 465 VAL C 41 REMARK 465 ASN C 42 REMARK 465 GLY C 43 REMARK 465 LYS C 44 REMARK 465 LEU C 45 REMARK 465 THR C 46 REMARK 465 HIS C 47 REMARK 465 PRO C 48 REMARK 465 GLU C 49 REMARK 465 THR C 50 REMARK 465 ALA C 312 REMARK 465 HIS C 313 REMARK 465 VAL C 314 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 PRO D 2 REMARK 465 LYS D 3 REMARK 465 SER D 4 REMARK 465 LYS D 5 REMARK 465 THR D 6 REMARK 465 THR D 7 REMARK 465 SER D 8 REMARK 465 ALA D 9 REMARK 465 SER D 10 REMARK 465 SER D 11 REMARK 465 SER D 12 REMARK 465 LYS D 13 REMARK 465 ILE D 14 REMARK 465 THR D 15 REMARK 465 PRO D 16 REMARK 465 GLY D 17 REMARK 465 GLN D 18 REMARK 465 MET D 19 REMARK 465 GLN D 20 REMARK 465 GLU D 21 REMARK 465 ASN D 22 REMARK 465 THR D 23 REMARK 465 VAL D 24 REMARK 465 LEU D 25 REMARK 465 LEU D 26 REMARK 465 GLY D 27 REMARK 465 SER D 28 REMARK 465 GLY D 29 REMARK 465 SER D 30 REMARK 465 LYS D 31 REMARK 465 LEU D 32 REMARK 465 LYS D 33 REMARK 465 ALA D 34 REMARK 465 ILE D 35 REMARK 465 LYS D 36 REMARK 465 LEU D 37 REMARK 465 THR D 38 REMARK 465 ASN D 39 REMARK 465 VAL D 40 REMARK 465 VAL D 41 REMARK 465 ASN D 42 REMARK 465 GLY D 43 REMARK 465 LYS D 44 REMARK 465 LEU D 45 REMARK 465 THR D 46 REMARK 465 HIS D 47 REMARK 465 PRO D 48 REMARK 465 GLU D 49 REMARK 465 THR D 50 REMARK 465 SER D 51 REMARK 465 SER D 311 REMARK 465 ALA D 312 REMARK 465 HIS D 313 REMARK 465 VAL D 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 464 O HOH D 476 1.75 REMARK 500 O HOH D 476 O HOH D 519 1.89 REMARK 500 OG SER D 267 O HOH D 401 2.02 REMARK 500 O HOH A 556 O HOH B 520 2.04 REMARK 500 NH1 ARG C 308 O HOH C 501 2.06 REMARK 500 O LEU C 260 O HOH C 502 2.08 REMARK 500 OE1 GLN A 219 O HOH A 401 2.11 REMARK 500 NH1 ARG C 308 O HOH C 503 2.15 REMARK 500 O HOH C 555 O HOH C 699 2.15 REMARK 500 O HOH C 641 O HOH C 662 2.16 REMARK 500 O HOH C 680 O HOH C 719 2.18 REMARK 500 O MET A 183 O HOH A 402 2.18 REMARK 500 OG1 THR B 166 O HOH B 401 2.19 REMARK 500 OD1 ASN A 225 O HOH A 403 2.19 REMARK 500 O HOH D 501 O HOH D 546 2.19 REMARK 500 O HOH C 661 O HOH C 699 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 57 O HOH B 571 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 120 C LYS C 120 O 0.193 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 64.11 31.80 REMARK 500 TYR A 220 40.05 -99.44 REMARK 500 LYS B 54 63.74 38.70 REMARK 500 GLN B 61 88.31 -156.06 REMARK 500 TYR B 220 42.75 -102.97 REMARK 500 LYS C 54 69.01 34.46 REMARK 500 GLU C 121 88.20 65.38 REMARK 500 TYR C 220 40.88 -102.87 REMARK 500 LYS D 54 67.14 37.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 597 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH C 720 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH C 721 DISTANCE = 6.31 ANGSTROMS DBREF 8AX4 A 0 314 UNP I2FFM8 I2FFM8_9VIRU 1 315 DBREF 8AX4 B 0 314 UNP I2FFM8 I2FFM8_9VIRU 1 315 DBREF 8AX4 C 0 314 UNP I2FFM8 I2FFM8_9VIRU 1 315 DBREF 8AX4 D 0 314 UNP I2FFM8 I2FFM8_9VIRU 1 315 SEQRES 1 A 315 MET ALA PRO LYS SER LYS THR THR SER ALA SER SER SER SEQRES 2 A 315 LYS ILE THR PRO GLY GLN MET GLN GLU ASN THR VAL LEU SEQRES 3 A 315 LEU GLY SER GLY SER LYS LEU LYS ALA ILE LYS LEU THR SEQRES 4 A 315 ASN VAL VAL ASN GLY LYS LEU THR HIS PRO GLU THR SER SEQRES 5 A 315 ASP LEU LYS PRO ILE ASP VAL GLU VAL GLN ALA PHE THR SEQRES 6 A 315 SER ALA SER GLN ASN ILE SER ASN PHE THR LEU HIS LYS SEQRES 7 A 315 TYR ARG ASN ILE CYS HIS VAL ASP THR CYS ALA ALA HIS SEQRES 8 A 315 LEU SER LYS SER LYS GLU ASN LYS GLU LYS LEU GLN ALA SEQRES 9 A 315 ARG ASN LEU ARG LEU ILE VAL SER SER ASN GLU PHE LEU SEQRES 10 A 315 VAL VAL VAL LYS GLU LEU ASN ASP SER THR VAL ASP ASN SEQRES 11 A 315 VAL VAL SER PHE ASN LYS ALA CYS ALA ILE MET SER ALA SEQRES 12 A 315 GLY VAL LEU LYS HIS THR PHE ASP GLU GLU PHE ASP TRP SEQRES 13 A 315 LYS LEU SER LYS TYR VAL LYS THR ASN ASN THR THR LYS SEQRES 14 A 315 VAL ILE PRO ASP VAL LYS ILE ILE ASN ARG LEU ALA GLY SEQRES 15 A 315 GLN MET GLY LEU SER ALA GLY ASN PRO TYR TYR TRP MET SEQRES 16 A 315 ILE VAL PRO GLY TYR GLU PHE LEU TYR GLU LEU TYR PRO SEQRES 17 A 315 ALA GLU VAL LEU ALA TYR THR LEU VAL ARG LEU GLN TYR SEQRES 18 A 315 ARG LYS ASN LEU ASN ILE PRO ASP SER MET THR ASP ALA SEQRES 19 A 315 ASP ILE VAL SER SER LEU VAL MET LYS MET ASN ARG ILE SEQRES 20 A 315 HIS LYS LEU GLU GLN THR SER PHE ASP GLU ALA LEU ASN SEQRES 21 A 315 LEU ILE GLY LYS ASP ASN VAL SER GLU ALA TYR VAL GLU SEQRES 22 A 315 LEU ALA ARG ASP ILE GLY SER THR SER LYS THR LYS ARG SEQRES 23 A 315 ASN ASP GLU ALA ILE LEU LYS PHE ARG GLU LEU ILE ALA SEQRES 24 A 315 SER PHE LEU PRO ALA LEU GLU ALA ASP ARG ILE ALA SER SEQRES 25 A 315 ALA HIS VAL SEQRES 1 B 315 MET ALA PRO LYS SER LYS THR THR SER ALA SER SER SER SEQRES 2 B 315 LYS ILE THR PRO GLY GLN MET GLN GLU ASN THR VAL LEU SEQRES 3 B 315 LEU GLY SER GLY SER LYS LEU LYS ALA ILE LYS LEU THR SEQRES 4 B 315 ASN VAL VAL ASN GLY LYS LEU THR HIS PRO GLU THR SER SEQRES 5 B 315 ASP LEU LYS PRO ILE ASP VAL GLU VAL GLN ALA PHE THR SEQRES 6 B 315 SER ALA SER GLN ASN ILE SER ASN PHE THR LEU HIS LYS SEQRES 7 B 315 TYR ARG ASN ILE CYS HIS VAL ASP THR CYS ALA ALA HIS SEQRES 8 B 315 LEU SER LYS SER LYS GLU ASN LYS GLU LYS LEU GLN ALA SEQRES 9 B 315 ARG ASN LEU ARG LEU ILE VAL SER SER ASN GLU PHE LEU SEQRES 10 B 315 VAL VAL VAL LYS GLU LEU ASN ASP SER THR VAL ASP ASN SEQRES 11 B 315 VAL VAL SER PHE ASN LYS ALA CYS ALA ILE MET SER ALA SEQRES 12 B 315 GLY VAL LEU LYS HIS THR PHE ASP GLU GLU PHE ASP TRP SEQRES 13 B 315 LYS LEU SER LYS TYR VAL LYS THR ASN ASN THR THR LYS SEQRES 14 B 315 VAL ILE PRO ASP VAL LYS ILE ILE ASN ARG LEU ALA GLY SEQRES 15 B 315 GLN MET GLY LEU SER ALA GLY ASN PRO TYR TYR TRP MET SEQRES 16 B 315 ILE VAL PRO GLY TYR GLU PHE LEU TYR GLU LEU TYR PRO SEQRES 17 B 315 ALA GLU VAL LEU ALA TYR THR LEU VAL ARG LEU GLN TYR SEQRES 18 B 315 ARG LYS ASN LEU ASN ILE PRO ASP SER MET THR ASP ALA SEQRES 19 B 315 ASP ILE VAL SER SER LEU VAL MET LYS MET ASN ARG ILE SEQRES 20 B 315 HIS LYS LEU GLU GLN THR SER PHE ASP GLU ALA LEU ASN SEQRES 21 B 315 LEU ILE GLY LYS ASP ASN VAL SER GLU ALA TYR VAL GLU SEQRES 22 B 315 LEU ALA ARG ASP ILE GLY SER THR SER LYS THR LYS ARG SEQRES 23 B 315 ASN ASP GLU ALA ILE LEU LYS PHE ARG GLU LEU ILE ALA SEQRES 24 B 315 SER PHE LEU PRO ALA LEU GLU ALA ASP ARG ILE ALA SER SEQRES 25 B 315 ALA HIS VAL SEQRES 1 C 315 MET ALA PRO LYS SER LYS THR THR SER ALA SER SER SER SEQRES 2 C 315 LYS ILE THR PRO GLY GLN MET GLN GLU ASN THR VAL LEU SEQRES 3 C 315 LEU GLY SER GLY SER LYS LEU LYS ALA ILE LYS LEU THR SEQRES 4 C 315 ASN VAL VAL ASN GLY LYS LEU THR HIS PRO GLU THR SER SEQRES 5 C 315 ASP LEU LYS PRO ILE ASP VAL GLU VAL GLN ALA PHE THR SEQRES 6 C 315 SER ALA SER GLN ASN ILE SER ASN PHE THR LEU HIS LYS SEQRES 7 C 315 TYR ARG ASN ILE CYS HIS VAL ASP THR CYS ALA ALA HIS SEQRES 8 C 315 LEU SER LYS SER LYS GLU ASN LYS GLU LYS LEU GLN ALA SEQRES 9 C 315 ARG ASN LEU ARG LEU ILE VAL SER SER ASN GLU PHE LEU SEQRES 10 C 315 VAL VAL VAL LYS GLU LEU ASN ASP SER THR VAL ASP ASN SEQRES 11 C 315 VAL VAL SER PHE ASN LYS ALA CYS ALA ILE MET SER ALA SEQRES 12 C 315 GLY VAL LEU LYS HIS THR PHE ASP GLU GLU PHE ASP TRP SEQRES 13 C 315 LYS LEU SER LYS TYR VAL LYS THR ASN ASN THR THR LYS SEQRES 14 C 315 VAL ILE PRO ASP VAL LYS ILE ILE ASN ARG LEU ALA GLY SEQRES 15 C 315 GLN MET GLY LEU SER ALA GLY ASN PRO TYR TYR TRP MET SEQRES 16 C 315 ILE VAL PRO GLY TYR GLU PHE LEU TYR GLU LEU TYR PRO SEQRES 17 C 315 ALA GLU VAL LEU ALA TYR THR LEU VAL ARG LEU GLN TYR SEQRES 18 C 315 ARG LYS ASN LEU ASN ILE PRO ASP SER MET THR ASP ALA SEQRES 19 C 315 ASP ILE VAL SER SER LEU VAL MET LYS MET ASN ARG ILE SEQRES 20 C 315 HIS LYS LEU GLU GLN THR SER PHE ASP GLU ALA LEU ASN SEQRES 21 C 315 LEU ILE GLY LYS ASP ASN VAL SER GLU ALA TYR VAL GLU SEQRES 22 C 315 LEU ALA ARG ASP ILE GLY SER THR SER LYS THR LYS ARG SEQRES 23 C 315 ASN ASP GLU ALA ILE LEU LYS PHE ARG GLU LEU ILE ALA SEQRES 24 C 315 SER PHE LEU PRO ALA LEU GLU ALA ASP ARG ILE ALA SER SEQRES 25 C 315 ALA HIS VAL SEQRES 1 D 315 MET ALA PRO LYS SER LYS THR THR SER ALA SER SER SER SEQRES 2 D 315 LYS ILE THR PRO GLY GLN MET GLN GLU ASN THR VAL LEU SEQRES 3 D 315 LEU GLY SER GLY SER LYS LEU LYS ALA ILE LYS LEU THR SEQRES 4 D 315 ASN VAL VAL ASN GLY LYS LEU THR HIS PRO GLU THR SER SEQRES 5 D 315 ASP LEU LYS PRO ILE ASP VAL GLU VAL GLN ALA PHE THR SEQRES 6 D 315 SER ALA SER GLN ASN ILE SER ASN PHE THR LEU HIS LYS SEQRES 7 D 315 TYR ARG ASN ILE CYS HIS VAL ASP THR CYS ALA ALA HIS SEQRES 8 D 315 LEU SER LYS SER LYS GLU ASN LYS GLU LYS LEU GLN ALA SEQRES 9 D 315 ARG ASN LEU ARG LEU ILE VAL SER SER ASN GLU PHE LEU SEQRES 10 D 315 VAL VAL VAL LYS GLU LEU ASN ASP SER THR VAL ASP ASN SEQRES 11 D 315 VAL VAL SER PHE ASN LYS ALA CYS ALA ILE MET SER ALA SEQRES 12 D 315 GLY VAL LEU LYS HIS THR PHE ASP GLU GLU PHE ASP TRP SEQRES 13 D 315 LYS LEU SER LYS TYR VAL LYS THR ASN ASN THR THR LYS SEQRES 14 D 315 VAL ILE PRO ASP VAL LYS ILE ILE ASN ARG LEU ALA GLY SEQRES 15 D 315 GLN MET GLY LEU SER ALA GLY ASN PRO TYR TYR TRP MET SEQRES 16 D 315 ILE VAL PRO GLY TYR GLU PHE LEU TYR GLU LEU TYR PRO SEQRES 17 D 315 ALA GLU VAL LEU ALA TYR THR LEU VAL ARG LEU GLN TYR SEQRES 18 D 315 ARG LYS ASN LEU ASN ILE PRO ASP SER MET THR ASP ALA SEQRES 19 D 315 ASP ILE VAL SER SER LEU VAL MET LYS MET ASN ARG ILE SEQRES 20 D 315 HIS LYS LEU GLU GLN THR SER PHE ASP GLU ALA LEU ASN SEQRES 21 D 315 LEU ILE GLY LYS ASP ASN VAL SER GLU ALA TYR VAL GLU SEQRES 22 D 315 LEU ALA ARG ASP ILE GLY SER THR SER LYS THR LYS ARG SEQRES 23 D 315 ASN ASP GLU ALA ILE LEU LYS PHE ARG GLU LEU ILE ALA SEQRES 24 D 315 SER PHE LEU PRO ALA LEU GLU ALA ASP ARG ILE ALA SER SEQRES 25 D 315 ALA HIS VAL HET TRS C 401 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *760(H2 O) HELIX 1 AA1 THR A 74 TYR A 78 5 5 HELIX 2 AA2 HIS A 83 SER A 92 1 10 HELIX 3 AA3 LYS A 93 GLN A 102 1 10 HELIX 4 AA4 LYS A 120 ASP A 124 5 5 HELIX 5 AA5 PHE A 133 LYS A 146 1 14 HELIX 6 AA6 ASN A 177 MET A 183 1 7 HELIX 7 AA7 TYR A 191 ILE A 195 5 5 HELIX 8 AA8 GLY A 198 LEU A 205 5 8 HELIX 9 AA9 TYR A 206 TYR A 220 1 15 HELIX 10 AB1 THR A 231 LYS A 248 1 18 HELIX 11 AB2 SER A 253 GLY A 262 1 10 HELIX 12 AB3 GLY A 262 SER A 281 1 20 HELIX 13 AB4 SER A 281 PHE A 300 1 20 HELIX 14 AB5 PHE A 300 ALA A 312 1 13 HELIX 15 AB6 THR B 64 GLN B 68 5 5 HELIX 16 AB7 THR B 74 ARG B 79 5 6 HELIX 17 AB8 HIS B 83 LYS B 93 1 11 HELIX 18 AB9 LYS B 93 ARG B 104 1 12 HELIX 19 AC1 SER B 132 LYS B 146 1 15 HELIX 20 AC2 ASN B 177 MET B 183 1 7 HELIX 21 AC3 TYR B 191 ILE B 195 5 5 HELIX 22 AC4 GLY B 198 LEU B 205 5 8 HELIX 23 AC5 TYR B 206 TYR B 220 1 15 HELIX 24 AC6 THR B 231 LYS B 248 1 18 HELIX 25 AC7 SER B 253 GLY B 262 1 10 HELIX 26 AC8 GLY B 262 ARG B 275 1 14 HELIX 27 AC9 THR B 280 PHE B 300 1 21 HELIX 28 AD1 PHE B 300 ALA B 310 1 11 HELIX 29 AD2 THR C 74 TYR C 78 5 5 HELIX 30 AD3 HIS C 83 LYS C 93 1 11 HELIX 31 AD4 LYS C 93 ARG C 104 1 12 HELIX 32 AD5 SER C 132 LYS C 146 1 15 HELIX 33 AD6 ASN C 177 MET C 183 1 7 HELIX 34 AD7 TYR C 191 ILE C 195 5 5 HELIX 35 AD8 GLY C 198 LEU C 205 5 8 HELIX 36 AD9 TYR C 206 TYR C 220 1 15 HELIX 37 AE1 THR C 231 LYS C 248 1 18 HELIX 38 AE2 SER C 253 GLY C 262 1 10 HELIX 39 AE3 GLY C 262 ARG C 275 1 14 HELIX 40 AE4 THR C 280 PHE C 300 1 21 HELIX 41 AE5 PHE C 300 SER C 311 1 12 HELIX 42 AE6 THR D 74 ARG D 79 5 6 HELIX 43 AE7 HIS D 83 SER D 92 1 10 HELIX 44 AE8 LYS D 93 GLN D 102 1 10 HELIX 45 AE9 LYS D 120 ASP D 124 5 5 HELIX 46 AF1 PHE D 133 LYS D 146 1 14 HELIX 47 AF2 ASN D 177 MET D 183 1 7 HELIX 48 AF3 TYR D 191 ILE D 195 5 5 HELIX 49 AF4 GLY D 198 LEU D 205 5 8 HELIX 50 AF5 TYR D 206 TYR D 220 1 15 HELIX 51 AF6 THR D 231 LYS D 248 1 18 HELIX 52 AF7 SER D 253 GLY D 262 1 10 HELIX 53 AF8 GLY D 262 SER D 279 1 18 HELIX 54 AF9 SER D 281 ALA D 310 1 30 SHEET 1 AA1 4 ILE A 56 ASP A 57 0 SHEET 2 AA1 4 LEU C 106 ILE C 109 1 O ARG C 107 N ILE A 56 SHEET 3 AA1 4 PHE C 115 VAL C 118 -1 O LEU C 116 N LEU C 108 SHEET 4 AA1 4 VAL C 130 VAL C 131 1 O VAL C 131 N VAL C 117 SHEET 1 AA2 4 VAL A 130 SER A 132 0 SHEET 2 AA2 4 PHE A 115 VAL A 119 1 N VAL A 117 O VAL A 131 SHEET 3 AA2 4 LEU A 106 ILE A 109 -1 N LEU A 108 O LEU A 116 SHEET 4 AA2 4 ILE B 56 ASP B 57 1 O ILE B 56 N ARG A 107 SHEET 1 AA3 2 GLU A 151 ASP A 154 0 SHEET 2 AA3 2 LYS A 159 LYS A 162 -1 O LYS A 159 N ASP A 154 SHEET 1 AA4 4 VAL B 130 VAL B 131 0 SHEET 2 AA4 4 PHE B 115 VAL B 118 1 N VAL B 117 O VAL B 131 SHEET 3 AA4 4 LEU B 106 ILE B 109 -1 N LEU B 108 O LEU B 116 SHEET 4 AA4 4 ILE D 56 ASP D 57 1 O ILE D 56 N ARG B 107 SHEET 1 AA5 2 GLU B 151 ASP B 154 0 SHEET 2 AA5 2 LYS B 159 LYS B 162 -1 O VAL B 161 N GLU B 152 SHEET 1 AA6 4 ILE C 56 VAL C 58 0 SHEET 2 AA6 4 LEU D 106 ILE D 109 1 O ARG D 107 N ILE C 56 SHEET 3 AA6 4 PHE D 115 VAL D 119 -1 O VAL D 118 N LEU D 106 SHEET 4 AA6 4 VAL D 130 SER D 132 1 O VAL D 131 N VAL D 117 SHEET 1 AA7 2 GLU C 151 ASP C 154 0 SHEET 2 AA7 2 LYS C 159 LYS C 162 -1 O VAL C 161 N GLU C 152 SHEET 1 AA8 2 GLU D 151 ASP D 154 0 SHEET 2 AA8 2 LYS D 159 LYS D 162 -1 O VAL D 161 N GLU D 152 SSBOND 1 CYS A 82 CYS A 87 1555 1555 1.99 SSBOND 2 CYS B 82 CYS B 87 1555 1555 2.04 SSBOND 3 CYS C 82 CYS C 87 1555 1555 1.99 SSBOND 4 CYS D 82 CYS D 87 1555 1555 2.05 CRYST1 99.870 96.920 103.520 90.00 111.92 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010013 0.000000 0.004029 0.00000 SCALE2 0.000000 0.010318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010413 0.00000