HEADER HYDROLASE 01-SEP-22 8AXY TITLE STAPHYLOCOCCUS AUREUS ENDONUCLEASE IV ORTHORHOMBIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ENDONUCLEASE 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDODEOXYRIBONUCLEASE IV,ENDONUCLEASE IV; COMPND 5 EC: 3.1.21.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MRSA252; SOURCE 5 GENE: NFO, SAR1634; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDONUCLEASE 4, DNA REPAIR, METALLOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ROUVINSKI,S.KIRILLOV,M.A.SAPER,R.WIENER,M.N.ISUPOV REVDAT 1 13-SEP-23 8AXY 0 JRNL AUTH S.KIRILLOV,M.N.ISUPOV,N.PATERSON,R.WIENER,S.ABELDENOV, JRNL AUTH 2 M.A.SAPER,A.ROUVINSKI JRNL TITL OCTAHEDRALLY COORDINATED IRON IN THE CATALYTIC SITE OF JRNL TITL 2 ENDONUCLEASE IV FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 156428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.975 REMARK 3 FREE R VALUE TEST SET COUNT : 7783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 537 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04200 REMARK 3 B22 (A**2) : 0.79500 REMARK 3 B33 (A**2) : -0.75400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.024 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.025 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.164 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2718 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2591 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3712 ; 1.566 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6047 ; 1.505 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 6.010 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;39.184 ;24.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;12.210 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.411 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3115 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 591 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 563 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 60 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1266 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 376 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.023 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1263 ; 1.126 ; 1.235 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1262 ; 1.124 ; 1.233 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1597 ; 1.566 ; 1.865 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1598 ; 1.566 ; 1.867 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1455 ; 1.685 ; 1.567 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1401 ; 1.562 ; 1.529 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2075 ; 2.187 ; 2.268 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2003 ; 1.978 ; 2.198 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5304 ; 1.488 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8AXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292120928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 156665 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 52.545 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 1.88200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 1XP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: - 0.1 M HEPES PH 7.0 - 2.2 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.42850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.54550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.29050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.54550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.42850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.29050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -200.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 247 H SER A 249 1.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ2 LYS A 274 O4 SO4 A 312 4455 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 14 -122.30 45.62 REMARK 500 ASN A 137 152.65 156.53 REMARK 500 ASN A 169 57.78 -91.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 921 DISTANCE = 6.64 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 68 NE2 REMARK 620 2 HIS A 109 NE2 92.5 REMARK 620 3 GLU A 144 OE1 96.9 85.7 REMARK 620 4 SO4 A 304 O3 159.0 82.5 103.0 REMARK 620 5 HOH A 435 O 97.2 169.1 88.4 90.0 REMARK 620 6 HOH A 486 O 80.8 89.0 174.1 78.7 97.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 144 OE2 REMARK 620 2 ASP A 178 OD2 89.0 REMARK 620 3 HIS A 213 ND1 93.0 101.3 REMARK 620 4 GLU A 258 OE1 172.1 88.6 80.1 REMARK 620 5 SO4 A 304 O1 102.3 87.3 162.6 85.1 REMARK 620 6 HOH A 435 O 90.2 174.2 84.4 93.0 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 181 NE2 REMARK 620 2 ASP A 226 OD1 90.7 REMARK 620 3 HIS A 228 NE2 121.5 101.2 REMARK 620 4 SO4 A 304 S 89.8 157.9 97.3 REMARK 620 5 SO4 A 304 O4 102.5 133.0 109.0 26.4 REMARK 620 6 HOH A 501 O 151.0 71.5 85.2 98.3 76.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8EDD RELATED DB: PDB REMARK 900 8EDD CONTAINS Y33F MUTATION DBREF 8AXY A 1 296 UNP Q6GGE2 END4_STAAR 1 296 SEQRES 1 A 296 MET LEU LEU GLY SER HIS VAL SER MET SER GLY LYS LYS SEQRES 2 A 296 MET LEU GLU GLY SER ALA ILE GLU ALA HIS GLU TYR GLY SEQRES 3 A 296 GLU THR THR PHE MET ILE TYR THR GLY ALA PRO GLN ASN SEQRES 4 A 296 THR ARG ARG LYS SER ILE GLU ASP LEU ASN ILE THR LYS SEQRES 5 A 296 GLY HIS GLU VAL MET GLU LYS TYR GLY LEU SER ASN ILE SEQRES 6 A 296 VAL VAL HIS ALA PRO TYR ILE ILE ASN ILE ALA ASN THR SEQRES 7 A 296 THR LYS PRO GLU THR PHE ASN LEU GLY VAL ASP PHE LEU SEQRES 8 A 296 GLN GLN GLU ILE GLU ARG THR GLN ALA ILE GLY ALA LYS SEQRES 9 A 296 ASP ILE VAL LEU HIS PRO GLY ALA HIS VAL GLY ALA GLY SEQRES 10 A 296 VAL ASP ALA GLY ILE ASN LYS ILE ILE GLU GLY LEU ASN SEQRES 11 A 296 GLU VAL LEU THR ASN ASP ASN ASN VAL ARG ILE ALA LEU SEQRES 12 A 296 GLU THR MET ALA GLY LYS GLY THR GLU ILE GLY ARG SER SEQRES 13 A 296 PHE GLU GLU LEU ALA ARG ILE ILE ASP GLY VAL HIS ASN SEQRES 14 A 296 ASN GLU ARG LEU SER VAL CYS PHE ASP THR CYS HIS THR SEQRES 15 A 296 HIS ASP ALA GLY TYR ASN VAL LYS GLU ASP PHE ASP GLY SEQRES 16 A 296 VAL LEU ASN GLU PHE ASP LYS ILE ILE GLY VAL ASP ARG SEQRES 17 A 296 ILE LYS VAL VAL HIS VAL ASN ASP SER LYS ASN ASP ARG SEQRES 18 A 296 GLY ALA GLN LYS ASP ARG HIS GLU ASN ILE GLY PHE GLY SEQRES 19 A 296 TYR ILE GLY PHE ASP ALA LEU ASN TYR ILE VAL HIS HIS SEQRES 20 A 296 ASP SER PHE LYS ASP ILE PRO LYS ILE LEU GLU THR PRO SEQRES 21 A 296 TYR VAL GLY GLU ASP LYS LYS ASN LYS LYS PRO PRO TYR SEQRES 22 A 296 LYS LEU GLU ILE GLU MET LEU LYS GLN GLN HIS PHE ASP SEQRES 23 A 296 PRO GLU LEU LYS ASN LYS VAL MET GLN GLN HET FE A 301 1 HET FE A 302 1 HET ZN A 303 1 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 311 5 HET SO4 A 312 5 HET SO4 A 313 5 HET SO4 A 314 5 HET SO4 A 315 5 HETNAM FE FE (III) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 FE 2(FE 3+) FORMUL 4 ZN ZN 2+ FORMUL 5 SO4 12(O4 S 2-) FORMUL 17 HOH *521(H2 O) HELIX 1 AA1 MET A 14 TYR A 25 1 12 HELIX 2 AA2 ILE A 45 LEU A 48 5 4 HELIX 3 AA3 ASN A 49 GLY A 61 1 13 HELIX 4 AA4 LYS A 80 GLY A 102 1 23 HELIX 5 AA5 GLY A 117 LEU A 133 1 17 HELIX 6 AA6 SER A 156 VAL A 167 1 12 HELIX 7 AA7 ASN A 169 GLU A 171 5 3 HELIX 8 AA8 THR A 179 GLY A 186 1 8 HELIX 9 AA9 ASP A 192 ILE A 204 1 13 HELIX 10 AB1 GLY A 205 ASP A 207 5 3 HELIX 11 AB2 GLY A 237 HIS A 246 1 10 HELIX 12 AB3 HIS A 247 LYS A 251 5 5 HELIX 13 AB4 ASP A 265 LYS A 269 5 5 HELIX 14 AB5 PRO A 272 GLN A 283 1 12 HELIX 15 AB6 GLU A 288 GLN A 295 1 8 SHEET 1 AA1 8 LEU A 3 SER A 5 0 SHEET 2 AA1 8 LYS A 255 LEU A 257 1 O LEU A 257 N GLY A 4 SHEET 3 AA1 8 ILE A 209 VAL A 214 1 N VAL A 212 O ILE A 256 SHEET 4 AA1 8 LEU A 173 ASP A 178 1 N PHE A 177 O HIS A 213 SHEET 5 AA1 8 ARG A 140 GLU A 144 1 N ILE A 141 O SER A 174 SHEET 6 AA1 8 ASP A 105 LEU A 108 1 N ILE A 106 O ALA A 142 SHEET 7 AA1 8 VAL A 66 HIS A 68 1 N VAL A 67 O VAL A 107 SHEET 8 AA1 8 MET A 31 ILE A 32 1 N ILE A 32 O VAL A 66 SHEET 1 AA2 2 GLY A 111 ALA A 112 0 SHEET 2 AA2 2 GLU A 152 ILE A 153 -1 O ILE A 153 N GLY A 111 SHEET 1 AA3 2 ASP A 216 SER A 217 0 SHEET 2 AA3 2 HIS A 228 GLU A 229 -1 O GLU A 229 N ASP A 216 LINK NE2 HIS A 68 FE FE A 301 1555 1555 2.18 LINK NE2 HIS A 109 FE FE A 301 1555 1555 2.15 LINK OE1 GLU A 144 FE FE A 301 1555 1555 2.12 LINK OE2 GLU A 144 FE FE A 302 1555 1555 2.08 LINK OD2 ASP A 178 FE FE A 302 1555 1555 2.09 LINK NE2 HIS A 181 ZN ZN A 303 1555 1555 2.06 LINK ND1 HIS A 213 FE FE A 302 1555 1555 2.23 LINK OD1 ASP A 226 ZN ZN A 303 1555 1555 1.95 LINK NE2 HIS A 228 ZN ZN A 303 1555 1555 2.05 LINK OE1 GLU A 258 FE FE A 302 1555 1555 2.15 LINK FE FE A 301 O3 SO4 A 304 1555 1555 2.13 LINK FE FE A 301 O HOH A 435 1555 1555 1.93 LINK FE FE A 301 O HOH A 486 1555 1555 2.16 LINK FE FE A 302 O1 SO4 A 304 1555 1555 2.12 LINK FE FE A 302 O HOH A 435 1555 1555 2.01 LINK ZN ZN A 303 S SO4 A 304 1555 1555 2.82 LINK ZN ZN A 303 O4 SO4 A 304 1555 1555 1.75 LINK ZN ZN A 303 O HOH A 501 1555 1555 2.59 CRYST1 38.857 82.581 105.091 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025735 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009516 0.00000