data_8AYG # _entry.id 8AYG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8AYG pdb_00008ayg 10.2210/pdb8ayg/pdb WWPDB D_1292124843 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8AYG _pdbx_database_status.recvd_initial_deposition_date 2022-09-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Parkinson, G.N.' 1 0000-0002-1865-9685 'Alexandrou, E.' 2 0000-0002-5727-6839 'Waller, Z.A.E.' 3 0000-0001-8538-0484 'El-Omari, K.' 4 0000-0003-3506-6045 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of an intramolecular i-motif at the insulin-linked polymorphic region (ILPR)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parkinson, G.N.' 1 0000-0002-1865-9685 primary 'Alexandrou, E.' 2 0000-0002-5727-6839 primary 'Waller, Z.A.E.' 3 0000-0001-8538-0484 primary 'El-Omari, K.' 4 0000-0003-3506-6045 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8AYG _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.415 _cell.length_a_esd ? _cell.length_b 51.513 _cell.length_b_esd ? _cell.length_c 69.847 _cell.length_c_esd ? _cell.volume 170600.522 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8AYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Insulin-linked polymorphic region, ILPR DNA (31-MER)' 9177.918 2 ? ? ? ? 2 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DA)(DT)(DC)(DC)(DC)(DC)(DA)(DC)(DA)(DC)(DC)(DC)(DC)(DT)(DA)(DT)(DC)(DC)(DC) (DC)(DA)(DC)(DA)(DC)(DC)(DC)(DC)(DT)(DA)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can TATCCCCACACCCCTATCCCCACACCCCTAT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DT n 1 4 DC n 1 5 DC n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DC n 1 10 DA n 1 11 DC n 1 12 DC n 1 13 DC n 1 14 DC n 1 15 DT n 1 16 DA n 1 17 DT n 1 18 DC n 1 19 DC n 1 20 DC n 1 21 DC n 1 22 DA n 1 23 DC n 1 24 DA n 1 25 DC n 1 26 DC n 1 27 DC n 1 28 DC n 1 29 DT n 1 30 DA n 1 31 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8AYG _struct_ref.pdbx_db_accession 8AYG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8AYG A 1 ? 31 ? 8AYG 1 ? 31 ? 1 31 2 1 8AYG B 1 ? 31 ? 8AYG 1 ? 31 ? 1 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8AYG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.06 _exptl_crystal.description pseudo-hexagonal _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 283.15 _exptl_crystal_grow.temp_details 'crystals can also be formed at 277.15K' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2-Methyl-2,4-pentanediol (MPD), sodium chloride, sodium cacodylate, spermine (tetrachloride)' _exptl_crystal_grow.pdbx_pH_range '5.5 - 6.4' # _diffrn.ambient_environment ? _diffrn.ambient_temp 75 _diffrn.ambient_temp_details 'in vacuum (I23)' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-12-02 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator M _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 2.4797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I23' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 2.4797 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I23 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 76.91 _reflns.entry_id 8AYG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.250 _reflns.d_resolution_low 47.420 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8133 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.200 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 44.500 _reflns.pdbx_Rmerge_I_obs 0.167 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 30.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 17192 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.169 _reflns.pdbx_Rpim_I_all 0.024 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 362297 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.250 2.320 ? ? 14886 ? ? ? 657 88.000 ? ? ? ? 1.966 ? ? ? ? ? ? ? ? 22.700 ? ? ? 1.700 2.014 0.417 ? 1 1 0.748 ? ? ? ? ? ? ? ? ? ? 9.000 47.420 ? ? 7448 ? ? ? 170 99.800 ? ? ? ? 0.124 ? ? ? ? ? ? ? ? 43.800 ? ? ? 66.200 0.125 0.019 ? 2 1 0.997 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 80.06 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8AYG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.25 _refine.ls_d_res_low 41.46 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7957 _refine.ls_number_reflns_R_free 423 _refine.ls_number_reflns_R_work 7534 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.14 _refine.ls_percent_reflns_R_free 5.32 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2513 _refine.ls_R_factor_R_free 0.2948 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2487 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 45.5920 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5215 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 41.46 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 1234 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1212 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0132 ? 1348 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1126 ? 2062 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0614 ? 246 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0073 ? 62 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 31.8235 ? 612 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.25 2.58 . . 148 2331 89.08 . . . 0.4622 . 0.3748 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.58 3.24 . . 126 2434 91.27 . . . 0.4611 . 0.3814 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.25 41.46 . . 149 2769 98.78 . . . 0.2512 . 0.2179 . . . . . . . . . . . # _struct.entry_id 8AYG _struct.title 'Crystal structure of an intramolecular i-motif at the insulin-linked polymorphic region (ILPR)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8AYG _struct_keywords.text 'i-motif, promoter, DNA, insulin-linked polymorphic region' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DA 24 N6 ? ? A DA 2 B DA 24 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DA 24 N7 ? ? A DA 2 B DA 24 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DT 17 O4 ? ? A DT 3 A DT 17 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DT 17 N3 ? ? A DT 3 A DT 17 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog5 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DC 18 O2 ? ? A DC 4 A DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog6 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DC 18 N4 ? ? A DC 4 A DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog7 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DC 19 O2 ? ? A DC 5 A DC 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog8 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DC 19 N4 ? ? A DC 5 A DC 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog9 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DC 20 O2 ? ? A DC 6 A DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog10 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DC 20 N4 ? ? A DC 6 A DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog11 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DC 21 O2 ? ? A DC 7 A DC 21 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog12 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DC 21 N4 ? ? A DC 7 A DC 21 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog13 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DA 22 N1 ? ? A DA 10 A DA 22 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog14 hydrog ? ? A DA 10 N7 ? ? ? 1_555 A DA 22 N6 ? ? A DA 10 A DA 22 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog15 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DC 25 O2 ? ? A DC 11 A DC 25 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog16 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DC 25 N4 ? ? A DC 11 A DC 25 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog17 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DC 26 O2 ? ? A DC 12 A DC 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog18 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DC 26 N4 ? ? A DC 12 A DC 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog19 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DC 27 O2 ? ? A DC 13 A DC 27 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog20 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DC 27 N4 ? ? A DC 13 A DC 27 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog21 hydrog ? ? A DC 14 N4 ? ? ? 1_555 A DC 28 O2 ? ? A DC 14 A DC 28 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog22 hydrog ? ? A DC 14 O2 ? ? ? 1_555 A DC 28 N4 ? ? A DC 14 A DC 28 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog23 hydrog ? ? A DA 24 N6 ? ? ? 1_555 B DA 2 N1 ? ? A DA 24 B DA 2 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog24 hydrog ? ? A DA 24 N7 ? ? ? 1_555 B DA 2 N6 ? ? A DA 24 B DA 2 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog25 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DT 17 O4 ? ? B DT 3 B DT 17 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog26 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DT 17 N3 ? ? B DT 3 B DT 17 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog27 hydrog ? ? B DC 4 N4 ? ? ? 1_555 B DC 18 O2 ? ? B DC 4 B DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog28 hydrog ? ? B DC 4 O2 ? ? ? 1_555 B DC 18 N4 ? ? B DC 4 B DC 18 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog29 hydrog ? ? B DC 5 N4 ? ? ? 1_555 B DC 19 O2 ? ? B DC 5 B DC 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog30 hydrog ? ? B DC 5 O2 ? ? ? 1_555 B DC 19 N4 ? ? B DC 5 B DC 19 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog31 hydrog ? ? B DC 6 N4 ? ? ? 1_555 B DC 20 O2 ? ? B DC 6 B DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog32 hydrog ? ? B DC 6 O2 ? ? ? 1_555 B DC 20 N4 ? ? B DC 6 B DC 20 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog33 hydrog ? ? B DC 7 N4 ? ? ? 1_555 B DC 21 O2 ? ? B DC 7 B DC 21 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog34 hydrog ? ? B DC 7 O2 ? ? ? 1_555 B DC 21 N4 ? ? B DC 7 B DC 21 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog35 hydrog ? ? B DA 8 N6 ? ? ? 1_555 B DA 22 N1 ? ? B DA 8 B DA 22 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog36 hydrog ? ? B DA 8 N7 ? ? ? 1_555 B DA 22 N6 ? ? B DA 8 B DA 22 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog37 hydrog ? ? B DC 11 N4 ? ? ? 1_555 B DC 25 O2 ? ? B DC 11 B DC 25 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog38 hydrog ? ? B DC 11 O2 ? ? ? 1_555 B DC 25 N4 ? ? B DC 11 B DC 25 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog39 hydrog ? ? B DC 12 N4 ? ? ? 1_555 B DC 26 O2 ? ? B DC 12 B DC 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog40 hydrog ? ? B DC 12 O2 ? ? ? 1_555 B DC 26 N4 ? ? B DC 12 B DC 26 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog41 hydrog ? ? B DC 13 N4 ? ? ? 1_555 B DC 27 O2 ? ? B DC 13 B DC 27 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog42 hydrog ? ? B DC 13 O2 ? ? ? 1_555 B DC 27 N4 ? ? B DC 13 B DC 27 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog43 hydrog ? ? B DC 14 N4 ? ? ? 1_555 B DC 28 O2 ? ? B DC 14 B DC 28 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog44 hydrog ? ? B DC 14 O2 ? ? ? 1_555 B DC 28 N4 ? ? B DC 14 B DC 28 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8AYG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.021090 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019413 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014317 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DC 14 14 14 DC DC A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DA 16 16 16 DA DA A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DC 18 18 18 DC DC A . n A 1 19 DC 19 19 19 DC DC A . n A 1 20 DC 20 20 20 DC DC A . n A 1 21 DC 21 21 21 DC DC A . n A 1 22 DA 22 22 22 DA DA A . n A 1 23 DC 23 23 23 DC DC A . n A 1 24 DA 24 24 24 DA DA A . n A 1 25 DC 25 25 25 DC DC A . n A 1 26 DC 26 26 26 DC DC A . n A 1 27 DC 27 27 27 DC DC A . n A 1 28 DC 28 28 28 DC DC A . n A 1 29 DT 29 29 29 DT DT A . n A 1 30 DA 30 30 30 DA DA A . n A 1 31 DT 31 31 31 DT DT A . n B 1 1 DT 1 1 1 DT DT B . n B 1 2 DA 2 2 2 DA DA B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DA 8 8 8 DA DA B . n B 1 9 DC 9 9 9 DC DC B . n B 1 10 DA 10 10 10 DA DA B . n B 1 11 DC 11 11 11 DC DC B . n B 1 12 DC 12 12 12 DC DC B . n B 1 13 DC 13 13 13 DC DC B . n B 1 14 DC 14 14 14 DC DC B . n B 1 15 DT 15 15 15 DT DT B . n B 1 16 DA 16 16 16 DA DA B . n B 1 17 DT 17 17 17 DT DT B . n B 1 18 DC 18 18 18 DC DC B . n B 1 19 DC 19 19 19 DC DC B . n B 1 20 DC 20 20 20 DC DC B . n B 1 21 DC 21 21 21 DC DC B . n B 1 22 DA 22 22 22 DA DA B . n B 1 23 DC 23 23 23 DC DC B . n B 1 24 DA 24 24 24 DA DA B . n B 1 25 DC 25 25 25 DC DC B . n B 1 26 DC 26 26 26 DC DC B . n B 1 27 DC 27 27 27 DC DC B . n B 1 28 DC 28 28 28 DC DC B . n B 1 29 DT 29 29 29 DT DT B . n B 1 30 DA 30 30 30 DA DA B . n B 1 31 DT 31 31 31 DT DT B . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email z.waller@ucl.ac.uk _pdbx_contact_author.name_first Zoe _pdbx_contact_author.name_last Waller _pdbx_contact_author.name_mi A.E. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8538-0484 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 25 HOH HOH A . C 2 HOH 2 102 3 HOH HOH A . C 2 HOH 3 103 32 HOH HOH A . C 2 HOH 4 104 42 HOH HOH A . C 2 HOH 5 105 44 HOH HOH A . C 2 HOH 6 106 52 HOH HOH A . C 2 HOH 7 107 29 HOH HOH A . C 2 HOH 8 108 40 HOH HOH A . C 2 HOH 9 109 13 HOH HOH A . C 2 HOH 10 110 51 HOH HOH A . D 2 HOH 1 101 108 HOH HOH B . D 2 HOH 2 102 125 HOH HOH B . D 2 HOH 3 103 60 HOH HOH B . D 2 HOH 4 104 132 HOH HOH B . D 2 HOH 5 105 109 HOH HOH B . D 2 HOH 6 106 107 HOH HOH B . D 2 HOH 7 107 129 HOH HOH B . D 2 HOH 8 108 78 HOH HOH B . D 2 HOH 9 109 85 HOH HOH B . D 2 HOH 10 110 58 HOH HOH B . D 2 HOH 11 111 128 HOH HOH B . D 2 HOH 12 112 100 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _phasing.method MAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.7 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2.multiplex ? ? ? . 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 107 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 111 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 21 ? ? "C3'" A DC 21 ? ? 1.383 1.419 -0.036 0.006 N 2 1 "O3'" A DC 23 ? ? "C3'" A DC 23 ? ? 1.382 1.419 -0.037 0.006 N 3 1 "O3'" A DC 25 ? ? "C3'" A DC 25 ? ? 1.378 1.419 -0.041 0.006 N 4 1 "O3'" B DC 5 ? ? "C3'" B DC 5 ? ? 1.363 1.419 -0.056 0.006 N 5 1 "O3'" B DC 13 ? ? "C3'" B DC 13 ? ? 1.379 1.419 -0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.24 108.30 1.94 0.30 N 2 1 "O4'" B DA 30 ? ? "C4'" B DA 30 ? ? "C3'" B DA 30 ? ? 101.83 104.50 -2.67 0.40 N 3 1 "O4'" B DA 30 ? ? "C1'" B DA 30 ? ? N9 B DA 30 ? ? 110.36 108.30 2.06 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DT OP3 O N N 71 DT P P N N 72 DT OP1 O N N 73 DT OP2 O N N 74 DT "O5'" O N N 75 DT "C5'" C N N 76 DT "C4'" C N R 77 DT "O4'" O N N 78 DT "C3'" C N S 79 DT "O3'" O N N 80 DT "C2'" C N N 81 DT "C1'" C N R 82 DT N1 N N N 83 DT C2 C N N 84 DT O2 O N N 85 DT N3 N N N 86 DT C4 C N N 87 DT O4 O N N 88 DT C5 C N N 89 DT C7 C N N 90 DT C6 C N N 91 DT HOP3 H N N 92 DT HOP2 H N N 93 DT "H5'" H N N 94 DT "H5''" H N N 95 DT "H4'" H N N 96 DT "H3'" H N N 97 DT "HO3'" H N N 98 DT "H2'" H N N 99 DT "H2''" H N N 100 DT "H1'" H N N 101 DT H3 H N N 102 DT H71 H N N 103 DT H72 H N N 104 DT H73 H N N 105 DT H6 H N N 106 HOH O O N N 107 HOH H1 H N N 108 HOH H2 H N N 109 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DT OP3 P sing N N 74 DT OP3 HOP3 sing N N 75 DT P OP1 doub N N 76 DT P OP2 sing N N 77 DT P "O5'" sing N N 78 DT OP2 HOP2 sing N N 79 DT "O5'" "C5'" sing N N 80 DT "C5'" "C4'" sing N N 81 DT "C5'" "H5'" sing N N 82 DT "C5'" "H5''" sing N N 83 DT "C4'" "O4'" sing N N 84 DT "C4'" "C3'" sing N N 85 DT "C4'" "H4'" sing N N 86 DT "O4'" "C1'" sing N N 87 DT "C3'" "O3'" sing N N 88 DT "C3'" "C2'" sing N N 89 DT "C3'" "H3'" sing N N 90 DT "O3'" "HO3'" sing N N 91 DT "C2'" "C1'" sing N N 92 DT "C2'" "H2'" sing N N 93 DT "C2'" "H2''" sing N N 94 DT "C1'" N1 sing N N 95 DT "C1'" "H1'" sing N N 96 DT N1 C2 sing N N 97 DT N1 C6 sing N N 98 DT C2 O2 doub N N 99 DT C2 N3 sing N N 100 DT N3 C4 sing N N 101 DT N3 H3 sing N N 102 DT C4 O4 doub N N 103 DT C4 C5 sing N N 104 DT C5 C7 sing N N 105 DT C5 C6 doub N N 106 DT C7 H71 sing N N 107 DT C7 H72 sing N N 108 DT C7 H73 sing N N 109 DT C6 H6 sing N N 110 HOH O H1 sing N N 111 HOH O H2 sing N N 112 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8AYG 'double helix' 8AYG 'parallel strands' 8AYG 'mismatched base pair' 8AYG 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DA 24 1_555 3.843 1.323 0.796 -6.950 40.482 -113.218 1 A_DA2:DA24_B A 2 ? B 24 ? 5 4 1 A DT 3 1_555 A DT 17 1_555 1.718 -2.009 -1.027 -19.607 10.686 178.125 2 A_DT3:DT17_A A 3 ? A 17 ? 12 2 1 A DC 14 1_555 A DC 28 1_555 1.838 0.591 0.079 13.389 10.043 176.208 3 A_DC14:DC28_A A 14 ? A 28 ? 15 2 1 A DC 4 1_555 A DC 18 1_555 -1.825 -1.058 0.019 6.820 -8.967 -178.327 4 A_DC4:DC18_A A 4 ? A 18 ? 15 2 1 A DC 13 1_555 A DC 27 1_555 -1.965 -1.009 -0.006 -6.556 -5.349 -178.809 5 A_DC13:DC27_A A 13 ? A 27 ? 15 2 1 A DC 5 1_555 A DC 19 1_555 1.926 1.236 -0.095 -4.847 13.264 177.628 6 A_DC5:DC19_A A 5 ? A 19 ? 15 2 1 A DC 12 1_555 A DC 26 1_555 -2.058 -1.115 0.018 3.367 -3.080 -178.217 7 A_DC12:DC26_A A 12 ? A 26 ? 15 2 1 A DC 6 1_555 A DC 20 1_555 -1.848 -1.159 -0.042 -0.847 -4.712 -178.788 8 A_DC6:DC20_A A 6 ? A 20 ? 15 2 1 A DC 11 1_555 A DC 25 1_555 1.873 0.958 -0.067 -5.297 0.475 179.701 9 A_DC11:DC25_A A 11 ? A 25 ? 15 2 1 A DC 7 1_555 A DC 21 1_555 -1.851 -0.726 -0.162 -3.706 -10.880 -178.725 10 A_DC7:DC21_A A 7 ? A 21 ? 15 2 1 A DA 10 1_555 A DA 22 1_555 -3.773 1.520 -0.685 -8.227 -7.583 -108.645 11 A_DA10:DA22_A A 10 ? A 22 ? 5 4 1 A DA 24 1_555 B DA 2 1_555 -4.663 0.102 0.623 3.278 26.000 -102.297 12 A_DA24:DA2_B A 24 ? B 2 ? 5 4 1 B DA 22 1_555 B DA 8 1_555 4.008 1.206 -0.607 19.981 -15.096 -94.440 13 B_DA22:DA8_B B 22 ? B 8 ? 5 4 1 B DC 7 1_555 B DC 21 1_555 1.984 0.650 0.105 12.631 -0.756 173.165 14 B_DC7:DC21_B B 7 ? B 21 ? 15 2 1 B DC 11 1_555 B DC 25 1_555 -1.783 -1.346 0.381 9.279 -6.234 -169.633 15 B_DC11:DC25_B B 11 ? B 25 ? 15 2 1 B DC 6 1_555 B DC 20 1_555 2.093 1.023 0.363 7.172 2.263 175.400 16 B_DC6:DC20_B B 6 ? B 20 ? 15 2 1 B DC 12 1_555 B DC 26 1_555 -1.814 -1.194 0.177 7.521 -5.751 -177.126 17 B_DC12:DC26_B B 12 ? B 26 ? 15 2 1 B DC 5 1_555 B DC 19 1_555 1.947 1.236 0.291 -6.023 5.720 176.152 18 B_DC5:DC19_B B 5 ? B 19 ? 15 2 1 B DC 13 1_555 B DC 27 1_555 1.944 1.169 0.288 9.364 4.931 176.517 19 B_DC13:DC27_B B 13 ? B 27 ? 15 2 1 B DC 4 1_555 B DC 18 1_555 -1.872 -1.561 -0.015 16.001 2.580 -177.873 20 B_DC4:DC18_B B 4 ? B 18 ? 15 2 1 B DC 14 1_555 B DC 28 1_555 2.026 0.707 -0.410 11.883 -4.244 174.521 21 B_DC14:DC28_B B 14 ? B 28 ? 15 2 1 B DT 3 1_555 B DT 17 1_555 -1.712 1.584 -0.122 17.946 -10.472 -177.502 22 B_DT3:DT17_B B 3 ? B 17 ? 12 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 3 1_555 A DT 17 1_555 A DC 14 1_555 A DC 28 1_555 -3.030 2.079 -0.084 101.694 137.104 131.736 1.059 1.502 -0.132 68.877 -51.088 176.202 1 AA_DT3DC14:DC28DT17_AA A 3 ? A 17 ? A 14 ? A 28 ? 1 A DC 14 1_555 A DC 28 1_555 A DC 4 1_555 A DC 18 1_555 -2.159 -1.535 0.026 100.000 -142.977 -125.436 0.772 -1.077 0.014 71.740 50.176 -177.469 2 AA_DC14DC4:DC18DC28_AA A 14 ? A 28 ? A 4 ? A 18 ? 1 A DC 4 1_555 A DC 18 1_555 A DC 13 1_555 A DC 27 1_555 -2.319 2.624 0.161 131.721 120.969 35.989 1.245 1.233 0.113 60.755 -66.156 178.897 3 AA_DC4DC13:DC27DC18_AA A 4 ? A 18 ? A 13 ? A 27 ? 1 A DC 13 1_555 A DC 27 1_555 A DC 5 1_555 A DC 19 1_555 -2.201 -1.427 0.034 99.572 -145.209 154.090 -0.711 1.102 0.018 -72.646 -49.814 179.119 4 AA_DC13DC5:DC19DC27_AA A 13 ? A 27 ? A 5 ? A 19 ? 1 A DC 5 1_555 A DC 19 1_555 A DC 12 1_555 A DC 26 1_555 -2.657 -2.392 -0.119 -122.694 130.548 158.481 -1.188 1.336 -0.102 65.279 61.352 179.842 5 AA_DC5DC12:DC26DC19_AA A 5 ? A 19 ? A 12 ? A 26 ? 1 A DC 12 1_555 A DC 26 1_555 A DC 6 1_555 A DC 20 1_555 1.537 -2.454 -0.069 145.055 100.051 -25.501 1.218 0.782 0.110 -50.863 73.742 -176.307 6 AA_DC12DC6:DC20DC26_AA A 12 ? A 26 ? A 6 ? A 20 ? 1 A DC 6 1_555 A DC 20 1_555 A DC 11 1_555 A DC 25 1_555 2.395 2.286 -0.050 120.607 -127.848 45.816 1.123 -1.218 -0.038 -64.866 -61.192 176.094 7 AA_DC6DC11:DC25DC20_AA A 6 ? A 20 ? A 11 ? A 25 ? 1 A DC 11 1_555 A DC 25 1_555 A DC 7 1_555 A DC 21 1_555 2.265 1.624 0.071 -103.401 143.944 137.405 0.802 -1.140 0.065 72.049 51.756 178.995 8 AA_DC11DC7:DC21DC25_AA A 11 ? A 25 ? A 7 ? A 21 ? 1 A DC 7 1_555 A DC 21 1_555 A DA 10 1_555 A DA 22 1_555 3.575 -1.411 1.504 -42.900 -156.491 139.200 -0.444 -1.862 1.555 -78.774 21.595 173.840 9 AA_DC7DA10:DA22DC21_AA A 7 ? A 21 ? A 10 ? A 22 ? 1 B DA 22 1_555 B DA 8 1_555 B DC 7 1_555 B DC 21 1_555 1.232 -0.191 -3.293 -2.389 -1.762 20.405 -1.325 -2.368 -3.385 -4.939 6.699 20.618 10 BB_DA22DC7:DC21DA8_BB B 22 ? B 8 ? B 7 ? B 21 ? 1 B DC 7 1_555 B DC 21 1_555 B DC 11 1_555 B DC 25 1_555 -2.561 -1.690 -0.165 100.815 -141.694 81.935 -0.911 1.235 -0.189 -71.702 -51.016 175.394 11 BB_DC7DC11:DC25DC21_BB B 7 ? B 21 ? B 11 ? B 25 ? 1 B DC 11 1_555 B DC 25 1_555 B DC 6 1_555 B DC 20 1_555 -2.748 -1.997 -0.111 -114.040 133.377 -22.706 1.123 -1.270 -0.285 -68.067 -58.198 -175.572 12 BB_DC11DC6:DC20DC25_BB B 11 ? B 25 ? B 6 ? B 20 ? 1 B DC 6 1_555 B DC 20 1_555 B DC 12 1_555 B DC 26 1_555 -2.577 -1.366 0.034 96.518 -145.886 42.603 -0.746 1.249 -0.251 -74.290 -49.150 175.271 13 BB_DC6DC12:DC26DC20_BB B 6 ? B 20 ? B 12 ? B 26 ? 1 B DC 12 1_555 B DC 26 1_555 B DC 5 1_555 B DC 19 1_555 -2.736 -2.074 0.000 -115.584 131.806 98.234 -1.060 1.349 0.160 66.333 58.169 176.929 14 BB_DC12DC5:DC19DC26_BB B 12 ? B 26 ? B 5 ? B 19 ? 1 B DC 5 1_555 B DC 19 1_555 B DC 13 1_555 B DC 27 1_555 1.080 -2.634 -0.045 144.417 95.909 -95.527 1.286 0.588 0.341 -48.430 72.925 -175.540 15 BB_DC5DC13:DC27DC19_BB B 5 ? B 19 ? B 13 ? B 27 ? 1 B DC 13 1_555 B DC 27 1_555 B DC 4 1_555 B DC 18 1_555 2.245 2.233 -0.109 109.934 -134.150 -96.646 -1.115 1.125 0.120 67.716 55.492 -175.640 16 BB_DC13DC4:DC18DC27_BB B 13 ? B 27 ? B 4 ? B 18 ? 1 B DC 4 1_555 B DC 18 1_555 B DC 14 1_555 B DC 28 1_555 -2.717 -1.913 0.199 99.958 -144.062 105.203 -0.905 1.395 0.172 -72.424 -50.252 177.172 17 BB_DC4DC14:DC28DC18_BB B 4 ? B 18 ? B 14 ? B 28 ? 1 B DC 14 1_555 B DC 28 1_555 B DT 3 1_555 B DT 17 1_555 -2.185 -2.609 0.027 -134.909 105.604 -92.309 1.310 -1.089 -0.058 -53.545 -68.404 -173.994 18 BB_DC14DT3:DT17DC28_BB B 14 ? B 28 ? B 3 ? B 17 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 'grand code: 565921, award:177365' _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #