HEADER TRANSPORT PROTEIN 02-SEP-22 8AYP TITLE NAK C-DI MUTANT WITH RB+ AND BA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM CHANNEL PROTEIN; COMPND 3 CHAIN: A, C, D, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS ATCC 14579; SOURCE 3 ORGANISM_TAXID: 226900; SOURCE 4 STRAIN: ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / SOURCE 5 NRRL B-3711; SOURCE 6 GENE: BC_0669; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS ION CHANNEL, PROKARYOTE, MEMBRANE PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MINNIBERGER,A.J.R.PLESTED REVDAT 3 07-FEB-24 8AYP 1 REMARK REVDAT 2 08-MAR-23 8AYP 1 JRNL REVDAT 1 22-FEB-23 8AYP 0 JRNL AUTH F.K.SCHACKERT,J.BIEDERMANN,S.ABDOLVAND,S.MINNIBERGER,C.SONG, JRNL AUTH 2 A.J.R.PLESTED,P.CARLONI,H.SUN JRNL TITL MECHANISM OF CALCIUM PERMEATION IN A GLUTAMATE RECEPTOR ION JRNL TITL 2 CHANNEL. JRNL REF J.CHEM.INF.MODEL. V. 63 1293 2023 JRNL REFN ESSN 1549-960X JRNL PMID 36758214 JRNL DOI 10.1021/ACS.JCIM.2C01494 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6800 - 4.3600 0.99 2711 143 0.2125 0.2598 REMARK 3 2 4.3600 - 3.4600 0.99 2614 138 0.1931 0.2231 REMARK 3 3 3.4600 - 3.0300 1.00 2611 137 0.2075 0.2227 REMARK 3 4 3.0300 - 2.7500 1.00 2573 136 0.2257 0.2890 REMARK 3 5 2.7500 - 2.5500 0.99 2561 135 0.2413 0.2584 REMARK 3 6 2.5500 - 2.4000 1.00 2560 134 0.2639 0.3466 REMARK 3 7 2.4000 - 2.2800 1.00 2564 135 0.3044 0.3638 REMARK 3 8 2.2800 - 2.1800 0.99 2531 133 0.3228 0.3729 REMARK 3 9 2.1800 - 2.1000 0.98 2533 133 0.3428 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.305 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3113 REMARK 3 ANGLE : 0.663 4264 REMARK 3 CHIRALITY : 0.043 538 REMARK 3 PLANARITY : 0.006 478 REMARK 3 DIHEDRAL : 8.005 411 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 21 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1276 -22.1823 -3.9839 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.3551 REMARK 3 T33: 0.3317 T12: 0.0386 REMARK 3 T13: 0.0215 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 3.5503 L22: 2.1111 REMARK 3 L33: 4.1236 L12: -0.0771 REMARK 3 L13: -0.4427 L23: -0.6173 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.2599 S13: 0.3880 REMARK 3 S21: 0.2117 S22: -0.0166 S23: -0.1314 REMARK 3 S31: -0.2515 S32: -0.1754 S33: -0.0035 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 21 THROUGH 108) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1254 -22.1760 -19.8246 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.4130 REMARK 3 T33: 0.3895 T12: 0.0000 REMARK 3 T13: -0.0306 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 2.9433 L22: 1.1670 REMARK 3 L33: 4.0368 L12: 0.4947 REMARK 3 L13: 0.3674 L23: 0.8666 REMARK 3 S TENSOR REMARK 3 S11: -0.1606 S12: -0.0567 S13: 0.4411 REMARK 3 S21: -0.0410 S22: 0.0425 S23: 0.1494 REMARK 3 S31: -0.0816 S32: -0.4039 S33: 0.1040 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 21 THROUGH 113) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0222 -23.1256 9.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.6662 T22: 0.4123 REMARK 3 T33: 0.3717 T12: -0.1893 REMARK 3 T13: 0.1405 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.7682 L22: 0.7251 REMARK 3 L33: 2.9168 L12: -0.3086 REMARK 3 L13: 1.0324 L23: 0.3243 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: 0.3313 S13: 0.3151 REMARK 3 S21: 0.0164 S22: 0.0746 S23: 0.0003 REMARK 3 S31: -0.9338 S32: 0.3276 S33: -0.1594 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 21 THROUGH 113) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2596 -23.0712 6.0727 REMARK 3 T TENSOR REMARK 3 T11: 0.6545 T22: 0.4433 REMARK 3 T33: 0.3884 T12: 0.2058 REMARK 3 T13: 0.0980 T23: 0.1402 REMARK 3 L TENSOR REMARK 3 L11: 3.4793 L22: 1.2356 REMARK 3 L33: 1.9543 L12: -0.6128 REMARK 3 L13: -0.4122 L23: -0.7616 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: 0.2151 S13: 0.3826 REMARK 3 S21: 0.1074 S22: 0.1905 S23: 0.0729 REMARK 3 S31: -0.9474 S32: -0.4850 S33: -0.0710 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8AYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.098 REMARK 200 RESOLUTION RANGE LOW (A) : 44.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11530 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3E86 REMARK 200 REMARK 200 REMARK: THIN PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES (NAOH), 40% V/V MPD (2 REMARK 280 -METHYL-2,4-PENTANEDIOL RACEMATE), PH 6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.02100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.02100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.08550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.74750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.08550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.74750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.02100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.08550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.74750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.02100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.08550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.74750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -349.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -34.02100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -495.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -68.17100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.02100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 RB RB A 203 LIES ON A SPECIAL POSITION. REMARK 375 RB RB A 204 LIES ON A SPECIAL POSITION. REMARK 375 BA BA A 205 LIES ON A SPECIAL POSITION. REMARK 375 BA BA A 206 LIES ON A SPECIAL POSITION. REMARK 375 RB RB C 210 LIES ON A SPECIAL POSITION. REMARK 375 BA BA C 211 LIES ON A SPECIAL POSITION. REMARK 375 BA BA D 210 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 TRP A 19 REMARK 465 LYS A 20 REMARK 465 ASN A 109 REMARK 465 LEU A 110 REMARK 465 VAL A 111 REMARK 465 PRO A 112 REMARK 465 ARG A 113 REMARK 465 MET C 18 REMARK 465 TRP C 19 REMARK 465 LYS C 20 REMARK 465 MET D 18 REMARK 465 TRP D 19 REMARK 465 LYS D 20 REMARK 465 MET B 18 REMARK 465 TRP B 19 REMARK 465 LYS B 20 REMARK 465 ASN B 109 REMARK 465 LEU B 110 REMARK 465 VAL B 111 REMARK 465 PRO B 112 REMARK 465 ARG B 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 22 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 76 OD2 ASP D 52 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP C 52 NZ LYS D 76 3455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 101 -58.86 -122.38 REMARK 500 VAL C 101 -56.51 -120.08 REMARK 500 THR D 44 -71.56 -86.98 REMARK 500 VAL B 101 -41.08 -133.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB A 203 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 63 O REMARK 620 2 THR A 63 OG1 62.4 REMARK 620 3 THR A 63 O 0.0 62.4 REMARK 620 4 THR A 63 OG1 62.4 0.0 62.4 REMARK 620 5 THR B 63 OG1 101.9 85.1 101.9 85.1 REMARK 620 6 THR B 63 OG1 101.9 85.1 101.9 85.1 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB A 204 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 63 O REMARK 620 2 THR A 63 O 0.0 REMARK 620 3 VAL A 64 O 71.8 71.8 REMARK 620 4 VAL A 64 O 71.8 71.8 0.0 REMARK 620 5 THR B 63 O 66.3 66.3 130.8 130.8 REMARK 620 6 THR B 63 O 66.3 66.3 130.8 130.8 0.0 REMARK 620 7 VAL B 64 O 83.5 83.5 78.9 78.9 72.0 72.0 REMARK 620 8 VAL B 64 O 83.5 83.5 78.9 78.9 72.0 72.0 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 205 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 302 O REMARK 620 2 HOH B 302 O 138.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 206 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 320 O REMARK 620 2 HOH A 320 O 79.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB C 210 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 63 O REMARK 620 2 THR C 63 OG1 61.1 REMARK 620 3 THR C 63 O 0.0 61.1 REMARK 620 4 THR C 63 OG1 61.1 0.0 61.1 REMARK 620 5 THR D 63 O 58.7 97.2 58.7 97.2 REMARK 620 6 THR D 63 OG1 106.8 87.8 106.8 87.8 63.1 REMARK 620 7 THR D 63 O 58.7 97.2 58.7 97.2 0.0 63.1 REMARK 620 8 THR D 63 OG1 106.8 87.8 106.8 87.8 63.1 0.0 63.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB D 209 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 63 O REMARK 620 2 THR C 63 O 0.0 REMARK 620 3 VAL C 64 O 63.6 63.6 REMARK 620 4 THR D 63 O 62.8 62.8 123.4 REMARK 620 5 VAL D 64 O 78.2 78.2 72.1 80.7 REMARK 620 6 VAL D 64 O 78.2 78.2 72.1 80.7 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA D 210 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 302 O REMARK 620 2 HOH C 302 O 138.6 REMARK 620 N 1 DBREF 8AYP A 19 109 UNP Q81HW2 Q81HW2_BACCR 19 110 DBREF 8AYP C 19 109 UNP Q81HW2 Q81HW2_BACCR 19 110 DBREF 8AYP D 19 109 UNP Q81HW2 Q81HW2_BACCR 19 110 DBREF 8AYP B 19 109 UNP Q81HW2 Q81HW2_BACCR 19 110 SEQADV 8AYP MET A 18 UNP Q81HW2 INITIATING METHIONINE SEQADV 8AYP CYS A 66 UNP Q81HW2 ASP 66 ENGINEERED MUTATION SEQADV 8AYP A UNP Q81HW2 GLY 67 DELETION SEQADV 8AYP ASP A 67 UNP Q81HW2 ASN 68 ENGINEERED MUTATION SEQADV 8AYP ILE A 68 UNP Q81HW2 PHE 69 ENGINEERED MUTATION SEQADV 8AYP LEU A 110 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP VAL A 111 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP PRO A 112 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP ARG A 113 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP MET C 18 UNP Q81HW2 INITIATING METHIONINE SEQADV 8AYP CYS C 66 UNP Q81HW2 ASP 66 ENGINEERED MUTATION SEQADV 8AYP C UNP Q81HW2 GLY 67 DELETION SEQADV 8AYP ASP C 67 UNP Q81HW2 ASN 68 ENGINEERED MUTATION SEQADV 8AYP ILE C 68 UNP Q81HW2 PHE 69 ENGINEERED MUTATION SEQADV 8AYP LEU C 110 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP VAL C 111 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP PRO C 112 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP ARG C 113 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP MET D 18 UNP Q81HW2 INITIATING METHIONINE SEQADV 8AYP CYS D 66 UNP Q81HW2 ASP 66 ENGINEERED MUTATION SEQADV 8AYP D UNP Q81HW2 GLY 67 DELETION SEQADV 8AYP ASP D 67 UNP Q81HW2 ASN 68 ENGINEERED MUTATION SEQADV 8AYP ILE D 68 UNP Q81HW2 PHE 69 ENGINEERED MUTATION SEQADV 8AYP LEU D 110 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP VAL D 111 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP PRO D 112 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP ARG D 113 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP MET B 18 UNP Q81HW2 INITIATING METHIONINE SEQADV 8AYP CYS B 66 UNP Q81HW2 ASP 66 ENGINEERED MUTATION SEQADV 8AYP B UNP Q81HW2 GLY 67 DELETION SEQADV 8AYP ASP B 67 UNP Q81HW2 ASN 68 ENGINEERED MUTATION SEQADV 8AYP ILE B 68 UNP Q81HW2 PHE 69 ENGINEERED MUTATION SEQADV 8AYP LEU B 110 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP VAL B 111 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP PRO B 112 UNP Q81HW2 EXPRESSION TAG SEQADV 8AYP ARG B 113 UNP Q81HW2 EXPRESSION TAG SEQRES 1 A 96 MET TRP LYS ASP LYS GLU PHE GLN VAL LEU PHE VAL LEU SEQRES 2 A 96 THR ILE LEU THR LEU ILE SER GLY THR ILE PHE TYR SER SEQRES 3 A 96 THR VAL GLU GLY LEU ARG PRO ILE ASP ALA LEU TYR PHE SEQRES 4 A 96 SER VAL VAL THR LEU THR THR VAL GLY CYS ASP ILE SER SEQRES 5 A 96 PRO GLN THR ASP PHE GLY LYS ILE PHE THR ILE LEU TYR SEQRES 6 A 96 ILE PHE ILE GLY ILE GLY LEU VAL PHE GLY PHE ILE HIS SEQRES 7 A 96 LYS LEU ALA VAL ASN VAL GLN LEU PRO SER ILE LEU SER SEQRES 8 A 96 ASN LEU VAL PRO ARG SEQRES 1 C 96 MET TRP LYS ASP LYS GLU PHE GLN VAL LEU PHE VAL LEU SEQRES 2 C 96 THR ILE LEU THR LEU ILE SER GLY THR ILE PHE TYR SER SEQRES 3 C 96 THR VAL GLU GLY LEU ARG PRO ILE ASP ALA LEU TYR PHE SEQRES 4 C 96 SER VAL VAL THR LEU THR THR VAL GLY CYS ASP ILE SER SEQRES 5 C 96 PRO GLN THR ASP PHE GLY LYS ILE PHE THR ILE LEU TYR SEQRES 6 C 96 ILE PHE ILE GLY ILE GLY LEU VAL PHE GLY PHE ILE HIS SEQRES 7 C 96 LYS LEU ALA VAL ASN VAL GLN LEU PRO SER ILE LEU SER SEQRES 8 C 96 ASN LEU VAL PRO ARG SEQRES 1 D 96 MET TRP LYS ASP LYS GLU PHE GLN VAL LEU PHE VAL LEU SEQRES 2 D 96 THR ILE LEU THR LEU ILE SER GLY THR ILE PHE TYR SER SEQRES 3 D 96 THR VAL GLU GLY LEU ARG PRO ILE ASP ALA LEU TYR PHE SEQRES 4 D 96 SER VAL VAL THR LEU THR THR VAL GLY CYS ASP ILE SER SEQRES 5 D 96 PRO GLN THR ASP PHE GLY LYS ILE PHE THR ILE LEU TYR SEQRES 6 D 96 ILE PHE ILE GLY ILE GLY LEU VAL PHE GLY PHE ILE HIS SEQRES 7 D 96 LYS LEU ALA VAL ASN VAL GLN LEU PRO SER ILE LEU SER SEQRES 8 D 96 ASN LEU VAL PRO ARG SEQRES 1 B 96 MET TRP LYS ASP LYS GLU PHE GLN VAL LEU PHE VAL LEU SEQRES 2 B 96 THR ILE LEU THR LEU ILE SER GLY THR ILE PHE TYR SER SEQRES 3 B 96 THR VAL GLU GLY LEU ARG PRO ILE ASP ALA LEU TYR PHE SEQRES 4 B 96 SER VAL VAL THR LEU THR THR VAL GLY CYS ASP ILE SER SEQRES 5 B 96 PRO GLN THR ASP PHE GLY LYS ILE PHE THR ILE LEU TYR SEQRES 6 B 96 ILE PHE ILE GLY ILE GLY LEU VAL PHE GLY PHE ILE HIS SEQRES 7 B 96 LYS LEU ALA VAL ASN VAL GLN LEU PRO SER ILE LEU SER SEQRES 8 B 96 ASN LEU VAL PRO ARG HET MPD A 201 8 HET MPD A 202 8 HET RB A 203 1 HET RB A 204 1 HET BA A 205 1 HET BA A 206 1 HET MPD C 201 8 HET MPD C 202 8 HET MPD C 203 8 HET MPD C 204 8 HET MPD C 205 8 HET MPD C 206 8 HET MPD C 207 8 HET MPD C 208 8 HET MPD C 209 8 HET RB C 210 1 HET BA C 211 1 HET MPD D 201 8 HET MPD D 202 8 HET MPD D 203 8 HET MPD D 204 8 HET MPD D 205 8 HET MPD D 206 8 HET MPD D 207 8 HET MPD D 208 8 HET RB D 209 1 HET BA D 210 1 HET MPD B 201 8 HET MPD B 202 8 HET MPD B 203 8 HET MPD B 204 8 HET MPD B 205 8 HET MPD B 206 8 HET MPD B 207 8 HET MPD B 208 8 HET MPD B 209 8 HET MPD B 210 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM RB RUBIDIUM ION HETNAM BA BARIUM ION FORMUL 5 MPD 29(C6 H14 O2) FORMUL 7 RB 4(RB 1+) FORMUL 9 BA 4(BA 2+) FORMUL 42 HOH *72(H2 O) HELIX 1 AA1 ASP A 21 VAL A 45 1 25 HELIX 2 AA2 ARG A 49 THR A 62 1 14 HELIX 3 AA3 THR A 72 VAL A 101 1 30 HELIX 4 AA4 VAL A 101 SER A 108 1 8 HELIX 5 AA5 LYS C 22 VAL C 45 1 24 HELIX 6 AA6 ARG C 49 THR C 62 1 14 HELIX 7 AA7 THR C 72 VAL C 101 1 30 HELIX 8 AA8 VAL C 101 LEU C 110 1 10 HELIX 9 AA9 LYS D 22 VAL D 45 1 24 HELIX 10 AB1 ARG D 49 THR D 62 1 14 HELIX 11 AB2 THR D 72 VAL D 101 1 30 HELIX 12 AB3 VAL D 101 LEU D 110 1 10 HELIX 13 AB4 LYS B 22 VAL B 45 1 24 HELIX 14 AB5 ARG B 49 THR B 62 1 14 HELIX 15 AB6 THR B 72 VAL B 101 1 30 HELIX 16 AB7 LEU B 103 LEU B 107 5 5 LINK O THR A 63 RB RB A 203 1555 1555 3.20 LINK OG1 THR A 63 RB RB A 203 1555 1555 2.74 LINK O THR A 63 RB RB A 203 1555 3554 3.20 LINK OG1 THR A 63 RB RB A 203 1555 3554 2.74 LINK O THR A 63 RB RB A 204 1555 1555 2.81 LINK O THR A 63 RB RB A 204 1555 3554 2.81 LINK O VAL A 64 RB RB A 204 1555 1555 2.89 LINK O VAL A 64 RB RB A 204 1555 3554 2.88 LINK RB RB A 203 OG1 THR B 63 1555 1555 2.82 LINK RB RB A 203 OG1 THR B 63 3554 1555 2.82 LINK RB RB A 204 O THR B 63 1555 1555 2.79 LINK RB RB A 204 O THR B 63 3554 1555 2.79 LINK RB RB A 204 O VAL B 64 1555 1555 2.85 LINK RB RB A 204 O VAL B 64 3554 1555 2.85 LINK BA BA A 205 O HOH B 302 1555 1555 2.80 LINK BA BA A 205 O HOH B 302 1555 3554 2.79 LINK BA BA A 206 O HOH A 320 1555 1555 2.80 LINK BA BA A 206 O HOH A 320 1555 3554 2.79 LINK O THR C 63 RB RB C 210 1555 1555 3.08 LINK OG1 THR C 63 RB RB C 210 1555 1555 2.79 LINK O THR C 63 RB RB C 210 1555 3455 3.08 LINK OG1 THR C 63 RB RB C 210 1555 3455 2.79 LINK O THR C 63 RB RB D 209 1555 1555 3.11 LINK O THR C 63 RB RB D 209 1555 3455 2.64 LINK O VAL C 64 RB RB D 209 1555 3455 2.49 LINK RB RB C 210 O THR D 63 1555 1555 3.00 LINK RB RB C 210 OG1 THR D 63 1555 1555 2.82 LINK RB RB C 210 O THR D 63 3455 1555 3.00 LINK RB RB C 210 OG1 THR D 63 3455 1555 2.82 LINK O HOH C 302 BA BA D 210 1555 1555 2.75 LINK O HOH C 302 BA BA D 210 3455 1555 2.75 LINK O THR D 63 RB RB D 209 1555 1555 2.52 LINK O VAL D 64 RB RB D 209 1555 1555 2.79 LINK O VAL D 64 RB RB D 209 1555 3455 3.13 CRYST1 68.171 177.495 68.042 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014697 0.00000