HEADER CYTOSOLIC PROTEIN 13-SEP-22 8B25 TITLE DIHYDROPRECONDYLOCARPINE ACETATE SYNTHASE 2 FROM TABERNANTHE IBOGA - TITLE 2 STEMMADENINE ACETATE BOUND STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPRECONDYLOCARPINE ACETATE SYNTHASE 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TABERNANTHE IBOGA; SOURCE 3 ORGANISM_TAXID: 141617; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ALCOHOL DEHYDROGENASE, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.LANGLEY,J.BASQUIN,L.CAPUTI,S.E.O'CONNOR REVDAT 4 31-JAN-24 8B25 1 REMARK REVDAT 3 30-NOV-22 8B25 1 JRNL REVDAT 2 16-NOV-22 8B25 1 JRNL REVDAT 1 19-OCT-22 8B25 0 JRNL AUTH C.LANGLEY,E.TATSIS,B.HONG,Y.NAKAMURA,C.PAETZ, JRNL AUTH 2 C.E.M.STEVENSON,J.BASQUIN,D.M.LAWSON,L.CAPUTI,S.E.O'CONNOR JRNL TITL EXPANSION OF THE CATALYTIC REPERTOIRE OF ALCOHOL JRNL TITL 2 DEHYDROGENASES IN PLANT METABOLISM. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 10934 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 36198083 JRNL DOI 10.1002/ANIE.202210934 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC6_4061 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 35719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9200 - 6.4500 1.00 2814 143 0.1527 0.1684 REMARK 3 2 6.4500 - 5.1200 1.00 2837 149 0.1566 0.2170 REMARK 3 3 5.1200 - 4.4800 1.00 2817 151 0.1297 0.1639 REMARK 3 4 4.4800 - 4.0700 1.00 2816 146 0.1326 0.1616 REMARK 3 5 4.0700 - 3.7800 1.00 2813 147 0.1459 0.1801 REMARK 3 6 3.7800 - 3.5500 1.00 2853 152 0.1527 0.1632 REMARK 3 7 3.5500 - 3.3800 1.00 2805 147 0.1666 0.2616 REMARK 3 8 3.3700 - 3.2300 1.00 2837 151 0.1798 0.2395 REMARK 3 9 3.2300 - 3.1000 1.00 2828 149 0.1930 0.2765 REMARK 3 10 3.1000 - 3.0000 1.00 2826 151 0.1896 0.2181 REMARK 3 11 3.0000 - 2.9000 1.00 2820 153 0.1903 0.2623 REMARK 3 12 2.9000 - 2.8200 1.00 2794 148 0.2068 0.2290 REMARK 3 13 2.8200 - 2.7500 1.00 2836 153 0.2140 0.2952 REMARK 3 14 2.7500 - 2.6800 1.00 2817 151 0.2124 0.2829 REMARK 3 15 2.6800 - 2.6200 1.00 2801 147 0.2104 0.2790 REMARK 3 16 2.6200 - 2.5600 1.00 2864 150 0.2091 0.2832 REMARK 3 17 2.5600 - 2.5100 1.00 2773 147 0.2132 0.2916 REMARK 3 18 2.5100 - 2.4600 0.98 2769 148 0.2236 0.2660 REMARK 3 19 2.4600 - 2.4200 0.96 2724 145 0.2390 0.3156 REMARK 3 20 2.4200 - 2.3800 0.88 2524 132 0.2580 0.3421 REMARK 3 21 2.3800 - 2.3400 0.81 2257 117 0.2770 0.3033 REMARK 3 22 2.3400 - 2.3000 0.75 2113 113 0.2831 0.3149 REMARK 3 23 2.3000 - 2.2700 0.70 2003 101 0.3244 0.3750 REMARK 3 24 2.2700 - 2.2400 0.61 1742 94 0.3618 0.4395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.327 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.098 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5469 REMARK 3 ANGLE : 1.468 7453 REMARK 3 CHIRALITY : 0.075 876 REMARK 3 PLANARITY : 0.013 954 REMARK 3 DIHEDRAL : 7.047 770 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 5 through 63 or REMARK 3 (resid 64 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 65 REMARK 3 through 88 or (resid 89 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD or name CE )) or resid REMARK 3 90 through 155 or (resid 156 and (name N REMARK 3 or name CA or name C or name O )) or REMARK 3 (resid 157 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 158 REMARK 3 through 186 or (resid 187 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG1 or name CG2)) or resid 188 REMARK 3 through 205 or (resid 206 through 207 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 208 through 222 or REMARK 3 (resid 223 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 (resid 224 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD or name OE2)) or resid 225 through 227 REMARK 3 or (resid 228 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 229 through 237 or (resid 238 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 239 through 243 or (resid 244 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name CG )) or resid 245 REMARK 3 through 288 or (resid 289 and (name N or REMARK 3 name CA or name C or name O )) or resid REMARK 3 290 through 319 or (resid 320 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 or name CG )) or resid 321 through 362 or REMARK 3 (resid 901 and (name C1 or name C2 or REMARK 3 name O1 or name O2 )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 5 through 6 or REMARK 3 (resid 7 and (name N or name CA or name C REMARK 3 or name O or name CB )) or (resid 8 and REMARK 3 (name N or name CA or name C or name O )) REMARK 3 or (resid 9 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 10 through 12 or (resid 13 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 14 through 44 or REMARK 3 (resid 45 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD )) or resid 46 through 85 or (resid 86 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB or name CG )) or resid 87 REMARK 3 through 239 or (resid 240 through 241 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 242 through 287 or REMARK 3 (resid 288 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 289 through 347 or (resid 348 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD or name NE REMARK 3 or name CZ or name NH1)) or resid 349 REMARK 3 through 362 or (resid 701 and (name C1 or REMARK 3 name C2 or name O1 or name O2 )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35719 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 39.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5FI3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% W/V PEG 3350, 250 MM SODIUM REMARK 280 SULFATE AND 0.75 MM STEMMADENINE ACETATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.59300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.46100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.92250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.46100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.59300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.92250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 363 REMARK 465 GLU A 364 REMARK 465 PRO A 365 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 364 REMARK 465 PRO B 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 8 CB CG CD OE1 OE2 REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 LYS A 13 CD CE NZ REMARK 470 LYS A 31 CE NZ REMARK 470 LYS A 45 CE NZ REMARK 470 GLU A 64 CD OE1 OE2 REMARK 470 LYS A 86 CD CE NZ REMARK 470 LYS A 91 CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ARG A 238 CD NE CZ NH1 NH2 REMARK 470 ASP A 240 CG OD1 OD2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ARG A 244 NH1 NH2 REMARK 470 LYS A 284 CE NZ REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 LEU A 288 CD1 CD2 REMARK 470 PRO A 289 CG REMARK 470 LYS A 309 CD CE NZ REMARK 470 GLU A 320 OE1 OE2 REMARK 470 ARG A 348 NH2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 LYS B 13 CE NZ REMARK 470 LYS B 31 CE NZ REMARK 470 LYS B 45 NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 LYS B 89 NZ REMARK 470 LYS B 91 CE NZ REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 156 CB CG CD OE1 OE2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 ILE B 187 CD1 REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 ASP B 223 OD1 OD2 REMARK 470 GLU B 224 OE1 REMARK 470 ASN B 228 CG OD1 ND2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 241 CD CE NZ REMARK 470 ARG B 244 CD NE CZ NH1 NH2 REMARK 470 LYS B 284 CE NZ REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 LEU B 288 CD1 REMARK 470 PRO B 289 CB CG CD REMARK 470 LYS B 309 CD CE NZ REMARK 470 GLU B 320 CD OE1 OE2 REMARK 470 PRO B 363 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 661 O HOH A 680 2.05 REMARK 500 OE1 GLU A 328 O HOH A 601 2.10 REMARK 500 O2 EDO A 502 O HOH A 602 2.12 REMARK 500 OG SER B 303 O HOH B 601 2.16 REMARK 500 O HOH A 602 O HOH A 635 2.18 REMARK 500 O HOH A 633 O HOH A 675 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 351 CZ PHE A 351 CE2 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 300 CB - CG - CD1 ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO B 363 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 32 -155.88 -151.15 REMARK 500 GLU A 82 132.21 -170.49 REMARK 500 SER A 168 -55.80 -136.86 REMARK 500 LEU A 182 40.58 -92.26 REMARK 500 LEU A 194 69.94 -117.83 REMARK 500 ALA A 305 -144.25 44.02 REMARK 500 PHE B 32 -157.14 -150.03 REMARK 500 GLU B 82 135.01 -172.32 REMARK 500 SER B 168 -57.29 -133.96 REMARK 500 LEU B 182 38.34 -91.22 REMARK 500 LEU B 194 66.56 -117.69 REMARK 500 ALA B 305 -140.95 44.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 348 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 105 SG REMARK 620 2 CYS A 108 SG 114.2 REMARK 620 3 CYS A 111 SG 111.1 102.1 REMARK 620 4 CYS A 119 SG 108.6 120.5 98.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 105 SG REMARK 620 2 CYS B 108 SG 111.4 REMARK 620 3 CYS B 111 SG 111.7 100.8 REMARK 620 4 CYS B 119 SG 110.0 116.3 106.1 REMARK 620 N 1 2 3 DBREF1 8B25 A 1 365 UNP A0A5B8X8Z0_TABIB DBREF2 8B25 A A0A5B8X8Z0 1 365 DBREF1 8B25 B 1 365 UNP A0A5B8X8Z0_TABIB DBREF2 8B25 B A0A5B8X8Z0 1 365 SEQADV 8B25 HIS A 188 UNP A0A5B8X8Z GLN 188 CONFLICT SEQADV 8B25 HIS B 188 UNP A0A5B8X8Z GLN 188 CONFLICT SEQRES 1 A 365 MET ALA GLY LYS SER PRO GLU GLU GLU HIS PRO VAL LYS SEQRES 2 A 365 ALA TYR GLY TRP ALA VAL LYS ASP ARG THR THR GLY ILE SEQRES 3 A 365 LEU SER PRO PHE LYS PHE SER ARG ARG ALA THR GLY ASP SEQRES 4 A 365 ASN ASP ILE ARG ILE LYS ILE LEU TYR CYS GLY ILE CYS SEQRES 5 A 365 HIS THR ASP LEU THR SER VAL LYS ASN GLU TYR GLU PHE SEQRES 6 A 365 LEU SER TYR PRO LEU VAL PRO GLY MET GLU ILE VAL GLY SEQRES 7 A 365 ILE ALA THR GLU VAL GLY SER LYS VAL THR LYS ILE LYS SEQRES 8 A 365 VAL GLY GLU LYS VAL ALA VAL ALA ALA TYR LEU GLY THR SEQRES 9 A 365 CYS GLY LYS CYS TYR ASN CYS VAL ASN ASP LEU GLU ASN SEQRES 10 A 365 TYR CYS PRO GLU VAL ILE ILE GLY TYR GLY THR PRO TYR SEQRES 11 A 365 HIS ASP GLY THR ILE ASN TYR GLY GLY LEU SER ASN GLU SEQRES 12 A 365 THR VAL VAL ASN GLU ARG PHE VAL LEU ARG PHE PRO GLU SEQRES 13 A 365 LYS LEU SER PRO ALA GLY GLY ALA PRO LEU LEU SER ALA SEQRES 14 A 365 GLY ILE THR ALA TYR SER ALA MET ARG ASN HIS GLY LEU SEQRES 15 A 365 ASP LYS PRO GLY ILE HIS LEU GLY VAL VAL GLY LEU GLY SEQRES 16 A 365 GLY LEU GLY HIS LEU ALA VAL LYS PHE ALA LYS ALA PHE SEQRES 17 A 365 GLY VAL ARG VAL THR VAL ILE SER THR THR PRO SER LYS SEQRES 18 A 365 LYS ASP GLU ALA ILE ASN ASN LEU GLY ALA ASP ALA PHE SEQRES 19 A 365 LEU PHE SER ARG ASP ASP LYS GLN MET ARG ALA ALA ILE SEQRES 20 A 365 GLY THR PHE ASP ALA ILE ILE ASP THR LEU ALA VAL VAL SEQRES 21 A 365 HIS PRO ILE ALA PRO LEU LEU ASP LEU LEU ARG SER HIS SEQRES 22 A 365 GLY LYS LEU VAL LEU VAL GLY ALA PRO SER LYS PRO LEU SEQRES 23 A 365 GLU LEU PRO THR ILE PRO LEU LEU SER GLY GLY LYS SER SEQRES 24 A 365 LEU ILE GLY SER ALA ALA GLY ASN VAL LYS GLN THR GLN SEQRES 25 A 365 GLU MET LEU ASP PHE ALA ALA GLU HIS ASP ILE THR ALA SEQRES 26 A 365 ASN ILE GLU VAL ILE PRO ILE ASP TYR ILE ASN THR ALA SEQRES 27 A 365 MET GLU ARG LEU ASP LYS GLY ASP ILE ARG PHE ARG PHE SEQRES 28 A 365 VAL VAL ASP ILE GLU ASN THR LEU THR PRO PRO PRO GLU SEQRES 29 A 365 PRO SEQRES 1 B 365 MET ALA GLY LYS SER PRO GLU GLU GLU HIS PRO VAL LYS SEQRES 2 B 365 ALA TYR GLY TRP ALA VAL LYS ASP ARG THR THR GLY ILE SEQRES 3 B 365 LEU SER PRO PHE LYS PHE SER ARG ARG ALA THR GLY ASP SEQRES 4 B 365 ASN ASP ILE ARG ILE LYS ILE LEU TYR CYS GLY ILE CYS SEQRES 5 B 365 HIS THR ASP LEU THR SER VAL LYS ASN GLU TYR GLU PHE SEQRES 6 B 365 LEU SER TYR PRO LEU VAL PRO GLY MET GLU ILE VAL GLY SEQRES 7 B 365 ILE ALA THR GLU VAL GLY SER LYS VAL THR LYS ILE LYS SEQRES 8 B 365 VAL GLY GLU LYS VAL ALA VAL ALA ALA TYR LEU GLY THR SEQRES 9 B 365 CYS GLY LYS CYS TYR ASN CYS VAL ASN ASP LEU GLU ASN SEQRES 10 B 365 TYR CYS PRO GLU VAL ILE ILE GLY TYR GLY THR PRO TYR SEQRES 11 B 365 HIS ASP GLY THR ILE ASN TYR GLY GLY LEU SER ASN GLU SEQRES 12 B 365 THR VAL VAL ASN GLU ARG PHE VAL LEU ARG PHE PRO GLU SEQRES 13 B 365 LYS LEU SER PRO ALA GLY GLY ALA PRO LEU LEU SER ALA SEQRES 14 B 365 GLY ILE THR ALA TYR SER ALA MET ARG ASN HIS GLY LEU SEQRES 15 B 365 ASP LYS PRO GLY ILE HIS LEU GLY VAL VAL GLY LEU GLY SEQRES 16 B 365 GLY LEU GLY HIS LEU ALA VAL LYS PHE ALA LYS ALA PHE SEQRES 17 B 365 GLY VAL ARG VAL THR VAL ILE SER THR THR PRO SER LYS SEQRES 18 B 365 LYS ASP GLU ALA ILE ASN ASN LEU GLY ALA ASP ALA PHE SEQRES 19 B 365 LEU PHE SER ARG ASP ASP LYS GLN MET ARG ALA ALA ILE SEQRES 20 B 365 GLY THR PHE ASP ALA ILE ILE ASP THR LEU ALA VAL VAL SEQRES 21 B 365 HIS PRO ILE ALA PRO LEU LEU ASP LEU LEU ARG SER HIS SEQRES 22 B 365 GLY LYS LEU VAL LEU VAL GLY ALA PRO SER LYS PRO LEU SEQRES 23 B 365 GLU LEU PRO THR ILE PRO LEU LEU SER GLY GLY LYS SER SEQRES 24 B 365 LEU ILE GLY SER ALA ALA GLY ASN VAL LYS GLN THR GLN SEQRES 25 B 365 GLU MET LEU ASP PHE ALA ALA GLU HIS ASP ILE THR ALA SEQRES 26 B 365 ASN ILE GLU VAL ILE PRO ILE ASP TYR ILE ASN THR ALA SEQRES 27 B 365 MET GLU ARG LEU ASP LYS GLY ASP ILE ARG PHE ARG PHE SEQRES 28 B 365 VAL VAL ASP ILE GLU ASN THR LEU THR PRO PRO PRO GLU SEQRES 29 B 365 PRO HET OSO A 501 29 HET EDO A 502 4 HET EDO A 503 10 HET EDO A 504 10 HET EDO A 505 10 HET SO4 A 506 5 HET ZN A 507 1 HET OSO B 501 29 HET EDO B 502 10 HET SO4 B 503 5 HET ZN B 504 1 HETNAM OSO STEMMADENINE ACETATE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETSYN OSO METHYL (1~{S},2~{S},14~{S})-2-(ACETYLOXYMETHYL)-16- HETSYN 2 OSO ETHYLIDENE-4-AZA-14-AZONIATETRACYCLO[12.2.2.0^{3, HETSYN 3 OSO 11}.0^{5,10}]OCTADECA-3(11),5,7,9-TETRAENE-2- HETSYN 4 OSO CARBOXYLATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 OSO 2(C23 H29 N2 O4 1+) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 8 SO4 2(O4 S 2-) FORMUL 9 ZN 2(ZN 2+) FORMUL 14 HOH *168(H2 O) HELIX 1 AA1 CYS A 52 LYS A 60 1 9 HELIX 2 AA2 CYS A 108 ASN A 113 1 6 HELIX 3 AA3 LEU A 115 CYS A 119 5 5 HELIX 4 AA4 SER A 159 ALA A 164 1 6 HELIX 5 AA5 PRO A 165 LEU A 167 5 3 HELIX 6 AA6 SER A 168 HIS A 180 1 13 HELIX 7 AA7 GLY A 195 GLY A 209 1 15 HELIX 8 AA8 THR A 218 SER A 220 5 3 HELIX 9 AA9 LYS A 221 ASN A 227 1 7 HELIX 10 AB1 ASP A 239 ALA A 246 1 8 HELIX 11 AB2 ILE A 263 LEU A 269 1 7 HELIX 12 AB3 PRO A 289 GLY A 296 1 8 HELIX 13 AB4 ASN A 307 HIS A 321 1 15 HELIX 14 AB5 PRO A 331 ASP A 333 5 3 HELIX 15 AB6 TYR A 334 GLY A 345 1 12 HELIX 16 AB7 ILE A 355 LEU A 359 1 5 HELIX 17 AB8 CYS B 52 LYS B 60 1 9 HELIX 18 AB9 CYS B 108 ASN B 113 1 6 HELIX 19 AC1 LEU B 115 CYS B 119 5 5 HELIX 20 AC2 GLY B 163 LEU B 167 5 5 HELIX 21 AC3 SER B 168 HIS B 180 1 13 HELIX 22 AC4 GLY B 195 GLY B 209 1 15 HELIX 23 AC5 THR B 218 SER B 220 5 3 HELIX 24 AC6 LYS B 221 ASN B 228 1 8 HELIX 25 AC7 ASP B 239 ALA B 246 1 8 HELIX 26 AC8 ILE B 263 LEU B 269 1 7 HELIX 27 AC9 PRO B 289 GLY B 297 1 9 HELIX 28 AD1 ASN B 307 HIS B 321 1 15 HELIX 29 AD2 PRO B 331 ASP B 333 5 3 HELIX 30 AD3 TYR B 334 LYS B 344 1 11 HELIX 31 AD4 ILE B 355 LEU B 359 1 5 SHEET 1 AA1 2 VAL A 12 VAL A 19 0 SHEET 2 AA1 2 LEU A 27 ARG A 34 -1 O PHE A 32 N ALA A 14 SHEET 1 AA2 5 GLU A 143 ASN A 147 0 SHEET 2 AA2 5 ASP A 41 ILE A 51 -1 N ILE A 44 O THR A 144 SHEET 3 AA2 5 GLU A 75 VAL A 83 -1 O ILE A 79 N LYS A 45 SHEET 4 AA2 5 LYS A 95 VAL A 98 -1 O VAL A 96 N GLY A 78 SHEET 5 AA2 5 VAL A 151 ARG A 153 -1 O LEU A 152 N ALA A 97 SHEET 1 AA3 4 GLU A 143 ASN A 147 0 SHEET 2 AA3 4 ASP A 41 ILE A 51 -1 N ILE A 44 O THR A 144 SHEET 3 AA3 4 ARG A 350 ASP A 354 -1 O VAL A 353 N CYS A 49 SHEET 4 AA3 4 ILE A 327 ILE A 330 1 N GLU A 328 O ARG A 350 SHEET 1 AA4 2 TYR A 101 GLY A 103 0 SHEET 2 AA4 2 ILE A 123 ILE A 124 -1 O ILE A 123 N GLY A 103 SHEET 1 AA512 ALA A 233 PHE A 236 0 SHEET 2 AA512 ARG A 211 SER A 216 1 N VAL A 214 O LEU A 235 SHEET 3 AA512 HIS A 188 VAL A 192 1 N VAL A 191 O ILE A 215 SHEET 4 AA512 PHE A 250 ASP A 255 1 O ILE A 254 N GLY A 190 SHEET 5 AA512 LEU A 270 LEU A 278 1 O ARG A 271 N PHE A 250 SHEET 6 AA512 SER A 299 GLY A 302 1 O ILE A 301 N LEU A 278 SHEET 7 AA512 SER B 299 GLY B 302 -1 O LEU B 300 N LEU A 300 SHEET 8 AA512 LEU B 270 LEU B 278 1 N LEU B 278 O ILE B 301 SHEET 9 AA512 PHE B 250 ASP B 255 1 N PHE B 250 O ARG B 271 SHEET 10 AA512 HIS B 188 VAL B 192 1 N GLY B 190 O ILE B 254 SHEET 11 AA512 ARG B 211 SER B 216 1 O ARG B 211 N LEU B 189 SHEET 12 AA512 ALA B 233 PHE B 236 1 O LEU B 235 N VAL B 214 SHEET 1 AA6 2 LEU A 286 LEU A 288 0 SHEET 2 AA6 2 LEU B 286 LEU B 288 -1 O LEU B 286 N LEU A 288 SHEET 1 AA7 2 VAL B 12 VAL B 19 0 SHEET 2 AA7 2 LEU B 27 ARG B 34 -1 O PHE B 32 N ALA B 14 SHEET 1 AA8 5 GLU B 143 ASN B 147 0 SHEET 2 AA8 5 ASP B 41 ILE B 51 -1 N ILE B 44 O THR B 144 SHEET 3 AA8 5 GLU B 75 VAL B 83 -1 O ILE B 79 N LYS B 45 SHEET 4 AA8 5 LYS B 95 VAL B 98 -1 O VAL B 96 N GLY B 78 SHEET 5 AA8 5 VAL B 151 ARG B 153 -1 O LEU B 152 N ALA B 97 SHEET 1 AA9 4 GLU B 143 ASN B 147 0 SHEET 2 AA9 4 ASP B 41 ILE B 51 -1 N ILE B 44 O THR B 144 SHEET 3 AA9 4 ARG B 350 ASP B 354 -1 O VAL B 353 N CYS B 49 SHEET 4 AA9 4 ILE B 327 ILE B 330 1 N ILE B 330 O VAL B 352 SHEET 1 AB1 2 TYR B 101 GLY B 103 0 SHEET 2 AB1 2 ILE B 123 ILE B 124 -1 O ILE B 123 N GLY B 103 LINK SG CYS A 105 ZN ZN A 507 1555 1555 2.41 LINK SG CYS A 108 ZN ZN A 507 1555 1555 2.33 LINK SG CYS A 111 ZN ZN A 507 1555 1555 2.35 LINK SG CYS A 119 ZN ZN A 507 1555 1555 2.35 LINK SG CYS B 105 ZN ZN B 504 1555 1555 2.36 LINK SG CYS B 108 ZN ZN B 504 1555 1555 2.35 LINK SG CYS B 111 ZN ZN B 504 1555 1555 2.29 LINK SG CYS B 119 ZN ZN B 504 1555 1555 2.42 CISPEP 1 TYR A 68 PRO A 69 0 6.60 CISPEP 2 ARG A 348 PHE A 349 0 8.54 CISPEP 3 TYR B 68 PRO B 69 0 5.70 CISPEP 4 ARG B 348 PHE B 349 0 8.20 CRYST1 73.186 79.845 130.922 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007638 0.00000 MTRIX1 1 -0.999978 -0.001089 -0.006608 110.04862 1 MTRIX2 1 -0.001594 0.997046 0.076789 -7.33478 1 MTRIX3 1 0.006505 0.076798 -0.997025 188.66259 1