HEADER IMMUNE SYSTEM 13-SEP-22 8B28 TITLE STRUCTURE OF AN INTRON-RETENTION VARIANT OF THE PLANT IMMUNE TITLE 2 SIGNALLING PROTEIN EDS1 FROM VITIS VINIFERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENHANCED DISEASE SUSCEPTIBILITY 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITIS VINIFERA; SOURCE 3 ORGANISM_COMMON: WINE GRAPE; SOURCE 4 ORGANISM_TAXID: 29760; SOURCE 5 GENE: EDS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENHANCED DISEASE SUSCEPTIBILITY 1 PLANT INNATE IMMUNE SYSTEM INTRON KEYWDS 2 RETENTION DURING ALTERNATIVE SPLICING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.VOSS,K.NIEFIND REVDAT 3 07-FEB-24 8B28 1 REMARK REVDAT 2 12-APR-23 8B28 1 JRNL REVDAT 1 05-APR-23 8B28 0 JRNL AUTH M.VOSS,L.J.CSEKE,W.GASSMANN,K.NIEFIND JRNL TITL A SPLICING VARIANT OF EDS1 FROM VITIS VINIFERA FORMS JRNL TITL 2 HOMODIMERS BUT NO HETERODIMERS WITH PAD4. JRNL REF PROTEIN SCI. V. 32 E4624 2023 JRNL REFN ESSN 1469-896X JRNL PMID 36917448 JRNL DOI 10.1002/PRO.4624 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.VOSS,C.TOELZER,D.D.BHANDARI,J.E.PARKER,K.NIEFIND REMARK 1 TITL ARABIDOPSIS IMMUNITY REGULATOR EDS1 IN A PAD4/SAG101-UNBOUND REMARK 1 TITL 2 FORM IS A MONOMER WITH AN INHERENTLY INACTIVE CONFORMATION. REMARK 1 REF J STRUCT BIOL V. 208 07390 2019 REMARK 1 REFN ESSN 1095-8657 REMARK 1 PMID 31550533 REMARK 1 DOI 10.1016/J.JSB.2019.09.007 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.3 REMARK 3 NUMBER OF REFLECTIONS : 29020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8100 - 3.3600 0.94 5359 194 0.1470 0.1805 REMARK 3 2 3.3600 - 2.6600 0.96 5418 192 0.1647 0.1824 REMARK 3 3 2.6600 - 2.3300 0.97 5398 193 0.1837 0.2147 REMARK 3 4 2.3300 - 2.1100 0.98 5511 200 0.2062 0.2598 REMARK 3 5 2.1100 - 1.9600 0.81 4508 164 0.2385 0.2633 REMARK 3 6 1.9600 - 1.8500 0.27 1477 55 0.2713 0.2833 REMARK 3 7 1.8500 - 1.7500 0.06 339 12 0.3290 0.2187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.182 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2758 REMARK 3 ANGLE : 0.567 3728 REMARK 3 CHIRALITY : 0.043 398 REMARK 3 PLANARITY : 0.005 492 REMARK 3 DIHEDRAL : 12.982 1012 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0788 13.3056 26.4293 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.2393 REMARK 3 T33: 0.1069 T12: -0.0226 REMARK 3 T13: -0.0031 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 4.7433 L22: 3.8063 REMARK 3 L33: 4.6270 L12: 0.2619 REMARK 3 L13: 0.2523 L23: -0.0991 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: 0.7726 S13: -0.6473 REMARK 3 S21: -0.6356 S22: -0.3181 S23: 0.4091 REMARK 3 S31: 0.4741 S32: -0.4622 S33: -0.0512 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1915 20.8094 45.2895 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0854 REMARK 3 T33: 0.0971 T12: 0.0290 REMARK 3 T13: 0.0342 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.5377 L22: 1.8588 REMARK 3 L33: 1.9079 L12: 0.1015 REMARK 3 L13: 0.8146 L23: -0.2427 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: -0.1195 S13: 0.2189 REMARK 3 S21: 0.0478 S22: -0.0082 S23: 0.0770 REMARK 3 S31: -0.1229 S32: -0.0849 S33: 0.0646 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9158 12.4839 54.6053 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.1806 REMARK 3 T33: 0.1084 T12: -0.0013 REMARK 3 T13: 0.0011 T23: 0.0726 REMARK 3 L TENSOR REMARK 3 L11: 1.4455 L22: 2.9144 REMARK 3 L33: 2.6163 L12: 0.4445 REMARK 3 L13: -0.3196 L23: 0.1935 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: -0.6742 S13: -0.2071 REMARK 3 S21: 0.5020 S22: -0.0308 S23: -0.0448 REMARK 3 S31: 0.1606 S32: -0.2031 S33: -0.0360 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0298 14.4805 42.0066 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0619 REMARK 3 T33: 0.0579 T12: 0.0105 REMARK 3 T13: 0.0055 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.4370 L22: 2.0942 REMARK 3 L33: 1.7957 L12: -0.0237 REMARK 3 L13: -0.2218 L23: -0.5785 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: -0.0515 S13: -0.0426 REMARK 3 S21: -0.1135 S22: 0.0541 S23: 0.0017 REMARK 3 S31: 0.0741 S32: -0.1059 S33: 0.0221 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5549 20.7995 43.4805 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.1698 REMARK 3 T33: 0.2034 T12: -0.0275 REMARK 3 T13: -0.0038 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.0521 L22: 1.3314 REMARK 3 L33: 2.1994 L12: -0.7547 REMARK 3 L13: 0.1177 L23: -0.3162 REMARK 3 S TENSOR REMARK 3 S11: -0.0671 S12: -0.1810 S13: 0.3534 REMARK 3 S21: 0.1334 S22: -0.0156 S23: -0.2100 REMARK 3 S31: -0.2686 S32: 0.1406 S33: 0.1048 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5058 31.8941 32.8685 REMARK 3 T TENSOR REMARK 3 T11: 0.3174 T22: 0.2905 REMARK 3 T33: 0.6313 T12: -0.1355 REMARK 3 T13: 0.1333 T23: 0.1234 REMARK 3 L TENSOR REMARK 3 L11: 1.6983 L22: 0.0650 REMARK 3 L33: 2.2849 L12: 0.1875 REMARK 3 L13: 0.0518 L23: 0.3018 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.2361 S13: 0.8689 REMARK 3 S21: -0.1127 S22: -0.1237 S23: -0.9477 REMARK 3 S31: -0.8211 S32: 0.4913 S33: -0.2641 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0078 16.2338 24.5158 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.2608 REMARK 3 T33: 0.1378 T12: 0.0066 REMARK 3 T13: 0.0501 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 4.3529 L22: 1.0777 REMARK 3 L33: 5.6344 L12: 0.5091 REMARK 3 L13: -1.8506 L23: 1.9897 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.5332 S13: 0.0300 REMARK 3 S21: -0.3348 S22: 0.0070 S23: -0.1063 REMARK 3 S31: 0.1884 S32: 0.0091 S33: -0.0604 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8B28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1292125582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.915079 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 (BUILT REMARK 200 20220820) REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.3 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : 0.66800 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: 6I8G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 4.5 MG/ML IN 300 MM REMARK 280 SODIUM IODIDE, 1 % GLYCEROL, 1 MM DTT, 50 MM HEPES BUFFER, PH REMARK 280 8.0). RESERVOIR SOLUTION: 12 % PEG3350, 300 MILLIMOLAR CSCL, 100 REMARK 280 MILLIMOLAR BIS-TRIS PUFFER, PH 8.5. CRYSTALLIZATION DROP BEFORE REMARK 280 EQUILIBRATION: 1.5 MIKROLITER PROTEIN SOLUTION PLUS AND 1.5 REMARK 280 MIKROLITER RESERVOIR SOLUTION., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.27450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.53850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.27450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.53850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 120.28547 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.61019 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 643 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 LYS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 PRO A -17 REMARK 465 MET A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 LEU A 332 REMARK 465 GLU A 333 REMARK 465 ASP A 334 REMARK 465 LEU A 335 REMARK 465 PRO A 336 REMARK 465 LEU A 337 REMARK 465 SER A 338 REMARK 465 SER A 339 REMARK 465 ASN A 340 REMARK 465 GLY A 341 REMARK 465 GLY A 342 REMARK 465 PRO A 343 REMARK 465 ALA A 344 REMARK 465 THR A 345 REMARK 465 VAL A 346 REMARK 465 ASN A 347 REMARK 465 ILE A 348 REMARK 465 ALA A 349 REMARK 465 LEU A 350 REMARK 465 ASN A 351 REMARK 465 ASP A 352 REMARK 465 LEU A 353 REMARK 465 GLY A 354 REMARK 465 LEU A 355 REMARK 465 VAL A 356 REMARK 465 SER A 357 REMARK 465 PHE A 358 REMARK 465 LEU A 359 REMARK 465 SER A 360 REMARK 465 CYS A 361 REMARK 465 SER A 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 77.71 -110.48 REMARK 500 SER A 123 -138.00 57.84 REMARK 500 GLN A 296 -131.28 50.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 766 DISTANCE = 6.95 ANGSTROMS DBREF 8B28 A 1 355 UNP G3F1Q6 G3F1Q6_VITVI 1 355 SEQADV 8B28 MET A -25 UNP G3F1Q6 INITIATING METHIONINE SEQADV 8B28 LYS A -24 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 HIS A -23 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 HIS A -22 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 HIS A -21 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 HIS A -20 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 HIS A -19 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 HIS A -18 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 PRO A -17 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 MET A -16 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 SER A -15 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 ASP A -14 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 TYR A -13 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 ASP A -12 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 ILE A -11 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 PRO A -10 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 THR A -9 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 THR A -8 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 GLU A -7 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 ASN A -6 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 LEU A -5 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 TYR A -4 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 PHE A -3 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 GLN A -2 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 GLY A -1 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 ALA A 0 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 VAL A 356 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 SER A 357 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 PHE A 358 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 LEU A 359 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 SER A 360 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 CYS A 361 UNP G3F1Q6 EXPRESSION TAG SEQADV 8B28 SER A 362 UNP G3F1Q6 EXPRESSION TAG SEQRES 1 A 388 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 388 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA SEQRES 3 A 388 MET GLY GLU THR LEU GLY ASN ARG ILE ARG LEU SER GLU SEQRES 4 A 388 GLU ILE VAL ASN ARG ALA ALA SER GLN ALA MET ARG ALA SEQRES 5 A 388 HIS ASN SER ALA GLY ARG PRO PHE LEU LEU ASP LYS THR SEQRES 6 A 388 ARG GLY PHE ALA ILE PHE ALA PHE ALA GLY SER TRP LEU SEQRES 7 A 388 SER ASP ASP TRP PHE THR HIS PRO PRO PHE GLY GLU THR SEQRES 8 A 388 LYS MET ASP ALA SER THR PHE PRO SER LEU ARG SER VAL SEQRES 9 A 388 GLY ASN ASP GLU VAL ALA VAL VAL ASN ALA SER PHE LEU SEQRES 10 A 388 ARG ARG PHE LYS ALA ILE LEU ASP GLN LEU PRO LEU GLU SEQRES 11 A 388 ARG GLU VAL GLN LYS VAL ILE ALA ASP ARG ARG GLN VAL SEQRES 12 A 388 VAL PHE THR GLY HIS SER TRP GLY GLY ALA MET ALA ILE SEQRES 13 A 388 LEU ALA THR LEU TYR PHE LEU GLU LYS ALA GLY PRO ASN SEQRES 14 A 388 GLN ASN PRO PRO ARG CYS ILE THR PHE GLY SER PRO LEU SEQRES 15 A 388 VAL GLY ASP ARG ILE PHE GLY HIS ALA VAL ARG ARG GLU SEQRES 16 A 388 LYS TRP SER ASP HIS PHE ILE HIS PHE VAL MET ARG PHE SEQRES 17 A 388 ASP VAL ILE PRO ARG ILE MET LEU GLY PRO ALA SER THR SEQRES 18 A 388 GLU HIS GLN GLN ILE LEU ASN PHE PHE ASN PRO ARG SER SEQRES 19 A 388 GLN PHE TYR ARG GLU PRO LEU ASP PRO PRO LEU GLY PHE SEQRES 20 A 388 TYR LEU ASN VAL MET ARG SER ALA SER SER VAL ALA ILE SEQRES 21 A 388 HIS ASP ALA CYS ILE LEU MET GLY CYS THR ASN PRO LEU SEQRES 22 A 388 LEU GLU THR LEU ARG ASN PHE THR GLU LEU SER PRO TYR SEQRES 23 A 388 ARG PRO PHE GLY THR TYR ILE PHE CYS THR GLY ASN GLY SEQRES 24 A 388 LYS LEU VAL VAL LEU LYS ASN PRO ASP ALA VAL LEU GLN SEQRES 25 A 388 ILE LEU PHE TYR CYS ALA GLN LEU SER GLN GLU GLU ALA SEQRES 26 A 388 ALA GLU ILE ALA GLN ARG SER LEU HIS GLU HIS LEU ALA SEQRES 27 A 388 TYR GLU ASN GLU LEU GLN GLU SER LEU GLY MET GLN ASN SEQRES 28 A 388 VAL VAL TYR LEU ASP SER LEU GLU ASP LEU PRO LEU SER SEQRES 29 A 388 SER ASN GLY GLY PRO ALA THR VAL ASN ILE ALA LEU ASN SEQRES 30 A 388 ASP LEU GLY LEU VAL SER PHE LEU SER CYS SER HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 8(C2 H6 O2) FORMUL 10 HOH *266(H2 O) HELIX 1 AA1 THR A 4 ARG A 10 1 7 HELIX 2 AA2 SER A 12 HIS A 27 1 16 HELIX 3 AA3 LEU A 52 TRP A 56 5 5 HELIX 4 AA4 PHE A 72 ARG A 76 5 5 HELIX 5 AA5 ALA A 88 LEU A 101 1 14 HELIX 6 AA6 PRO A 102 ASP A 113 1 12 HELIX 7 AA7 SER A 123 ALA A 140 1 18 HELIX 8 AA8 ASP A 159 GLU A 169 1 11 HELIX 9 AA9 TRP A 171 ASP A 173 5 3 HELIX 10 AB1 VAL A 184 MET A 189 1 6 HELIX 11 AB2 GLU A 196 ASN A 205 1 10 HELIX 12 AB3 PRO A 206 TYR A 211 5 6 HELIX 13 AB4 GLY A 220 MET A 241 1 22 HELIX 14 AB5 THR A 244 ARG A 252 1 9 HELIX 15 AB6 ASN A 280 CYS A 291 1 12 HELIX 16 AB7 GLU A 301 LEU A 311 1 11 HELIX 17 AB8 ALA A 312 MET A 323 1 12 SHEET 1 AA1 8 PHE A 34 THR A 39 0 SHEET 2 AA1 8 PHE A 42 PHE A 47 -1 O ILE A 44 N ASP A 37 SHEET 3 AA1 8 GLN A 116 HIS A 122 1 O VAL A 118 N PHE A 45 SHEET 4 AA1 8 ARG A 148 PHE A 152 1 O ARG A 148 N PHE A 119 SHEET 5 AA1 8 PHE A 175 MET A 180 1 O PHE A 178 N THR A 151 SHEET 6 AA1 8 THR A 265 GLY A 271 1 O THR A 265 N HIS A 177 SHEET 7 AA1 8 LYS A 274 LEU A 278 -1 O VAL A 276 N PHE A 268 SHEET 8 AA1 8 ASN A 325 TYR A 328 1 O VAL A 327 N VAL A 277 SHEET 1 AA2 2 GLU A 64 LYS A 66 0 SHEET 2 AA2 2 VAL A 85 ASN A 87 -1 O VAL A 86 N THR A 65 CISPEP 1 PRO A 60 PRO A 61 0 -0.01 CRYST1 144.549 65.077 45.454 90.00 105.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006918 0.000000 0.001916 0.00000 SCALE2 0.000000 0.015366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022828 0.00000